Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004498.1

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

2487 .. 2802

Gene Structure 316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004498.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgcagcttgaagaagaagaagaagaagaagaggggaaaagcttagggttcggcaaagatcaggaaaaagagatggccaaacaaggctcctcactcaaagaagatgacgtagcttctgctgctgatgttgaatttgagaagcctctgaaaattgtggagtatccagaccctattctgagagcaaagaaaaagagaattgaatcgtttgatgaaaatttgaagaaattatggaggaaatgtttgacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

82

Amino Acids

9.52

Weight (kDa)

4.79

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	131, 214
AgsI	TTSAA	4 cut(s)	11, 131, 200, 220
AluBI	AGCT	3 cut(s)	7, 42, 113
AluI	AGCT	3 cut(s)	7, 42, 113
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	4, 119
ApoI	RAATTY	2 cut(s)	131, 214
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	16, 106
BccI	CCATC	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	5, 120
BlsI	GCNGC	2 cut(s)	6, 121
BmiI	GGNNCC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	43
BsaXI	ACNNNNNCTCC	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	16, 106
BshFI	GGCC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	88
BssMI	GATC	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	43, 176
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	16, 106
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	77
CviJI	RGCY	6 cut(s)	7, 42, 77, 87, 113, 142
CviKI_1	RGCY	6 cut(s)	7, 42, 77, 87, 113, 142
DdeI	CTNAG	2 cut(s)	43, 176
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
FaiI	YATR	2 cut(s)	229, 247
Fnu4HI	GCNGC	2 cut(s)	5, 120
Fsp4HI	GCNGC	2 cut(s)	5, 120
GluI	GCNGC	2 cut(s)	5, 120
HaeIII	GGCC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	147, 177
Hpy188III	TCNNGA	2 cut(s)	62, 164
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	43, 176
HpySE526I	ACGT	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	47, 177
Lsp1109I	GCAGC	2 cut(s)	16, 106
MaeII	ACGT	1 cut(s)	108
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	9 cut(s)	23, 26, 29, 32, 35, 38, 41, 113, 232
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	5 cut(s)	131, 150, 195, 214, 224
MluNI	TGGCCA	1 cut(s)	77
MnlI	CCTC	4 cut(s)	25, 100, 153, 225
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	6, 121
PspN4I	GGNNCC	1 cut(s)	88
SatI	GCNGC	2 cut(s)	5, 120
Sau3AI	GATC	1 cut(s)	58
SetI	ASST	4 cut(s)	9, 44, 111, 115
SgeI	CNNG	4 cut(s)	20, 74, 95, 176
Sse9I	AATT	5 cut(s)	131, 150, 195, 214, 224
TaiI	ACGT	1 cut(s)	111
TasI	AATT	5 cut(s)	131, 150, 195, 214, 224
TfiI	GAWTC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	4, 119
TspDTI	ATGAA	1 cut(s)	225
XapI	RAATTY	2 cut(s)	131, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.