Rmu_co8519037.1_g000003

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8519037.1
OG0007923
Physical Location & Seq
Reverse (-)
3377 .. 5221
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8519037.1_g000003.1.cds

Sequence Viewer

Length: 597 bp
atgttcaagcaggaccctctttctcgttcaaagttggtgtgtaagctaaccgaggataccatcaataagtcagaggaacacatttggaagcatattaatgggaaacgattcctcaacaaactggaagaaatggaagaacaaaagttaacagtaaatgaaatggaagaagagctggatgatcacaaacctgaaaaagtatctaagccaggcaaagatggtgccaggaaggagaaaaaggagaagaaaaagaagaagaagaagaaggaggaggaggcaaaggaggaggatgatggtgatgatgagattatctctgaaatacccaagtctcctagtgaggaaaatgattctgaagaagctgagttctggatccctccaccaggagcacgttgggattttgatgatggcggtgacagatggggttccgattcagagtcagagagcaatgacgagaacaaaagtggcgaggttgatggaattgttgaagatgatgatgaggagtcagaagagatctcaatgcggacaaaaagaatgtccatagaaattggaccaagcagctttgcatccagaaagaagaagagtaaaaagaacactgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

198

Amino Acids

22.85

Weight (kDa)

4.84

Isoelectric Point (pI)

76.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AciI CCGC 2 cut(s) 405, 517
AclWI GGATC 2 cut(s) 361, 374
AcuI CTGAAG 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 7, 30, 482
AjnI CCWGG 3 cut(s) 205, 221, 376
AluBI AGCT 4 cut(s) 46, 172, 356, 555
AluI AGCT 4 cut(s) 46, 172, 356, 555
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 2 cut(s) 361, 374
ApeKI GCWGC 1 cut(s) 552
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AseI ATTAAT 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 13, 545
AsuHPI GGTGA 2 cut(s) 305, 419
AvaII GGWCC 2 cut(s) 13, 545
BamHI GGATCC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 564
BccI CCATC 6 cut(s) 68, 209, 284, 395, 408, 464
BciT130I CCWGG 3 cut(s) 207, 223, 378
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 49
BglII AGATCT 1 cut(s) 507
BisI GCNGC 1 cut(s) 553
BlsI GCNGC 1 cut(s) 554
Bme1390I CCNGG 3 cut(s) 207, 223, 378
Bme18I GGWCC 2 cut(s) 13, 545
BmgT120I GGNCC 2 cut(s) 13, 545
BmiI GGNNCC 4 cut(s) 15, 220, 368, 421
BmrFI CCNGG 3 cut(s) 207, 223, 378
BmsI GCATC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 448
BseBI CCWGG 3 cut(s) 207, 223, 378
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 181, 292, 560
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 4 cut(s) 281, 284, 296, 509
BseXI GCAGC 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 3 cut(s) 178, 366, 507
BspACI CCGC 2 cut(s) 405, 517
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 4 cut(s) 15, 220, 368, 421
BspPI GGATC 2 cut(s) 361, 374
BspQI GCTCTTC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 448
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 178, 366, 507
Bst2UI CCWGG 3 cut(s) 207, 223, 378
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 3 cut(s) 162, 498, 569
BstDEI CTNAG 2 cut(s) 201, 357
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 181, 292, 560
BstKTI GATC 3 cut(s) 181, 369, 510
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 3 cut(s) 178, 366, 507
BstNI CCWGG 3 cut(s) 207, 223, 378
BstSCI CCNGG 3 cut(s) 205, 221, 376
BstV1I GCAGC 1 cut(s) 564
BstX2I RGATCY 2 cut(s) 366, 507
BstYI RGATCY 2 cut(s) 366, 507
BsuI GTATCC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 181, 292, 560
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 588
Cfr13I GGNCC 2 cut(s) 13, 545
CviAII CATG 1 cut(s) 594
CviJI RGCY 5 cut(s) 46, 172, 205, 356, 555
CviKI_1 RGCY 5 cut(s) 46, 172, 205, 356, 555
DdeI CTNAG 2 cut(s) 201, 357
DpnI GATC 3 cut(s) 180, 368, 509
DpnII GATC 3 cut(s) 178, 366, 507
Eam1104I CTCTTC 3 cut(s) 162, 498, 569
EarI CTCTTC 3 cut(s) 162, 498, 569
Eco47I GGWCC 2 cut(s) 13, 545
Eco57I CTGAAG 1 cut(s) 369
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 205, 221, 376
FaeI CATG 1 cut(s) 597
FaiI YATR 3 cut(s) 93, 536, 595
FatI CATG 1 cut(s) 593
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 3 cut(s) 188, 299, 547
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 553
Hin1II CATG 1 cut(s) 597
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 5 cut(s) 108, 344, 425, 431, 497
HpaI GTTAAC 1 cut(s) 147
HphI GGTGA 2 cut(s) 305, 419
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 7 cut(s) 73, 313, 349, 424, 430, 436, 502
Hpy188III TCNNGA 2 cut(s) 364, 564
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 220, 256
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 2 cut(s) 560, 593
HpyF3I CTNAG 2 cut(s) 201, 357
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 1 cut(s) 597
Ksp22I TGATCA 1 cut(s) 178
KspAI GTTAAC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 178, 366, 507
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 1 cut(s) 569
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 180, 368, 509
MboI GATC 3 cut(s) 178, 366, 507
MflI RGATCY 2 cut(s) 366, 507
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 2 cut(s) 474, 540
MlyI GAGTC 2 cut(s) 440, 506
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 2 cut(s) 96, 146
MslI CAYNNNNRTG 1 cut(s) 96
MspR9I CCNGG 3 cut(s) 207, 223, 378
MvaI CCWGG 3 cut(s) 207, 223, 378
NdeII GATC 3 cut(s) 178, 366, 507
NlaIII CATG 1 cut(s) 597
NlaIV GGNNCC 4 cut(s) 15, 220, 368, 421
NmuCI GTSAC 1 cut(s) 407
PciSI GCTCTTC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 3 cut(s) 108, 344, 425
PkrI GCNGC 1 cut(s) 554
PleI GAGTC 2 cut(s) 439, 505
PpsI GAGTC 2 cut(s) 439, 505
PpuMI RGGWCCY 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 205, 221, 376
PspGI CCWGG 3 cut(s) 205, 221, 376
PspN4I GGNNCC 4 cut(s) 15, 220, 368, 421
PspPI GGNCC 2 cut(s) 13, 545
PspPPI RGGWCCY 1 cut(s) 13
PsuI RGATCY 2 cut(s) 366, 507
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 96, 146
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 3 cut(s) 178, 366, 507
Sau96I GGNCC 2 cut(s) 13, 545
SchI GAGTC 2 cut(s) 440, 506
ScrFI CCNGG 3 cut(s) 207, 223, 378
SduI GDGCHC 1 cut(s) 385
SetI ASST 7 cut(s) 48, 174, 190, 358, 388, 468, 557
SfaNI GCATC 1 cut(s) 569
SinI GGWCC 2 cut(s) 13, 545
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 2 cut(s) 474, 540
SsiI CCGC 2 cut(s) 405, 517
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 205, 221, 376
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 388
TasI AATT 2 cut(s) 474, 540
TfiI GAWTC 3 cut(s) 108, 344, 425
Tru1I TTAA 2 cut(s) 96, 146
Tru9I TTAA 2 cut(s) 96, 146
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 1 cut(s) 552
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 13, 545
VspI ATTAAT 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.