Rorug02G0567900

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007923
Physical Location & Seq
Forward (+)
69313591 .. 69315292
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0567900.1

Sequence Viewer

Length: 1140 bp
ATGACACCTCATAGTAAGTCATTTCCTGTGCTTGCCCTCGTTGCTGGTGTAGGTTCCAGCATACTTGTGTTCTCTGTCCTCGGATACTTGGTTTTCAGAAAAAGATGGAAAGTCAAGGACTCTGGCTCCAGCAAGAGGAGAATGAAGTTTACAACAACCCCCGGGTCCTCTTATCCGTGTCACTACTTTTCATTGGCAGAGATCAAAGCCGCCACCAAAAACTTCAATGATGCTTTTATCATTGGCGCTGGAGGATTTGGTAATGTATACAAAGGATGCATTGATGGTGGAGCCACTCCAGTTGCAATCAAATGGCTGAAACCAGAATCATCCCAAGGTGTCCATGAGTTGGAGACTGAAATTGAGATGCTCTCCCAACTCCGTCATCGCCATTTGGTTTCACTCATTGGATATTGTACTGATAAAGGAGAGATGATCTTAGTGTATGATTACATGGCACAAGGAACCCTCCCTCGAGGGTTGCAGTATCTTCATAGTGGTGCAAAGGGCACCATCATTCACCGAGATGTGAAGAGCACAAACATCTTATTGGATGACAAATGGGTGGCCAAGGTTTCAGATTTCGGGCTGTCCAAAGGCACAACAAACATGTCCAAAACCCACATCAGCACGATTGTGAAAGGGAGTTTCGGGTATCTGGATCCAGAATACTACCGACGACAACGTGTGACTGAGAAGTCAGACGTCTACTCATTTAGTGTAGTTCTGTGTGAGGTATTGTGTGCAAGGCCAGCAGTAATACATACAGAGAAAACAGAATTACACCAAGTGAATCTGGCAGAGTGGACCAAGAGCTGTCATCAGAATGGAGAACTTGATCAAATCATTGATGCAAGTTTAAGAGGTAAGATTGTAGCCGAGTGCTTGAATATATTCGCTGAGGTAGCAATCAGTTGCATGCATGACAATGGGACCAAACGGCCGTCCATGAATGATGTTGTAAGAGGGCTTGAGCTTGCATTGGACCTTCAACGAAGCACAGAGGGGAACATCAACTGCACTGAAAAGATCGGTGAAACTGAAACAAGCAGTAGTGAGCAAAGTTGTGCAACCAACAATTCCATTGTATGCATATCTGGGACAATCTTCTCTGAGGTCAACAATCCGAGTGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

379

Amino Acids

41.72

Weight (kDa)

8.21

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 80 - 157 4.1e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 81 - 161 1.1e-15 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 159 - 323 6.3e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 159 - 321 1.1e-23 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 697
AatII GACGTC 1 cut(s) 708
AbsI CCTCGAGG 1 cut(s) 474
AccB1I GGYRCC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 2 cut(s) 267, 708
AciI CCGC 1 cut(s) 210
AclWI GGATC 2 cut(s) 656, 669
AcoI YGGCCR 2 cut(s) 567, 941
AcyI GRCGYC 1 cut(s) 705
AdeI CACNNNGTG 1 cut(s) 790
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 135, 349
AflIII ACRYGT 2 cut(s) 609, 685
AgsI TTSAA 3 cut(s) 226, 889, 992
AleI CACNNNNGTG 1 cut(s) 635
AluBI AGCT 2 cut(s) 816, 976
AluI AGCT 2 cut(s) 816, 976
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 2 cut(s) 656, 669
Ama87I CYCGRG 2 cut(s) 161, 474
AoxI GGCC 3 cut(s) 567, 749, 941
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 4 cut(s) 165, 807, 933, 985
AsuC2I CCSGG 2 cut(s) 162, 163
AsuHPI GGTGA 2 cut(s) 512, 1046
AvaI CYCGRG 2 cut(s) 161, 474
AvaII GGWCC 4 cut(s) 165, 807, 933, 985
BaeGI GKGCMC 1 cut(s) 512
BalI TGGCCA 1 cut(s) 569
BamHI GGATCC 1 cut(s) 661
BanI GGYRCC 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 539
BbvCI CCTCAGC 1 cut(s) 900
BccI CCATC 3 cut(s) 99, 278, 521
BceAI ACGGC 2 cut(s) 928, 956
BciVI GTATCC 1 cut(s) 77
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 2 cut(s) 162, 163
BcoDI GTCTC 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 249
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 162, 163
Bme18I GGWCC 4 cut(s) 165, 807, 933, 985
BmeT110I CYCGRG 2 cut(s) 161, 474
BmgT120I GGNCC 4 cut(s) 165, 807, 933, 985
BmiI GGNNCC 8 cut(s) 55, 127, 166, 292, 466, 511, 663, 934
BmrFI CCNGG 2 cut(s) 162, 163
BmsI GCATC 4 cut(s) 220, 266, 357, 841
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 3 cut(s) 112, 270, 282
Bpu10I CCTNAGC 1 cut(s) 900
BpuEI CTTGAG 1 cut(s) 992
BpuMI CCSGG 2 cut(s) 162, 163
BsaHI GRCGYC 1 cut(s) 705
BsaJI CCNNGG 5 cut(s) 79, 160, 161, 334, 570
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 349
Bse1I ACTGG 1 cut(s) 299
BseDI CCNNGG 5 cut(s) 79, 160, 161, 334, 570
BseGI GGATG 3 cut(s) 281, 329, 559
BseLI CCNNNNNNNGG 2 cut(s) 135, 349
BseMII CTCAG 3 cut(s) 684, 891, 1104
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 512
BseX3I CGGCCG 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 1003
Bsh1285I CGRYCG 1 cut(s) 944
BshFI GGCC 3 cut(s) 569, 751, 943
BshNI GGYRCC 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 944
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 2 cut(s) 161, 474
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 2 cut(s) 946, 1114
BslI CCNNNNNNNGG 2 cut(s) 135, 349
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 946, 1114
BsnI GGCC 3 cut(s) 569, 751, 943
BsoBI CYCGRG 2 cut(s) 161, 474
Bsp1286I GDGCHC 2 cut(s) 512, 539
Bsp143I GATC 5 cut(s) 201, 435, 661, 838, 1029
BspACI CCGC 1 cut(s) 210
BspANI GGCC 3 cut(s) 569, 751, 943
BspCNI CTCAG 3 cut(s) 685, 892, 1105
BspLI GGNNCC 8 cut(s) 55, 127, 166, 292, 466, 511, 663, 934
BspPI GGATC 2 cut(s) 656, 669
BspQI GCTCTTC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 509
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 5 cut(s) 79, 160, 161, 334, 570
BssMI GATC 5 cut(s) 201, 435, 661, 838, 1029
BssNAI GTATAC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 705
BssT1I CCWWGG 2 cut(s) 334, 570
Bst1107I GTATAC 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 1 cut(s) 705
BstC8I GCNNGC 4 cut(s) 33, 753, 920, 978
BstDEI CTNAG 4 cut(s) 439, 693, 900, 1113
BstF5I GGATG 3 cut(s) 281, 329, 559
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 5 cut(s) 204, 438, 664, 841, 1032
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 5 cut(s) 201, 435, 661, 838, 1029
BstMCI CGRYCG 1 cut(s) 944
BstMWI GCNNNNNNNGC 3 cut(s) 41, 752, 905
BstNSI RCATGY 2 cut(s) 613, 922
BstSCI CCNGG 2 cut(s) 160, 161
BstSLI GKGCMC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BstZ17I GTATAC 1 cut(s) 268
BstZI CGGCCG 1 cut(s) 941
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 3 cut(s) 569, 751, 943
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 3 cut(s) 281, 329, 559
BtsIMutI CAGTG 1 cut(s) 1020
Cac8I GCNNGC 4 cut(s) 33, 753, 920, 978
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 4 cut(s) 165, 807, 933, 985
Cfr9I CCCGGG 1 cut(s) 161
Csp6I GTAC 1 cut(s) 417
CspCI CAANNNNNGTGG 3 cut(s) 283, 318, 1111
CviAII CATG 6 cut(s) 344, 454, 610, 919, 923, 949
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 4 cut(s) 439, 693, 900, 1113
DpnI GATC 5 cut(s) 203, 437, 663, 840, 1031
DpnII GATC 5 cut(s) 201, 435, 661, 838, 1029
DraIII CACNNNGTG 1 cut(s) 790
DrdI GACNNNNNNGTC 1 cut(s) 697
DseDI GACNNNNNNGTC 1 cut(s) 697
EaeI YGGCCR 2 cut(s) 567, 941
EagI CGGCCG 1 cut(s) 941
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
EclXI CGGCCG 1 cut(s) 941
Eco130I CCWWGG 2 cut(s) 334, 570
Eco47I GGWCC 4 cut(s) 165, 807, 933, 985
Eco52I CGGCCG 1 cut(s) 941
Eco88I CYCGRG 2 cut(s) 161, 474
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 334, 570
EcoT22I ATGCAT 3 cut(s) 281, 924, 1094
ErhI CCWWGG 2 cut(s) 334, 570
FaeI CATG 6 cut(s) 347, 457, 613, 922, 926, 952
FaqI GGGAC 2 cut(s) 946, 1114
FatI CATG 6 cut(s) 343, 453, 609, 918, 922, 948
FbaI TGATCA 1 cut(s) 838
FblI GTMKAC 2 cut(s) 267, 708
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 288, 316, 566
Fsp4HI GCNGC 1 cut(s) 210
GlaI GCGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 3 cut(s) 112, 270, 282
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 569, 751, 943
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 705
Hin1II CATG 6 cut(s) 347, 457, 613, 922, 926, 952
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HinfI GANTC 3 cut(s) 119, 326, 793
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 512, 1046
Hpy166II GTNNAC 5 cut(s) 150, 268, 709, 807, 1120
Hpy188I TCNGA 7 cut(s) 83, 98, 580, 703, 825, 1114, 1128
Hpy188III TCNNGA 2 cut(s) 659, 665
Hpy8I GTNNAC 5 cut(s) 150, 268, 709, 807, 1120
Hpy99I CGWCG 1 cut(s) 681
HpyAV CCTTC 1 cut(s) 998
HpyCH4IV ACGT 2 cut(s) 685, 705
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 752, 905
HpyF3I CTNAG 4 cut(s) 439, 693, 900, 1113
HpySE526I ACGT 2 cut(s) 685, 705
Hsp92I GRCGYC 1 cut(s) 705
Hsp92II CATG 6 cut(s) 347, 457, 613, 922, 926, 952
HspAI GCGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 5 cut(s) 201, 435, 661, 838, 1029
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 2 cut(s) 131, 290
LweI GCATC 4 cut(s) 220, 266, 357, 841
MaeII ACGT 2 cut(s) 685, 705
MaeIII GTNAC 2 cut(s) 179, 688
MalI GATC 5 cut(s) 203, 437, 663, 840, 1031
MboI GATC 5 cut(s) 201, 435, 661, 838, 1029
MboII GAAGA 3 cut(s) 482, 544, 1099
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 512, 539
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 3 cut(s) 360, 779, 1078
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 569
Mph1103I ATGCAT 3 cut(s) 281, 924, 1094
MroXI GAANNNNTTC 1 cut(s) 893
MscI TGGCCA 1 cut(s) 569
MseI TTAA 1 cut(s) 860
MslI CAYNNNNRTG 6 cut(s) 65, 498, 525, 635, 825, 927
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 162, 163
MwoI GCNNNNNNNGC 3 cut(s) 41, 752, 905
NciI CCSGG 2 cut(s) 162, 163
NdeII GATC 5 cut(s) 201, 435, 661, 838, 1029
NlaIII CATG 6 cut(s) 347, 457, 613, 922, 926, 952
NlaIV GGNNCC 8 cut(s) 55, 127, 166, 292, 466, 511, 663, 934
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 2 cut(s) 179, 688
NsiI ATGCAT 3 cut(s) 281, 924, 1094
NspI RCATGY 2 cut(s) 613, 922
OliI CACNNNNGTG 1 cut(s) 635
PaeI GCATGC 1 cut(s) 922
PaeR7I CTCGAG 1 cut(s) 474
PciI ACATGT 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 2 cut(s) 326, 793
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 165
PscI ACATGT 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 165
PspN4I GGNNCC 8 cut(s) 55, 127, 166, 292, 466, 511, 663, 934
PspPI GGNCC 4 cut(s) 165, 807, 933, 985
PspPPI RGGWCCY 1 cut(s) 165
PspXI VCTCGAGB 1 cut(s) 474
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 6 cut(s) 65, 498, 525, 635, 825, 927
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 860
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 5 cut(s) 201, 435, 661, 838, 1029
Sau96I GGNCC 4 cut(s) 165, 807, 933, 985
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 162, 163
SduI GDGCHC 2 cut(s) 512, 539
SfaNI GCATC 4 cut(s) 220, 266, 357, 841
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 4 cut(s) 165, 807, 933, 985
SlaI CTCGAG 1 cut(s) 474
SmaI CCCGGG 1 cut(s) 163
SmiMI CAYNNNNRTG 6 cut(s) 65, 498, 525, 635, 825, 927
SmlI CTYRAG 2 cut(s) 474, 971
SmoI CTYRAG 2 cut(s) 474, 971
SphI GCATGC 1 cut(s) 922
Sse9I AATT 3 cut(s) 360, 779, 1078
SsiI CCGC 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 160, 161
StyI CCWWGG 2 cut(s) 334, 570
TaiI ACGT 2 cut(s) 688, 708
TaqI TCGA 1 cut(s) 475
TasI AATT 3 cut(s) 360, 779, 1078
TatI WGTACW 1 cut(s) 416
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 2 cut(s) 326, 793
Tru1I TTAA 1 cut(s) 860
Tru9I TTAA 1 cut(s) 860
TscAI CASTG 1 cut(s) 1027
TseFI GTSAC 2 cut(s) 179, 688
Tsp45I GTSAC 2 cut(s) 179, 688
TspDTI ATGAA 4 cut(s) 158, 180, 482, 965
TspGWI ACGGA 2 cut(s) 165, 371
TspMI CCCGGG 1 cut(s) 161
TspRI CASTG 1 cut(s) 1027
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 4 cut(s) 165, 807, 933, 985
XceI RCATGY 2 cut(s) 613, 922
XhoI CTCGAG 1 cut(s) 474
XmaI CCCGGG 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 267, 708
XmnI GAANNNNTTC 1 cut(s) 893
ZraI GACGTC 1 cut(s) 706
Zsp2I ATGCAT 3 cut(s) 281, 924, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.