Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007923

Physical Location & Seq

Genomic Coordinates Forward (+)

26271432 .. 26273777

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G294600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGACGAGTGAGGAGAAGGCGAAGGAGAAGGAAGGGAGCAACCTACTGGGCTCGCCGACCTTCAAGGAGCTCGAAAATGGTCGATTCCAGTGCGTTGAGACAGGCCATGAAGTGGTGGCCAAAGACAAGGAAATTTACTCTCAGAGCAAGCGGTGCCGTTTGGGTCTGGTCGACTTTGCCCTTTCCCATAAGAAACCTCCTCTCAACATGTTCAAGCAAGACCCTCTTTCTCGTTCAAAGTTGATGTGTAAGCTTACCGGGGATACTATCAATAAGTCAGAGGAACACATTTGGAAGCATATCAATGGCAAACGGTTCCTCAACAAGCTAGAAGAAAAGGAAGAACAGAAGCTAAAGCCGGATGGGATGGTAGAAAAGCTGGATGATCAGAACCCTGAAATAGTACCTGAGCCGGACACAGATGGTGTCAGAAAGAAAAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGGAAAATGGAGTTGATGAGACTATCTCTGACATAAGGAAGTCTTCTGATGAGGAAAGTGATTTAGAAGAAACTGACTTTTGGATGCCTCCAGTAGGAGAACGTTGGGACTTTGATGAGGGAGGCGACAGATGGGGTTCCGGTTCAGATTCAGAGAACGAGGATGACGAAGTTGATGGAGCTGTTTCAGATGGTGTAGTTGAAGATGGTGAGGAGGAGTCAGAAGAGCTATCCATGCGGACAAAAAGAATGTCCATAGAAATTGGACCAAGCAGCTTTGCTTCAAGGAAGAAGAAGAGTAAAAAGAGCACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SURF2

Protein Analysis

264

Amino Acids

29.93

Weight (kDa)

5.47

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14440 AT5G14440 AT5G40570 AT5G40570
fragaria_vesca	FvH4_6g51920
malus_domestica	MD09G1021700.v1.1 MD10G1172000.v1.1 MD17G1021600.v1.1
prunus_persica	Prupe.3G294600_v2.0.a1 Prupe.3G294600_v2.0.a1 Prupe.3G294600_v2.0.a1
pyrus_communis	pycom17g01870
rosa_chinensis	RchiOBHm_Chr2g0173401
rosa_laevigata	RLG00000022186
rosa_multiflora	Rmu_co8519037.1_g000003 Rmu_ssc0000282.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078880
rosa_rugosa	Rorug02G0567900 Rorug02G0568000
rosa_samantha	Rh2AG648500 Rh2BG659100 Rh2CG624400 Rh2DG674300
rosa_wichuraiana	Rw2G053230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	2 cut(s)	154, 712
AclI	AACGTT	1 cut(s)	577
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	135
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	115, 569
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	5 cut(s)	67, 217, 240, 677, 759
AluBI	AGCT	8 cut(s)	73, 256, 331, 355, 382, 656, 703, 750
AluI	AGCT	8 cut(s)	73, 256, 331, 355, 382, 656, 703, 750
Alw21I	GWGCWC	2 cut(s)	75, 785
Alw26I	GTCTC	2 cut(s)	95, 488
AoxI	GGCC	2 cut(s)	106, 120
ApeKI	GCWGC	1 cut(s)	747
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
AspS9I	GGNCC	1 cut(s)	740
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	740
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	56, 75
BbsI	GAAGAC	2 cut(s)	458, 510
Bbv12I	GWGCWC	2 cut(s)	75, 785
BbvI	GCAGC	1 cut(s)	759
BccI	CCATC	7 cut(s)	359, 364, 419, 600, 644, 659, 674
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	95, 488
BfaI	CTAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	748
BlsI	GCNGC	1 cut(s)	749
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	3 cut(s)	158, 320, 613
BmrFI	CCNGG	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	549
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	458, 510
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 569
Bse1I	ACTGG	3 cut(s)	54, 91, 566
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	5 cut(s)	370, 375, 391, 564, 643
BseLI	CCNNNNNNNGG	2 cut(s)	115, 569
BseMII	CTCAG	2 cut(s)	158, 402
BseNI	ACTGG	3 cut(s)	54, 91, 566
BseRI	GAGGAG	4 cut(s)	29, 192, 701, 704
BseXI	GCAGC	1 cut(s)	759
BshFI	GGCC	2 cut(s)	108, 122
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	75, 785
BsiSI	CCGG	4 cut(s)	261, 362, 416, 615
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	115, 569
BsmAI	GTCTC	2 cut(s)	95, 488
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	108, 122
Bsp1286I	GDGCHC	3 cut(s)	56, 75, 785
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	2 cut(s)	154, 712
BspANI	GGCC	2 cut(s)	108, 122
BspCNI	CTCAG	2 cut(s)	157, 403
BspLI	GGNNCC	3 cut(s)	158, 320, 613
BspQI	GCTCTTC	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	54, 91, 566
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	2 cut(s)	693, 764
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	56, 152
BstDEI	CTNAG	2 cut(s)	144, 411
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	5 cut(s)	370, 375, 391, 564, 643
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	2 cut(s)	95, 488
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 709
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	759
BstV2I	GAAGAC	2 cut(s)	458, 510
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	108, 122
BtsCI	GGATG	5 cut(s)	370, 375, 391, 564, 643
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	56, 152
Cfr13I	GGNCC	1 cut(s)	740
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	4 cut(s)	110, 211, 709, 789
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	144, 411
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	693, 764
EarI	CTCTTC	2 cut(s)	693, 764
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	2 cut(s)	56, 75
Eco47I	GGWCC	1 cut(s)	740
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoT38I	GRGCYC	2 cut(s)	56, 75
FaeI	CATG	4 cut(s)	113, 214, 712, 792
FaiI	YATR	8 cut(s)	111, 192, 212, 303, 509, 710, 731, 790
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 502, 534
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	4 cut(s)	109, 210, 708, 788
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	748
FokI	GGATG	5 cut(s)	377, 382, 398, 571, 650
FriOI	GRGCYC	2 cut(s)	56, 75
Fsp4HI	GCNGC	1 cut(s)	748
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	1 cut(s)	748
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	108, 122
HapII	CCGG	4 cut(s)	261, 362, 416, 615
Hin1II	CATG	4 cut(s)	113, 214, 712, 792
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	3 cut(s)	87, 623, 692
HpaII	CCGG	4 cut(s)	261, 362, 416, 615
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	13, 19, 25, 29, 73, 469
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 709
HpyF3I	CTNAG	2 cut(s)	144, 411
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	4 cut(s)	113, 214, 712, 792
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	388
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	3 cut(s)	39, 70, 653
Lsp1109I	GCAGC	1 cut(s)	759
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	577
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MhlI	GDGCHC	3 cut(s)	56, 75, 785
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	2 cut(s)	135, 735
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	701
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	4 cut(s)	261, 362, 416, 615
MspR9I	CCNGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	156, 709
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	4 cut(s)	113, 214, 712, 792
NlaIV	GGNNCC	3 cut(s)	158, 320, 613
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	87, 623
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	749
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PscI	ACATGT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	577
PspN4I	GGNNCC	3 cut(s)	158, 320, 613
PspPI	GGNCC	1 cut(s)	740
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	693
SatI	GCNGC	1 cut(s)	748
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	740
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	3 cut(s)	56, 75, 785
SfaNI	GCATC	1 cut(s)	549
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	135, 735
SsiI	CCGC	2 cut(s)	154, 712
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	3 cut(s)	75, 85, 174
TasI	AATT	2 cut(s)	135, 735
TfiI	GAWTC	2 cut(s)	87, 623
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	747
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.