RchiOBHm_Chr2g0173401

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007923
Physical Location & Seq
Forward (+)
86430368 .. 86433060
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54062

Sequence Viewer

Length: 891 bp
ATGACCCAATTTCTCTCTCGCTCCCTCTCTCTCTATAACTGCGAAGGTCATAGTAGCTATAGCAAACCAGCAATGGCCACGAGTGAGGAGAAGACCAACAATACTAAAGAAGGGAACAACCTACTGGGCTCGCCGACCTTCAAGGAGCTCGATAATGGTCGCTTCCAGTGCGTCGAGACTGGCCACCAATTACTGGCCAAAGACATTGAATCCTACTCTCAGAGCAAACGGTGCCGTTTGGGTCTCATCGAATTCGCACTCTCTCATAAGAAGCCTCCTCTCAACATGTTCAAGCAGGACCCTCTTTCTCGTTCAAAGTTGGTGTGTAAGCTAACCGAGGATACCATCAATAAGTCAGAGGAACACATTTGGAAGCATATTAATGGGAAACGATTCCTCAACAAACTGGAAGAAATGGAAGAACAAAAGTTGACAGTAAATGAAATGGAAGAAGAGCTGGATGATCACAAACCTGAAAAAGTATCTAAGCCAGGCAAAGATGGTGCCAGGAAGGAGAAAAAGGAGAAGAAAAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGCAAAGGAGGAGGATGATGGTGATGATGAGATTATCTCTGAAATACCCAAGTCTCCTAGTGAGGAAAATGATTCTGAAGAAGCTGAGTTCTGGATCCCTCCACCAGGAGCACGTTGGGATTTTGATGATGGCGGTGACAGATGGGGTTCCGATTCAGAGTCAGTGAGCAATGACGAGAACAAAAGTGACGAGGTTGATGGAATTGTTGAAGATGATGATGAGGAGTCAGAAGAGATCTCAATGCGGACAAAAAGAATGTCCATAGAAATTGGACCAAGCAGCTTTGCATCCAGAAAGAAGAAGAGTAAAAAGAACACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

296

Amino Acids

33.9

Weight (kDa)

5.12

Isoelectric Point (pI)

67.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 36 - 291 1.1e-52 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 231, 503
AccB7I CCANNNNNTGG 1 cut(s) 193
AciI CCGC 2 cut(s) 699, 811
AclWI GGATC 2 cut(s) 655, 668
AcoI YGGCCR 3 cut(s) 75, 181, 195
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 663
AfiI CCNNNNNNNGG 2 cut(s) 193, 671
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 5 cut(s) 142, 209, 292, 315, 776
AjnI CCWGG 3 cut(s) 490, 506, 670
AluBI AGCT 6 cut(s) 57, 148, 331, 457, 650, 849
AluI AGCT 6 cut(s) 57, 148, 331, 457, 650, 849
Alw21I GWGCWC 2 cut(s) 150, 679
Alw26I GTCTC 3 cut(s) 170, 248, 624
AlwI GGATC 2 cut(s) 655, 668
AoxI GGCC 3 cut(s) 75, 181, 195
ApeKI GCWGC 1 cut(s) 846
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AseI ATTAAT 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 298, 839
AsuHPI GGTGA 2 cut(s) 599, 713
AvaII GGWCC 2 cut(s) 298, 839
BalI TGGCCA 3 cut(s) 77, 183, 197
BamHI GGATCC 1 cut(s) 660
BanI GGYRCC 2 cut(s) 231, 503
BanII GRGCYC 2 cut(s) 131, 150
BauI CACGAG 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 2 cut(s) 150, 679
BbvI GCAGC 1 cut(s) 858
BccI CCATC 6 cut(s) 353, 494, 578, 689, 702, 758
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 3 cut(s) 492, 508, 672
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 3 cut(s) 170, 248, 624
BfaI CTAG 1 cut(s) 624
BfmI CTRYAG 1 cut(s) 58
BfuI GTATCC 1 cut(s) 334
BglII AGATCT 1 cut(s) 801
BisI GCNGC 1 cut(s) 847
BlsI GCNGC 1 cut(s) 848
Bme1390I CCNGG 3 cut(s) 492, 508, 672
Bme18I GGWCC 2 cut(s) 298, 839
BmgT120I GGNCC 2 cut(s) 298, 839
BmiI GGNNCC 5 cut(s) 233, 300, 505, 662, 715
BmrFI CCNGG 3 cut(s) 492, 508, 672
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 863
BmuI ACTGGG 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 587, 619
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 671
Bse1I ACTGG 5 cut(s) 129, 166, 184, 198, 411
Bse3DI GCAATG 2 cut(s) 78, 742
BseBI CCWGG 3 cut(s) 492, 508, 672
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 3 cut(s) 466, 586, 854
BseLI CCNNNNNNNGG 2 cut(s) 193, 671
BseMI GCAATG 2 cut(s) 78, 742
BseMII CTCAG 2 cut(s) 233, 642
BseNI ACTGG 5 cut(s) 129, 166, 184, 198, 411
BseRI GAGGAG 8 cut(s) 101, 267, 569, 572, 575, 578, 590, 803
BseXI GCAGC 1 cut(s) 858
BshFI GGCC 3 cut(s) 77, 183, 197
BshNI GGYRCC 2 cut(s) 231, 503
BsiHKAI GWGCWC 2 cut(s) 150, 679
BslI CCNNNNNNNGG 2 cut(s) 193, 671
BsmAI GTCTC 3 cut(s) 170, 248, 624
BsnI GGCC 3 cut(s) 77, 183, 197
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 3 cut(s) 131, 150, 679
Bsp143I GATC 3 cut(s) 463, 660, 801
BspACI CCGC 2 cut(s) 699, 811
BspANI GGCC 3 cut(s) 77, 183, 197
BspCNI CTCAG 2 cut(s) 232, 643
BspLI GGNNCC 5 cut(s) 233, 300, 505, 662, 715
BspPI GGATC 2 cut(s) 655, 668
BspQI GCTCTTC 1 cut(s) 447
BspT107I GGYRCC 2 cut(s) 231, 503
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 78, 742
BsrI ACTGG 5 cut(s) 129, 166, 184, 198, 411
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 463, 660, 801
BssSI CACGAG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 79
Bst2UI CCWGG 3 cut(s) 492, 508, 672
Bst4CI ACNGT 2 cut(s) 231, 436
Bst6I CTCTTC 3 cut(s) 447, 792, 863
BstAPI GCANNNNNTGC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 3 cut(s) 219, 486, 651
BstENI CCTNNNNNAGG 1 cut(s) 669
BstF5I GGATG 3 cut(s) 466, 586, 854
BstKTI GATC 3 cut(s) 466, 663, 804
BstMAI GTCTC 3 cut(s) 170, 248, 624
BstMBI GATC 3 cut(s) 463, 660, 801
BstMWI GCNNNNNNNGC 2 cut(s) 168, 231
BstNI CCWGG 3 cut(s) 492, 508, 672
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 3 cut(s) 490, 506, 670
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 858
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 2 cut(s) 660, 801
BstYI RGATCY 2 cut(s) 660, 801
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 77, 183, 197
BtsCI GGATG 3 cut(s) 466, 586, 854
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 3 cut(s) 173, 735, 882
Cac8I GCNNGC 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 298, 839
CseI GACGC 1 cut(s) 160
CviAII CATG 2 cut(s) 286, 888
DdeI CTNAG 3 cut(s) 219, 486, 651
DpnI GATC 3 cut(s) 465, 662, 803
DpnII GATC 3 cut(s) 463, 660, 801
EaeI YGGCCR 3 cut(s) 75, 181, 195
Eam1104I CTCTTC 3 cut(s) 447, 792, 863
EarI CTCTTC 3 cut(s) 447, 792, 863
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 131, 150
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 298, 839
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 490, 506, 670
EcoT38I GRGCYC 2 cut(s) 131, 150
FaeI CATG 2 cut(s) 289, 891
FaiI YATR 8 cut(s) 36, 51, 60, 267, 287, 378, 830, 889
FatI CATG 2 cut(s) 285, 887
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 847
FokI GGATG 3 cut(s) 473, 593, 841
FriOI GRGCYC 2 cut(s) 131, 150
Fsp4HI GCNGC 1 cut(s) 847
FspBI CTAG 1 cut(s) 624
GluI GCNGC 1 cut(s) 847
HaeIII GGCC 3 cut(s) 77, 183, 197
HgaI GACGC 1 cut(s) 160
Hin1II CATG 2 cut(s) 289, 891
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 6 cut(s) 209, 393, 638, 719, 725, 791
HphI GGTGA 2 cut(s) 599, 713
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 7 cut(s) 222, 358, 607, 643, 718, 724, 796
Hpy188III TCNNGA 3 cut(s) 175, 658, 858
Hpy8I GTNNAC 1 cut(s) 432
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 5 cut(s) 38, 104, 148, 505, 544
HpyCH4III ACNGT 2 cut(s) 231, 436
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 2 cut(s) 854, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 231
HpyF3I CTNAG 3 cut(s) 219, 486, 651
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 2 cut(s) 289, 891
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 463, 660, 801
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 3 cut(s) 26, 145, 674
Lsp1109I GCAGC 1 cut(s) 858
LweI GCATC 1 cut(s) 863
MaeI CTAG 1 cut(s) 624
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 2 cut(s) 701, 752
MalI GATC 3 cut(s) 465, 662, 803
MboI GATC 3 cut(s) 463, 660, 801
MflI RGATCY 2 cut(s) 660, 801
MhlI GDGCHC 3 cut(s) 131, 150, 679
MlsI TGGCCA 3 cut(s) 77, 183, 197
MluCI AATT 5 cut(s) 8, 188, 251, 768, 834
MluNI TGGCCA 3 cut(s) 77, 183, 197
MlyI GAGTC 2 cut(s) 734, 800
Mox20I TGGCCA 3 cut(s) 77, 183, 197
MroXI GAANNNNTTC 1 cut(s) 392
MscI TGGCCA 3 cut(s) 77, 183, 197
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 3 cut(s) 77, 183, 197
MspR9I CCNGG 3 cut(s) 492, 508, 672
MvaI CCWGG 3 cut(s) 492, 508, 672
MwoI GCNNNNNNNGC 2 cut(s) 168, 231
NdeII GATC 3 cut(s) 463, 660, 801
NlaIII CATG 2 cut(s) 289, 891
NlaIV GGNNCC 5 cut(s) 233, 300, 505, 662, 715
NmuCI GTSAC 2 cut(s) 701, 752
NspI RCATGY 1 cut(s) 289
PciI ACATGT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 4 cut(s) 209, 393, 638, 719
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 1 cut(s) 848
PleI GAGTC 2 cut(s) 733, 799
PpsI GAGTC 2 cut(s) 733, 799
PpuMI RGGWCCY 1 cut(s) 298
PscI ACATGT 1 cut(s) 285
PshBI ATTAAT 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 3 cut(s) 490, 506, 670
PspGI CCWGG 3 cut(s) 490, 506, 670
PspN4I GGNNCC 5 cut(s) 233, 300, 505, 662, 715
PspPI GGNCC 2 cut(s) 298, 839
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 2 cut(s) 660, 801
RseI CAYNNNNRTG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 847
Sau3AI GATC 3 cut(s) 463, 660, 801
Sau96I GGNCC 2 cut(s) 298, 839
SchI GAGTC 2 cut(s) 734, 800
ScrFI CCNGG 3 cut(s) 492, 508, 672
SduI GDGCHC 3 cut(s) 131, 150, 679
SfaNI GCATC 1 cut(s) 863
SfcI CTRYAG 1 cut(s) 58
SinI GGWCC 2 cut(s) 298, 839
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 5 cut(s) 8, 188, 251, 768, 834
SsiI CCGC 2 cut(s) 699, 811
SspMI CTAG 1 cut(s) 624
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 490, 506, 670
TaaI ACNGT 2 cut(s) 231, 436
TaiI ACGT 1 cut(s) 682
TaqI TCGA 3 cut(s) 150, 174, 249
TasI AATT 5 cut(s) 8, 188, 251, 768, 834
TfiI GAWTC 4 cut(s) 209, 393, 638, 719
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 173, 735, 889
TseFI GTSAC 2 cut(s) 701, 752
TseI GCWGC 1 cut(s) 846
Tsp45I GTSAC 2 cut(s) 701, 752
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 3 cut(s) 173, 735, 889
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 298, 839
VspI ATTAAT 1 cut(s) 381
XagI CCTNNNNNAGG 1 cut(s) 669
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 678
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.