AT5G40570

surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007923
Physical Location & Seq
Forward (+)
16246760 .. 16248390
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40570.1

Sequence Viewer

Length: 615 bp
ATGATGAAGGAGAAGGCGAAAGAAGGGAAGAGTCTGTTTGGGTCTCCGACGTTCGTTGATCTTGGAAACGGACGGCTCAGATGCGTCGAGACTGGTCACGAGGTTTTAGCGGGAGACGTAGAATCATACGCTCGTAACAAACGGTGTCGTTTAGGACTCATCAATCACGCTTTGTCTCTAGGAAAGCCTCCTCTCAACATGTTCTCGCAATGCCCACTTTCTCGCTCGAAACTTGTGTGCAAGCTAACTGGAGATACTGTGAACAAGAACGAGGAACATATCTGGAAACACGTGAATGGGAAAAGATTTCTTCACAAATTAGAGCAAGTGGAAAGAGGAGCTGGATCAAGCGGAAGGACTGAGGAAACACAAGTAAACAATCCAAGACACAATAAGGAAGATTCTGGTTCTGAGGAATCCGACTTTTGGATGCCTAAGTCAAGTTCTGATTCAGAGTTAGATGAAGAGACTGATGAAGAAAACTGTAAAGGTTCTCATTGTGATGACAAAGAATCTGAAGAGCTCTCAGAAAGAACAAAGAGAATGTCACTAGAGATTGGACCAAGTAGCTTTGCTTCTAGGAAGAAAAAGAGTAAGAATGATGAGTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

204

Amino Acids

22.91

Weight (kDa)

6.41

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 6 - 148 5.1e-37 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 351
AclWI GGATC 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 537
AcvI CACGTG 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 426
AflIII ACRYGT 2 cut(s) 198, 289
AluBI AGCT 4 cut(s) 244, 341, 523, 570
AluI AGCT 4 cut(s) 244, 341, 523, 570
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 5 cut(s) 48, 83, 108, 180, 461
AlwI GGATC 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
AspS9I GGNCC 1 cut(s) 560
AvaII GGWCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 525
BarI GAAGNNNNNNTAC 2 cut(s) 559, 591
BauI CACGAG 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 525
BceAI ACGGC 1 cut(s) 89
BcoDI GTCTC 5 cut(s) 48, 83, 108, 180, 461
BfaI CTAG 3 cut(s) 179, 551, 579
Bme18I GGWCC 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 560
BmsI GCATC 2 cut(s) 71, 420
BpmI CTGGAG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 97, 253
Bse3DI GCAATG 1 cut(s) 215
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 4 cut(s) 91, 351, 402, 540
BseNI ACTGG 2 cut(s) 97, 253
BseRI GAGGAG 2 cut(s) 180, 351
BsiHKAI GWGCWC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 5 cut(s) 48, 83, 108, 180, 461
BsmBI CGTCTC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 2 cut(s) 58, 344
BspACI CCGC 2 cut(s) 110, 351
BspCNI CTCAG 4 cut(s) 90, 352, 403, 539
BspPI GGATC 1 cut(s) 352
BspQI GCTCTTC 1 cut(s) 513
BspTNI GGTCTC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 215
BsrI ACTGG 2 cut(s) 97, 253
BssMI GATC 2 cut(s) 58, 344
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst4CI ACNGT 3 cut(s) 144, 259, 485
Bst6I CTCTTC 3 cut(s) 23, 459, 513
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 5 cut(s) 77, 360, 411, 435, 526
BstF5I GGATG 1 cut(s) 435
BstKTI GATC 2 cut(s) 61, 347
BstMAI GTCTC 5 cut(s) 48, 83, 108, 180, 461
BstMBI GATC 2 cut(s) 58, 344
BstNSI RCATGY 1 cut(s) 202
BtsCI GGATG 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 560
CseI GACGC 1 cut(s) 73
CviAII CATG 1 cut(s) 199
CviJI RGCY 6 cut(s) 76, 187, 244, 341, 523, 570
CviKI_1 RGCY 6 cut(s) 76, 187, 244, 341, 523, 570
DdeI CTNAG 5 cut(s) 77, 360, 411, 435, 526
DpnI GATC 2 cut(s) 60, 346
DpnII GATC 2 cut(s) 58, 344
Eam1104I CTCTTC 3 cut(s) 23, 459, 513
EarI CTCTTC 3 cut(s) 23, 459, 513
Ecl136II GAGCTC 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 560
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 537
Eco72I CACGTG 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 525
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 1 cut(s) 202
FaiI YATR 3 cut(s) 127, 200, 279
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 103
FokI GGATG 1 cut(s) 442
FriOI GRGCYC 1 cut(s) 525
FspBI CTAG 3 cut(s) 179, 551, 579
GsuI CTGGAG 1 cut(s) 270
HgaI GACGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 202
HinfI GANTC 7 cut(s) 31, 122, 156, 401, 416, 449, 512
Hpy166II GTNNAC 2 cut(s) 262, 376
Hpy188I TCNGA 8 cut(s) 48, 80, 412, 421, 448, 454, 517, 529
Hpy188III TCNNGA 3 cut(s) 88, 98, 283
Hpy8I GTNNAC 2 cut(s) 262, 376
Hpy99I CGWCG 2 cut(s) 52, 89
HpyAV CCTTC 3 cut(s) 7, 17, 348
HpyCH4III ACNGT 3 cut(s) 144, 259, 485
HpyCH4IV ACGT 3 cut(s) 50, 117, 291
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 5 cut(s) 77, 360, 411, 435, 526
HpySE526I ACGT 3 cut(s) 50, 117, 291
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 58, 344
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 5 cut(s) 78, 234, 268, 327, 390
LweI GCATC 2 cut(s) 71, 420
MaeI CTAG 3 cut(s) 179, 551, 579
MaeII ACGT 3 cut(s) 50, 117, 291
MaeIII GTNAC 3 cut(s) 95, 134, 546
MalI GATC 2 cut(s) 60, 346
MboI GATC 2 cut(s) 58, 344
MboII GAAGA 7 cut(s) 40, 302, 410, 476, 488, 530, 595
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 1 cut(s) 317
MlyI GAGTC 2 cut(s) 40, 150
MmeI TCCRAC 2 cut(s) 71, 444
MnlI CCTC 7 cut(s) 94, 198, 201, 265, 329, 355, 406
MseI TTAA 1 cut(s) 613
MslI CAYNNNNRTG 2 cut(s) 294, 501
NdeII GATC 2 cut(s) 58, 344
NlaIII CATG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 95, 546
NspI RCATGY 1 cut(s) 202
PciI ACATGT 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 513
PfeI GAWTC 5 cut(s) 122, 401, 416, 449, 512
PleI GAGTC 2 cut(s) 39, 150
PmaCI CACGTG 1 cut(s) 292
PmlI CACGTG 1 cut(s) 292
PpsI GAGTC 2 cut(s) 39, 150
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 525
PspCI CACGTG 1 cut(s) 292
PspPI GGNCC 1 cut(s) 560
RseI CAYNNNNRTG 2 cut(s) 294, 501
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 1 cut(s) 613
Sau3AI GATC 2 cut(s) 58, 344
Sau96I GGNCC 1 cut(s) 560
SchI GAGTC 2 cut(s) 40, 150
SduI GDGCHC 1 cut(s) 525
SetI ASST 9 cut(s) 53, 105, 120, 246, 294, 343, 493, 525, 572
SfaNI GCATC 2 cut(s) 71, 420
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 294, 501
Sse9I AATT 1 cut(s) 317
SsiI CCGC 2 cut(s) 110, 351
SspMI CTAG 3 cut(s) 179, 551, 579
SstI GAGCTC 1 cut(s) 525
TaaI ACNGT 3 cut(s) 144, 259, 485
TaiI ACGT 3 cut(s) 53, 120, 294
TaqI TCGA 2 cut(s) 87, 227
TasI AATT 1 cut(s) 317
TfiI GAWTC 5 cut(s) 122, 401, 416, 449, 512
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TseFI GTSAC 2 cut(s) 95, 546
Tsp45I GTSAC 2 cut(s) 95, 546
TspDTI ATGAA 3 cut(s) 20, 477, 489
TspGWI ACGGA 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 560
XceI RCATGY 1 cut(s) 202
XspI CTAG 3 cut(s) 179, 551, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.