Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

2340232 .. 2342824

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1032100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTTGTGCTGCTTCGCTCCACCCACTGTCTTCTTCCTCCCGTGCTCTCTTTCCAACTCTCTGCCGCCGGTCGACCTTTCCCGCCATCTTCCACCGGCTCAGGGGTTTCTCCTCAACCAGCCCCCTAGTATCCACCGTGAACCGGCTGATTCCGGTCCCCACACAGGCCAGGACAGGCTTCTCAGTCAAAGAAGATGATGTGGCCTCCGCTGCTGATGTGGAATTTCAAACCCCTCTGAGAATTGTGGAGTATCCGGACCCGATTCTGAGAGCGAAGAACAAGCGAATCGATTCTTTCGACGATCATTTGAAGAATTTGGTAGATGAAATGTTTGATGTAATGTACAAGAGTGATGGGATAGGGCTCTCGGCGCCCCAAGTAGGGATCAATGCGCAGCTCATGGTGTTTACTCCGGTTGTTGAGTGTGGCGAAGGGGAGGAAATTGTGCTTGTGAATCCAAGGGTTACCAGATATTCCCAGAAAAAGCGACCCTTTAACGAGGGTTGCTTATCCTTCCCGGGAATTTATGCTGATGTTGTGAGACCAGAAACTGTGAAAATAGATGCACAGGATATTAAAGGTGCGAGGTTTACAGTCAGCTTGTCAGGTCTTCCAGCACGGGTGTTCCAGCATGAATTTGATCATTTGCAGGGCGTTCTCTTCTTCGATAGAATGAGTGACGGAGTTCTTGAAACCATTTGTGCACAGCTACAGGCCTTAGAAAAGAAGTACGAGGATAGGACAGGACTCCCGAGTCCTGAAAGGGTCGAAACCCGCAGAAGGATGAAGGATGCTACTGGCTTCGGAAAATCGCAGTTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

276

Amino Acids

30.65

Weight (kDa)

7.66

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	80 - 228	1.8e-50	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	756
Acc16I	TGCGCA	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	4 cut(s)	67, 84, 210, 778
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	4 cut(s)	224, 316, 525, 638
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	2 cut(s)	347, 734
AfiI	CCNNNNNNNGG	6 cut(s)	103, 144, 166, 383, 384, 783
AgsI	TTSAA	3 cut(s)	230, 313, 695
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	3 cut(s)	400, 603, 712
AluI	AGCT	3 cut(s)	400, 603, 712
Alw21I	GWGCWC	2 cut(s)	49, 709
Alw26I	GTCTC	1 cut(s)	538
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	2 cut(s)	520, 754
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	3 cut(s)	168, 204, 717
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	3 cut(s)	11, 212, 397
ApoI	RAATTY	4 cut(s)	224, 316, 525, 638
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	376, 397
AspS9I	GGNCC	2 cut(s)	157, 259
AsuC2I	CCSGG	2 cut(s)	521, 522
AvaI	CYCGRG	2 cut(s)	520, 754
AvaII	GGWCC	2 cut(s)	157, 259
BaeGI	GKGCMC	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	24, 605
Bbv12I	GWGCWC	2 cut(s)	49, 709
BbvI	GCAGC	2 cut(s)	199, 409
BccI	CCATC	2 cut(s)	95, 350
BciT130I	CCWGG	1 cut(s)	172
BciVI	GTATCC	2 cut(s)	142, 264
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	521, 522
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	713
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	2 cut(s)	142, 264
BisI	GCNGC	4 cut(s)	12, 67, 213, 398
BlsI	GCNGC	4 cut(s)	13, 68, 214, 399
Bme1390I	CCNGG	3 cut(s)	172, 521, 522
Bme18I	GGWCC	2 cut(s)	157, 259
BmeT110I	CYCGRG	2 cut(s)	520, 754
BmgT120I	GGNCC	2 cut(s)	157, 259
BmiI	GGNNCC	3 cut(s)	159, 261, 375
BmrFI	CCNGG	3 cut(s)	172, 521, 522
BmsI	GCATC	2 cut(s)	556, 784
BpiI	GAAGAC	2 cut(s)	24, 605
Bpu10I	CCTNAGC	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	521, 522
Bsa29I	ATCGAT	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	461, 520
BsaWI	WCCGGW	3 cut(s)	154, 256, 415
Bsc4I	CCNNNNNNNGG	6 cut(s)	103, 144, 166, 383, 384, 783
Bse118I	RCCGGY	3 cut(s)	69, 96, 144
Bse1I	ACTGG	1 cut(s)	805
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	461, 520
BseGI	GGATG	2 cut(s)	792, 799
BseLI	CCNNNNNNNGG	6 cut(s)	103, 144, 166, 383, 384, 783
BseMII	CTCAG	4 cut(s)	115, 198, 230, 260
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	199, 409
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	170, 206, 719
BshNI	GGYRCC	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	49, 709
BsiHKCI	CYCGRG	2 cut(s)	520, 754
BsiSI	CCGG	7 cut(s)	70, 97, 145, 155, 257, 416, 521
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	6 cut(s)	103, 144, 166, 383, 384, 783
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	170, 206, 719
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	2 cut(s)	520, 754
Bsp1286I	GDGCHC	3 cut(s)	49, 369, 709
Bsp13I	TCCGGA	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	304, 387, 643
BspACI	CCGC	4 cut(s)	67, 84, 210, 778
BspANI	GGCC	3 cut(s)	170, 206, 719
BspCNI	CTCAG	4 cut(s)	114, 197, 231, 261
BspDI	ATCGAT	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	159, 261, 375
BspPI	GGATC	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	538
BsrFI	RCCGGY	3 cut(s)	69, 96, 144
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	805
BssAI	RCCGGY	3 cut(s)	69, 96, 144
BssECI	CCNNGG	2 cut(s)	461, 520
BssMI	GATC	3 cut(s)	304, 387, 643
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	4 cut(s)	30, 139, 556, 598
Bst6I	CTCTTC	1 cut(s)	668
BstACI	GRCGYC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	345
BstDEI	CTNAG	5 cut(s)	101, 184, 239, 269, 721
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	792, 799
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	2 cut(s)	376, 397
BstKTI	GATC	3 cut(s)	307, 390, 646
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	3 cut(s)	304, 387, 643
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 212, 373
BstNI	CCWGG	1 cut(s)	172
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	3 cut(s)	170, 519, 520
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	2 cut(s)	199, 409
BstV2I	GAAGAC	2 cut(s)	24, 605
Bsu15I	ATCGAT	1 cut(s)	291
BsuI	GTATCC	2 cut(s)	142, 264
BsuRI	GGCC	3 cut(s)	170, 206, 719
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	792, 799
BtsIMutI	CAGTG	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	376, 397
Cfr10I	RCCGGY	3 cut(s)	69, 96, 144
Cfr13I	GGNCC	2 cut(s)	157, 259
Cfr9I	CCCGGG	1 cut(s)	520
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	346, 733
CviAII	CATG	2 cut(s)	403, 635
CviQI	GTAC	2 cut(s)	346, 733
DdeI	CTNAG	5 cut(s)	101, 184, 239, 269, 721
DinI	GGCGCC	1 cut(s)	375
DpnI	GATC	3 cut(s)	306, 389, 645
DpnII	GATC	3 cut(s)	304, 387, 643
DrdI	GACNNNNNNGTC	1 cut(s)	756
DseDI	GACNNNNNNGTC	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	461
Eco147I	AGGCCT	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	157, 259
Eco88I	CYCGRG	2 cut(s)	520, 754
Eco91I	GGTNACC	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	375
EheI	GGCGCC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	2 cut(s)	406, 638
FaiI	YATR	4 cut(s)	404, 531, 636, 826
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	402, 634
FauI	CCCGC	2 cut(s)	91, 785
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	4 cut(s)	12, 67, 213, 398
FokI	GGATG	2 cut(s)	799, 806
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	4 cut(s)	12, 67, 213, 398
FspBI	CTAG	1 cut(s)	128
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	2 cut(s)	375, 396
GluI	GCNGC	4 cut(s)	12, 67, 213, 398
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	170, 206, 719
HapII	CCGG	7 cut(s)	70, 97, 145, 155, 257, 416, 521
HhaI	GCGC	2 cut(s)	376, 397
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	406, 638
Hin6I	GCGC	2 cut(s)	374, 395
HinP1I	GCGC	2 cut(s)	374, 395
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	7 cut(s)	151, 265, 288, 293, 457, 750, 757
HpaII	CCGG	7 cut(s)	70, 97, 145, 155, 257, 416, 521
Hpy166II	GTNNAC	5 cut(s)	75, 142, 411, 594, 707
Hpy188I	TCNGA	3 cut(s)	240, 270, 809
Hpy188III	TCNNGA	4 cut(s)	257, 692, 754, 761
Hpy8I	GTNNAC	5 cut(s)	75, 142, 411, 594, 707
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	4 cut(s)	428, 526, 777, 784
HpyCH4III	ACNGT	4 cut(s)	30, 139, 556, 598
HpyCH4V	TGCA	3 cut(s)	569, 652, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 212, 373
HpyF3I	CTNAG	5 cut(s)	101, 184, 239, 269, 721
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	406, 638
HspAI	GCGC	2 cut(s)	374, 395
KasI	GGCGCC	1 cut(s)	373
Kpn2I	TCCGGA	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	304, 387, 643
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	2 cut(s)	199, 409
LweI	GCATC	2 cut(s)	556, 784
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	466, 680
MalI	GATC	3 cut(s)	306, 389, 645
MboI	GATC	3 cut(s)	304, 387, 643
MboII	GAAGA	9 cut(s)	24, 27, 82, 206, 289, 325, 605, 655, 658
MhlI	GDGCHC	3 cut(s)	49, 369, 709
MluCI	AATT	6 cut(s)	224, 243, 316, 444, 525, 638
Mly113I	GGCGCC	1 cut(s)	374
MlyI	GAGTC	2 cut(s)	744, 766
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	49, 124, 217, 246, 433, 496, 582, 730
MroI	TCCGGA	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	2 cut(s)	498, 579
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	7 cut(s)	70, 97, 145, 155, 257, 416, 521
MspR9I	CCNGG	3 cut(s)	172, 521, 522
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	11, 212, 373
NarI	GGCGCC	1 cut(s)	374
NciI	CCSGG	2 cut(s)	521, 522
NdeII	GATC	3 cut(s)	304, 387, 643
NlaIII	CATG	2 cut(s)	406, 638
NlaIV	GGNNCC	3 cut(s)	159, 261, 375
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	680
NsbI	TGCGCA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	5 cut(s)	151, 265, 288, 293, 457
PkrI	GCNGC	4 cut(s)	13, 68, 214, 399
PleI	GAGTC	2 cut(s)	744, 765
PluTI	GGCGCC	1 cut(s)	377
PpsI	GAGTC	2 cut(s)	744, 765
Psp6I	CCWGG	1 cut(s)	170
PspEI	GGTNACC	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	159, 261, 375
PspPI	GGNCC	2 cut(s)	157, 259
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	347, 734
RsaNI	GTAC	2 cut(s)	346, 733
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	498, 579
SatI	GCNGC	4 cut(s)	12, 67, 213, 398
Sau3AI	GATC	3 cut(s)	304, 387, 643
Sau96I	GGNCC	2 cut(s)	157, 259
SchI	GAGTC	2 cut(s)	744, 766
ScrFI	CCNGG	3 cut(s)	172, 521, 522
SduI	GDGCHC	3 cut(s)	49, 369, 709
SetI	ASST	7 cut(s)	80, 402, 586, 593, 605, 613, 714
SfaNI	GCATC	2 cut(s)	556, 784
SfcI	CTRYAG	1 cut(s)	713
SfoI	GGCGCC	1 cut(s)	375
SinI	GGWCC	2 cut(s)	157, 259
SmaI	CCCGGG	1 cut(s)	522
Sse9I	AATT	6 cut(s)	224, 243, 316, 444, 525, 638
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	4 cut(s)	67, 84, 210, 778
SspDI	GGCGCC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	3 cut(s)	170, 519, 520
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	4 cut(s)	30, 139, 556, 598
TaqI	TCGA	5 cut(s)	74, 291, 300, 669, 771
TasI	AATT	6 cut(s)	224, 243, 316, 444, 525, 638
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	5 cut(s)	151, 265, 288, 293, 457
Tru1I	TTAA	2 cut(s)	498, 579
Tru9I	TTAA	2 cut(s)	498, 579
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	3 cut(s)	11, 212, 397
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	3 cut(s)	342, 651, 803
TspGWI	ACGGA	1 cut(s)	699
TspMI	CCCGGG	1 cut(s)	520
TspRI	CASTG	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	2 cut(s)	157, 259
XapI	RAATTY	4 cut(s)	224, 316, 525, 638
XmaI	CCCGGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.