Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

4726641 .. 4728746

Gene Structure 2106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCCGTCTGTAACTGCTTCCTCCAAGCTCCACCACTCTCTCGCATACTCCTACCGGTTTTATCTCGCCGAGCTACTACTCTCTCTGCCGGTTATGGTCGGCTCAAATCCACGGTCACGTTCTGCTCTACTGTGAACCGGACCAGTCCTCTGACATCTTCGGTCCGCGCAGAAGTAAAGCGCGTCTCGCGTAAAGACGATAAAGTAGCTTCAGCTACTGATGTTCAATTTGAGACGCCTTTGAAGATTGTTGAGTATCCGGATCCTATACTACGGGCTAAGAACAAGAGGATTGATATTTTTGACGAGAATTTAAAGAACTTGGTTGATGCTATGTTTGATGTTATGTACAAAACGGATGGCATTGGGCTCTCAGCACCACAAGTAGGTCTCAATGTTCAACTCATGGTGTTTAATCCAGCTGGAGAGCCTGGAGAAGGAAAAGAAATTGTCCTTGTAAATCCGAAAATCAAGAAATATTCCGATAAATTAGTACCGTTTGATGAAGGATGCCTCTCCTTCCCGGGGATCTATGCTGAAGTTGTTCGACCACAATCTGTCAAGATTGATGCAAGGGATATTACTGGTGAAAGATTTTCAATCAGTCTATCACGTTTACCTGCACGAATCTTTCAGCACGAATACGACCATCTGGAGGGAGTTCTCTTCTTTGACAGAATGACGGATCAAGTTCTTGATAGCATTCGTGAAGAGCTAGAGGCCCTAGAAAAGAAGTACGAAGAAAAAACTGGATTGCCAAGCCCTGAAAGAGTAGAAGCACGACAAAAAAGGAAAGCAGGAGTTGGTTTTGGCAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

273

Amino Acids

30.61

Weight (kDa)

8.92

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	81 - 230	1.5e-50	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccII	CGCG	3 cut(s)	168, 183, 190
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	1 cut(s)	166
AclI	AACGTT	1 cut(s)	817
AclWI	GGATC	4 cut(s)	257, 270, 536, 693
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	195, 558
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	3 cut(s)	350, 495, 737
AfiI	CCNNNNNNNGG	4 cut(s)	386, 437, 525, 655
AgeI	ACCGGT	1 cut(s)	55
AgsI	TTSAA	4 cut(s)	227, 244, 401, 600
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	6 cut(s)	29, 74, 209, 215, 422, 715
AluI	AGCT	6 cut(s)	29, 74, 209, 215, 422, 715
Alw26I	GTCTC	3 cut(s)	190, 227, 395
AlwI	GGATC	4 cut(s)	257, 270, 536, 693
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	2 cut(s)	3, 720
ApoI	RAATTY	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AsiGI	ACCGGT	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	170, 183
AspS9I	GGNCC	3 cut(s)	141, 163, 721
AsuC2I	CCSGG	2 cut(s)	524, 525
AsuHPI	GGTGA	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	141, 163
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	372
BccI	CCATC	2 cut(s)	353, 657
BciT130I	CCWGG	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	267
BcnI	CCSGG	2 cut(s)	524, 525
BcoDI	GTCTC	3 cut(s)	190, 227, 395
BfaI	CTAG	2 cut(s)	716, 725
BfuAI	ACCTGC	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	267
Bme1390I	CCNGG	3 cut(s)	432, 524, 525
Bme18I	GGWCC	2 cut(s)	141, 163
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	141, 163, 721
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	3 cut(s)	432, 524, 525
BmsI	GCATC	3 cut(s)	319, 500, 559
BpmI	CTGGAG	3 cut(s)	444, 453, 674
BpuMI	CCSGG	2 cut(s)	524, 525
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	111, 523, 524
BsaWI	WCCGGW	3 cut(s)	55, 138, 259
Bsc4I	CCNNNNNNNGG	4 cut(s)	386, 437, 525, 655
Bse118I	RCCGGY	2 cut(s)	55, 89
Bse1I	ACTGG	3 cut(s)	144, 589, 754
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	111, 523, 524
BseGI	GGATG	2 cut(s)	364, 515
BseLI	CCNNNNNNNGG	4 cut(s)	386, 437, 525, 655
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	3 cut(s)	144, 589, 754
BsgI	GTGCAG	1 cut(s)	606
Bsh1236I	CGCG	3 cut(s)	168, 183, 190
BshFI	GGCC	2 cut(s)	5, 722
BshTI	ACCGGT	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	5 cut(s)	56, 90, 139, 260, 524
BslI	CCNNNNNNNGG	4 cut(s)	386, 437, 525, 655
BsmAI	GTCTC	3 cut(s)	190, 227, 395
BsmBI	CGTCTC	2 cut(s)	190, 227
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	2 cut(s)	5, 722
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp13I	TCCGGA	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	262, 528, 685
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	2 cut(s)	5, 722
BspCNI	CTCAG	1 cut(s)	386
BspEI	TCCGGA	1 cut(s)	259
BspFNI	CGCG	3 cut(s)	168, 183, 190
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	4 cut(s)	257, 270, 536, 693
BspQI	GCTCTTC	1 cut(s)	705
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	2 cut(s)	55, 89
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	3 cut(s)	144, 589, 754
BssAI	RCCGGY	2 cut(s)	55, 89
BssECI	CCNNGG	3 cut(s)	111, 523, 524
BssMI	GATC	3 cut(s)	262, 528, 685
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	115, 133, 498
Bst6I	CTCTTC	2 cut(s)	671, 705
BstACI	GRCGYC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	279, 373
BstDSI	CCRYGG	1 cut(s)	111
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	364, 515
BstFNI	CGCG	3 cut(s)	168, 183, 190
BstHHI	GCGC	2 cut(s)	170, 183
BstKTI	GATC	3 cut(s)	265, 531, 688
BstMAI	GTCTC	3 cut(s)	190, 227, 395
BstMBI	GATC	3 cut(s)	262, 528, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	3 cut(s)	430, 522, 523
BstUI	CGCG	3 cut(s)	168, 183, 190
BstX2I	RGATCY	2 cut(s)	262, 528
BstYI	RGATCY	2 cut(s)	262, 528
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	5, 722
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	364, 515
BveI	ACCTGC	1 cut(s)	628
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	2 cut(s)	170, 183
Cfr10I	RCCGGY	2 cut(s)	55, 89
Cfr13I	GGNCC	3 cut(s)	141, 163, 721
Cfr9I	CCCGGG	1 cut(s)	523
CpoI	CGGWCCG	1 cut(s)	163
CseI	GACGC	2 cut(s)	172, 244
Csp6I	GTAC	3 cut(s)	349, 494, 736
CspAI	ACCGGT	1 cut(s)	55
CspI	CGGWCCG	1 cut(s)	163
CviAII	CATG	1 cut(s)	406
CviQI	GTAC	3 cut(s)	349, 494, 736
DdeI	CTNAG	2 cut(s)	279, 373
DpnI	GATC	3 cut(s)	264, 530, 687
DpnII	GATC	3 cut(s)	262, 528, 685
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	671, 705
EarI	CTCTTC	2 cut(s)	671, 705
Eco24I	GRGCYC	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	141, 163
Eco57I	CTGAAG	2 cut(s)	195, 558
Eco88I	CYCGRG	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	372
Esp3I	CGTCTC	2 cut(s)	190, 227
FaeI	CATG	1 cut(s)	409
FaiI	YATR	7 cut(s)	47, 96, 269, 335, 347, 407, 534
FatI	CATG	1 cut(s)	405
FokI	GGATG	2 cut(s)	371, 522
FriOI	GRGCYC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	716, 725
GlaI	GCGC	2 cut(s)	169, 182
GsuI	CTGGAG	3 cut(s)	444, 453, 674
HaeIII	GGCC	2 cut(s)	5, 722
HapII	CCGG	5 cut(s)	56, 90, 139, 260, 524
HgaI	GACGC	2 cut(s)	172, 244
HhaI	GCGC	2 cut(s)	170, 183
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	2 cut(s)	168, 181
HinP1I	GCGC	2 cut(s)	168, 181
HinfI	GANTC	1 cut(s)	627
HpaII	CCGG	5 cut(s)	56, 90, 139, 260, 524
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	2 cut(s)	136, 617
Hpy188I	TCNGA	3 cut(s)	153, 465, 484
Hpy188III	TCNNGA	6 cut(s)	260, 472, 562, 653, 695, 707
Hpy8I	GTNNAC	2 cut(s)	136, 617
HpyAV	CCTTC	3 cut(s)	431, 500, 529
HpyCH4III	ACNGT	3 cut(s)	115, 133, 498
HpyCH4IV	ACGT	3 cut(s)	119, 613, 817
HpyCH4V	TGCA	2 cut(s)	572, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	279, 373
HpySE526I	ACGT	3 cut(s)	119, 613, 817
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	2 cut(s)	168, 181
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	262, 528, 685
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	1 cut(s)	34
LweI	GCATC	3 cut(s)	319, 500, 559
MaeI	CTAG	2 cut(s)	716, 725
MaeII	ACGT	3 cut(s)	119, 613, 817
MaeIII	GTNAC	2 cut(s)	11, 115
MalI	GATC	3 cut(s)	264, 530, 687
MboI	GATC	3 cut(s)	262, 528, 685
MboII	GAAGA	5 cut(s)	150, 256, 658, 722, 752
MflI	RGATCY	2 cut(s)	262, 528
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	4 cut(s)	227, 310, 447, 488
MnlI	CCTC	6 cut(s)	32, 159, 282, 524, 649, 712
MroI	TCCGGA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	2 cut(s)	314, 414
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	5 cut(s)	56, 90, 139, 260, 524
MspR9I	CCNGG	3 cut(s)	432, 524, 525
Mva1269I	GAATGC	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	3 cut(s)	168, 183, 190
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	2 cut(s)	524, 525
NdeII	GATC	3 cut(s)	262, 528, 685
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	627
PinAI	ACCGGT	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	817
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	141, 163, 721
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	262, 528
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	3 cut(s)	350, 495, 737
RsaNI	GTAC	3 cut(s)	349, 494, 736
Rsr2I	CGGWCCG	1 cut(s)	163
RsrII	CGGWCCG	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	2 cut(s)	314, 414
Sau3AI	GATC	3 cut(s)	262, 528, 685
Sau96I	GGNCC	3 cut(s)	141, 163, 721
ScrFI	CCNGG	3 cut(s)	432, 524, 525
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	3 cut(s)	319, 500, 559
SinI	GGWCC	2 cut(s)	141, 163
SmaI	CCCGGG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	227, 310, 447, 488
SsiI	CCGC	1 cut(s)	166
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	2 cut(s)	716, 725
StyD4I	CCNGG	3 cut(s)	430, 522, 523
TaaI	ACNGT	3 cut(s)	115, 133, 498
TaiI	ACGT	3 cut(s)	122, 616, 820
TaqI	TCGA	1 cut(s)	547
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	4 cut(s)	227, 310, 447, 488
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	2 cut(s)	314, 414
Tru9I	TTAA	2 cut(s)	314, 414
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	2 cut(s)	371, 698
TspMI	CCCGGG	1 cut(s)	523
VpaK11BI	GGWCC	2 cut(s)	141, 163
XagI	CCTNNNNNAGG	1 cut(s)	435
XapI	RAATTY	1 cut(s)	310
XmaI	CCCGGG	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	2 cut(s)	716, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.