Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007923

Physical Location & Seq

Genomic Coordinates Forward (+)

26445833 .. 26447782

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1172000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCTCCAGTGGGAGAACCTTGGGACTTTGTCAAGGGAGGTGACAGGTGGGGTTCCGGTTCAAAGTCAGAGAACGAGGATGGCGAGATTGATGGAGCTGTTTCAAATGGTGCATTTGAAGATGGCGATGAAAAGTTAGAAGAGCTCTCCAAGTGGACGAAAAGAATGTCCATAGAAATTGGTCCGAGCAGCTTTGCTTCAAGGAAGAAGAAGCGTAAGAAGAGCACGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SURF2

Protein Analysis

78

Amino Acids

8.48

Weight (kDa)

5.46

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14440 AT5G14440 AT5G40570 AT5G40570
fragaria_vesca	FvH4_6g51920
malus_domestica	MD09G1021700.v1.1 MD10G1172000.v1.1 MD17G1021600.v1.1
prunus_persica	Prupe.3G294600_v2.0.a1 Prupe.3G294600_v2.0.a1 Prupe.3G294600_v2.0.a1
pyrus_communis	pycom17g01870
rosa_chinensis	RchiOBHm_Chr2g0173401
rosa_laevigata	RLG00000022186
rosa_multiflora	Rmu_co8519037.1_g000003 Rmu_ssc0000282.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078880
rosa_rugosa	Rorug02G0567900 Rorug02G0568000
rosa_samantha	Rh2AG648500 Rh2BG659100 Rh2CG624400 Rh2DG674300
rosa_wichuraiana	Rw2G053230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	63, 105, 119, 201
AluBI	AGCT	3 cut(s)	98, 145, 192
AluI	AGCT	3 cut(s)	98, 145, 192
Alw21I	GWGCWC	2 cut(s)	147, 227
ApeKI	GCWGC	1 cut(s)	189
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	2 cut(s)	147, 227
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	3 cut(s)	74, 86, 116
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	201
BsiHKAI	GWGCWC	2 cut(s)	147, 227
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	147, 227
BspLI	GGNNCC	1 cut(s)	55
BspQI	GCTCTTC	2 cut(s)	135, 215
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	135, 215
BstF5I	GGATG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	3 cut(s)	98, 145, 192
CviKI_1	RGCY	3 cut(s)	98, 145, 192
Eam1104I	CTCTTC	2 cut(s)	135, 215
EarI	CTCTTC	2 cut(s)	135, 215
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	234
FaiI	YATR	2 cut(s)	173, 232
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	234
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	70, 186
Hpy8I	GTNNAC	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	234
LguI	GCTCTTC	2 cut(s)	135, 215
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	3 cut(s)	21, 31, 70
Lsp1109I	GCAGC	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	41
MboII	GAAGA	5 cut(s)	131, 152, 217, 220, 232
MhlI	GDGCHC	2 cut(s)	147, 227
MluCI	AATT	1 cut(s)	177
MnlI	CCTC	3 cut(s)	15, 32, 70
MspI	CCGG	1 cut(s)	57
NlaIII	CATG	1 cut(s)	234
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	41
PciSI	GCTCTTC	2 cut(s)	135, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	2 cut(s)	135, 215
SatI	GCNGC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	147, 227
SetI	ASST	6 cut(s)	22, 43, 50, 100, 147, 194
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	1 cut(s)	177
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	20
TasI	AATT	1 cut(s)	177
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	15
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.