Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

64221746 .. 64222220

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG392200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGGGAGACGATGCGGTGGCTCAAGGCAGAGACCTTGGTGATTCAAGCTTTGGATTGGAAGACCGAAATGATGTTTTGGGTAATTTTGGGTTCTGAGAACAGTGAGAGAGAGAGAGAGAGAGAGTCTGTGAAGCGAGGAGTGGAGGAGACGCAGCTTGAAGAAGAAGAACAAGAGGAGGGGAAAAGCTTAGGGTTCGACAAAGATCGGGAAGAAGAGATGGCCAAACGAGGCTCTGCACTCAAAGAAGACGAAGTAGCTTCTGCTGCTGATGTTGAATTTGAGACGCCTCTGAAAATTGTGGAGTATTCGGACCCTATTCTGAGAGCAAAGAATAAGAGAATTGAATCGTTTGATGAAAATTTGAAGAAATTAGTGGAAGAAACGTTTGATATAATGTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

135

Amino Acids

15.98

Weight (kDa)

4.62

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AclI	AACGTT	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	278, 361
AcyI	GRCGYC	1 cut(s)	287
AfaI	GTAC	1 cut(s)	401
AgsI	TTSAA	5 cut(s)	47, 161, 278, 347, 367
AluBI	AGCT	4 cut(s)	50, 157, 189, 260
AluI	AGCT	4 cut(s)	50, 157, 189, 260
Alw26I	GTCTC	4 cut(s)	2, 26, 143, 278
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	154, 266
ApoI	RAATTY	2 cut(s)	278, 361
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	68, 255
BbvI	GCAGC	2 cut(s)	166, 253
BccI	CCATC	1 cut(s)	214
BcoDI	GTCTC	4 cut(s)	2, 26, 143, 278
BisI	GCNGC	2 cut(s)	155, 267
BlsI	GCNGC	2 cut(s)	156, 268
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	3
BpiI	GAAGAC	2 cut(s)	68, 255
Bpu10I	CCTNAGC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	87, 314
BseRI	GAGGAG	3 cut(s)	153, 161, 191
BseXI	GCAGC	2 cut(s)	166, 253
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	224
BsmAI	GTCTC	4 cut(s)	2, 26, 143, 278
BsmBI	CGTCTC	3 cut(s)	2, 143, 278
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	88, 315
BspLI	GGNNCC	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	96, 190, 323
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	4 cut(s)	2, 26, 143, 278
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	166, 253
BstV2I	GAAGAC	2 cut(s)	68, 255
BsuRI	GGCC	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	2 cut(s)	160, 295
Csp6I	GTAC	1 cut(s)	400
CviJI	RGCY	7 cut(s)	22, 50, 157, 189, 224, 234, 260
CviKI_1	RGCY	7 cut(s)	22, 50, 157, 189, 224, 234, 260
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	3 cut(s)	96, 190, 323
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	3 cut(s)	2, 143, 278
FaiI	YATR	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	155, 267
Fsp4HI	GCNGC	2 cut(s)	155, 267
GluI	GCNGC	2 cut(s)	155, 267
HaeIII	GGCC	1 cut(s)	224
HgaI	GACGC	2 cut(s)	160, 295
Hin1I	GRCGYC	1 cut(s)	287
HindIII	AAGCTT	2 cut(s)	48, 187
HinfI	GANTC	3 cut(s)	43, 125, 347
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	97, 294, 313, 324
Hpy188III	TCNNGA	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	96, 190, 323
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	205
Lsp1109I	GCAGC	2 cut(s)	166, 253
LweI	GCATC	1 cut(s)	3
MaeII	ACGT	1 cut(s)	386
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	9 cut(s)	73, 173, 176, 179, 224, 227, 260, 379, 392
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	6 cut(s)	84, 278, 297, 342, 361, 371
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	131, 139, 169, 172, 224, 300
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	43, 347
PkrI	GCNGC	2 cut(s)	156, 268
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	313
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SatI	GCNGC	2 cut(s)	155, 267
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	134
SetI	ASST	6 cut(s)	38, 52, 159, 191, 262, 389
SfaNI	GCATC	1 cut(s)	3
SgeI	CNNG	8 cut(s)	37, 49, 59, 149, 170, 185, 221, 242
SinI	GGWCC	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	6 cut(s)	84, 278, 297, 342, 361, 371
SsiI	CCGC	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	6 cut(s)	84, 278, 297, 342, 361, 371
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	43, 347
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	2 cut(s)	154, 266
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	2 cut(s)	278, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.