Rh2BG659100

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007923
Physical Location & Seq
Forward (+)
87513396 .. 87515875
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG659100.1

Sequence Viewer

Length: 816 bp
ATGGCCACGAGTGAGGAGAAGACCAGCAATACTAAAGAAGGGAACAACCTACTGGGCTCGCCGACCTTCAAGGAGCTCGATAATGGTCGCTTCCAGTGCGTTGAGACTGGCCACCAATTACTGGCCAAAGACATTGAATCCTACTCTCAGAGCAAACGGTGCCGTTTGGGTCTCATCGAATTCGCACTCTCTCATAAGAAGCCTCCTCTCAACATGTTCAAGCAGGACCCTCTTTCTCGTTCAAAGTTGGTGTGTAAGCTAACCGAGGATACCATCAATAAGTCAGAGGAACACATTTGGAAGCATATTAATGGGAAACGATTCCTCAACAAACTGGAAGAAATGGAAGAACAAAAGCTAACAGTAAATGAAATGGAAGAAGAGCTGGATGATCAAAAACCTGAAAAAGTATCTAAGCCAGGCAAAGATGGTGCCAGGAAGGAGAAAAAGGAGAAGAAAAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGCAAAGGAGGAGGATGATGGTGATGATGAGATTATCTCTGAAATACCCAAGTCTCCTAGTGAGGAAAATGATTCTGAAGAAGCTGAGTTCTGGATCCCTCCACCAGGAGCACGTTGGGATTTTGATGATGGCGGTGACAGATGGGGTTCCGATTCAGAGTCAGAGAGCAATGACGAGAACAAAAGTGGCGAGGTTGATGGAATTGTTGAAGATGATGATGAGGAGTCAGAAGAGATCTCAATGCGGACAAAAAGAATGTCCATAGAAATTGGACCAAGCAGCTTTGCATCCAGAAAGAAGAAGAGTAAAAAGAACACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

271

Amino Acids

31.02

Weight (kDa)

4.95

Isoelectric Point (pI)

70.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 12 - 267 8.9e-55 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 159, 431
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 2 cut(s) 624, 736
AclWI GGATC 2 cut(s) 580, 593
AcoI YGGCCR 3 cut(s) 3, 109, 123
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 588
AfiI CCNNNNNNNGG 2 cut(s) 121, 596
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 5 cut(s) 70, 137, 220, 243, 701
AjnI CCWGG 3 cut(s) 418, 434, 595
AluBI AGCT 6 cut(s) 76, 259, 358, 385, 575, 774
AluI AGCT 6 cut(s) 76, 259, 358, 385, 575, 774
Alw21I GWGCWC 2 cut(s) 78, 604
Alw26I GTCTC 3 cut(s) 98, 176, 549
AlwI GGATC 2 cut(s) 580, 593
AoxI GGCC 3 cut(s) 3, 109, 123
ApeKI GCWGC 1 cut(s) 771
ApoI RAATTY 1 cut(s) 179
ArsI GACNNNNNNTTYG 2 cut(s) 734, 766
AseI ATTAAT 1 cut(s) 309
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 226, 764
AsuHPI GGTGA 2 cut(s) 524, 638
AvaII GGWCC 2 cut(s) 226, 764
BalI TGGCCA 3 cut(s) 5, 111, 125
BamHI GGATCC 1 cut(s) 585
BanI GGYRCC 2 cut(s) 159, 431
BanII GRGCYC 2 cut(s) 59, 78
BauI CACGAG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 2 cut(s) 78, 604
BbvI GCAGC 1 cut(s) 783
BccI CCATC 6 cut(s) 281, 422, 503, 614, 627, 683
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 3 cut(s) 420, 436, 597
BciVI GTATCC 1 cut(s) 262
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 3 cut(s) 98, 176, 549
BfaI CTAG 1 cut(s) 549
BfuI GTATCC 1 cut(s) 262
BglII AGATCT 1 cut(s) 726
BisI GCNGC 1 cut(s) 772
BlsI GCNGC 1 cut(s) 773
Bme1390I CCNGG 3 cut(s) 420, 436, 597
Bme18I GGWCC 2 cut(s) 226, 764
BmgT120I GGNCC 2 cut(s) 226, 764
BmiI GGNNCC 5 cut(s) 161, 228, 433, 587, 640
BmrFI CCNGG 3 cut(s) 420, 436, 597
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 788
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 596
Bse1I ACTGG 5 cut(s) 57, 94, 112, 126, 339
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 3 cut(s) 420, 436, 597
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 394, 511, 779
BseLI CCNNNNNNNGG 2 cut(s) 121, 596
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 2 cut(s) 161, 567
BseNI ACTGG 5 cut(s) 57, 94, 112, 126, 339
BseRI GAGGAG 8 cut(s) 29, 195, 494, 497, 500, 503, 515, 728
BseXI GCAGC 1 cut(s) 783
BshFI GGCC 3 cut(s) 5, 111, 125
BshNI GGYRCC 2 cut(s) 159, 431
BsiHKAI GWGCWC 2 cut(s) 78, 604
BslI CCNNNNNNNGG 2 cut(s) 121, 596
BsmAI GTCTC 3 cut(s) 98, 176, 549
BsnI GGCC 3 cut(s) 5, 111, 125
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 3 cut(s) 59, 78, 604
Bsp143I GATC 3 cut(s) 391, 585, 726
BspACI CCGC 2 cut(s) 624, 736
BspANI GGCC 3 cut(s) 5, 111, 125
BspCNI CTCAG 2 cut(s) 160, 568
BspLI GGNNCC 5 cut(s) 161, 228, 433, 587, 640
BspPI GGATC 2 cut(s) 580, 593
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 2 cut(s) 159, 431
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 5 cut(s) 57, 94, 112, 126, 339
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 391, 585, 726
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst2UI CCWGG 3 cut(s) 420, 436, 597
Bst4CI ACNGT 2 cut(s) 159, 364
Bst6I CTCTTC 3 cut(s) 375, 717, 788
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 147, 414, 576
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 3 cut(s) 394, 511, 779
BstKTI GATC 3 cut(s) 394, 588, 729
BstMAI GTCTC 3 cut(s) 98, 176, 549
BstMBI GATC 3 cut(s) 391, 585, 726
BstMWI GCNNNNNNNGC 2 cut(s) 96, 159
BstNI CCWGG 3 cut(s) 420, 436, 597
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 418, 434, 595
BstV1I GCAGC 1 cut(s) 783
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 585, 726
BstYI RGATCY 2 cut(s) 585, 726
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 3 cut(s) 5, 111, 125
BtsCI GGATG 3 cut(s) 394, 511, 779
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 2 cut(s) 101, 807
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 226, 764
CviAII CATG 2 cut(s) 214, 813
DdeI CTNAG 3 cut(s) 147, 414, 576
DpnI GATC 3 cut(s) 393, 587, 728
DpnII GATC 3 cut(s) 391, 585, 726
EaeI YGGCCR 3 cut(s) 3, 109, 123
Eam1104I CTCTTC 3 cut(s) 375, 717, 788
EarI CTCTTC 3 cut(s) 375, 717, 788
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 2 cut(s) 59, 78
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 226, 764
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 418, 434, 595
EcoT38I GRGCYC 2 cut(s) 59, 78
FaeI CATG 2 cut(s) 217, 816
FaiI YATR 5 cut(s) 195, 215, 306, 755, 814
FatI CATG 2 cut(s) 213, 812
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 772
FokI GGATG 3 cut(s) 401, 518, 766
FriOI GRGCYC 2 cut(s) 59, 78
Fsp4HI GCNGC 1 cut(s) 772
FspBI CTAG 1 cut(s) 549
GluI GCNGC 1 cut(s) 772
HaeIII GGCC 3 cut(s) 5, 111, 125
Hin1II CATG 2 cut(s) 217, 816
HinfI GANTC 6 cut(s) 137, 321, 563, 644, 650, 716
HphI GGTGA 2 cut(s) 524, 638
Hpy188I TCNGA 8 cut(s) 150, 286, 532, 568, 643, 649, 655, 721
Hpy188III TCNNGA 2 cut(s) 583, 783
HpyAV CCTTC 4 cut(s) 32, 76, 433, 469
HpyCH4III ACNGT 2 cut(s) 159, 364
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 2 cut(s) 779, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 159
HpyF3I CTNAG 3 cut(s) 147, 414, 576
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 2 cut(s) 217, 816
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 3 cut(s) 391, 585, 726
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 73, 599
Lsp1109I GCAGC 1 cut(s) 783
LweI GCATC 1 cut(s) 788
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 1 cut(s) 626
MalI GATC 3 cut(s) 393, 587, 728
MboI GATC 3 cut(s) 391, 585, 726
MflI RGATCY 2 cut(s) 585, 726
MhlI GDGCHC 3 cut(s) 59, 78, 604
MlsI TGGCCA 3 cut(s) 5, 111, 125
MluCI AATT 4 cut(s) 116, 179, 693, 759
MluNI TGGCCA 3 cut(s) 5, 111, 125
MlyI GAGTC 2 cut(s) 659, 725
Mox20I TGGCCA 3 cut(s) 5, 111, 125
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 3 cut(s) 5, 111, 125
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 3 cut(s) 5, 111, 125
MspR9I CCNGG 3 cut(s) 420, 436, 597
MvaI CCWGG 3 cut(s) 420, 436, 597
MwoI GCNNNNNNNGC 2 cut(s) 96, 159
NdeII GATC 3 cut(s) 391, 585, 726
NlaIII CATG 2 cut(s) 217, 816
NlaIV GGNNCC 5 cut(s) 161, 228, 433, 587, 640
NmuCI GTSAC 1 cut(s) 626
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 137, 321, 563, 644
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 773
PleI GAGTC 2 cut(s) 658, 724
PpsI GAGTC 2 cut(s) 658, 724
PpuMI RGGWCCY 1 cut(s) 226
PscI ACATGT 1 cut(s) 213
PshBI ATTAAT 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 3 cut(s) 418, 434, 595
PspGI CCWGG 3 cut(s) 418, 434, 595
PspN4I GGNNCC 5 cut(s) 161, 228, 433, 587, 640
PspPI GGNCC 2 cut(s) 226, 764
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 2 cut(s) 585, 726
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 772
Sau3AI GATC 3 cut(s) 391, 585, 726
Sau96I GGNCC 2 cut(s) 226, 764
SchI GAGTC 2 cut(s) 659, 725
ScrFI CCNGG 3 cut(s) 420, 436, 597
SduI GDGCHC 3 cut(s) 59, 78, 604
SfaNI GCATC 1 cut(s) 788
SinI GGWCC 2 cut(s) 226, 764
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 4 cut(s) 116, 179, 693, 759
SsiI CCGC 2 cut(s) 624, 736
SspMI CTAG 1 cut(s) 549
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 418, 434, 595
TaaI ACNGT 2 cut(s) 159, 364
TaiI ACGT 1 cut(s) 607
TaqI TCGA 2 cut(s) 78, 177
TasI AATT 4 cut(s) 116, 179, 693, 759
TfiI GAWTC 4 cut(s) 137, 321, 563, 644
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 101, 814
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 771
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 2 cut(s) 101, 814
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 226, 764
VspI ATTAAT 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 603
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.