Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000467.1

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

38027 .. 40285

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000467.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggcttgtgcggcttggctccagccaatttcctcaccccacgctatctttccatctctctgccgccgcccaatttttcccgccatcttccaccgcttcaccaccttctcctccgccggccagccactatccgccgccaaccgcttcactccggtccacgcgcaggccaaacgaggctcctcactcaaagaagacgaagtagcttctgccgcggatgttgaatttgaggcgccgctgaaaattgtggagtatccggaccctatactgagagcaaagaacaagagaattgaatcgtttgatgaaaatttgaagaaattagtggaggaaatgtttgatataatgtacaaaactgatggcattgggctctcggccccgcaagttggaatcaatgtgcagctgatggtgttcaatccggttggggagcgcggcgaaggggaggagattgtgcttgtgaatccaagagttagcagatattcgcagagaacgaggctctttgaagagggttgcttgtccttcccggggatttatgctgatgttcagagaccagaaactgtgaaaatagacgcacgggacgtcagtggtgcgaggtttacagtcaacttgtccggtcttcctgcacgggtgttccagcatgaatttgaccatttgcagggtattcttttctttgatagaatgactgaaggagttcttgaaagcatctctgaacagctacaggcattagagaagaagtatgaagataaaacaggacttccaagtcctgaaaggatagaaagccgtaaaaggatgaagttgaaggctgctgctggttttgggaaatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

273

Amino Acids

30.56

Weight (kDa)

6.98

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	753
AatII	GACGTC	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	3 cut(s)	161, 212, 426
AccIII	TCCGGA	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	3 cut(s)	221, 304, 635
AcuI	CTGAAG	1 cut(s)	699
AcyI	GRCGYC	2 cut(s)	230, 573
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	4 cut(s)	163, 380, 519, 649
AgsI	TTSAA	7 cut(s)	221, 290, 310, 409, 497, 692, 793
AluBI	AGCT	3 cut(s)	203, 397, 709
AluI	AGCT	3 cut(s)	203, 397, 709
Alw26I	GTCTC	1 cut(s)	535
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	517
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	3 cut(s)	118, 165, 369
ApeKI	GCWGC	3 cut(s)	394, 797, 800
ApoI	RAATTY	3 cut(s)	221, 304, 635
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	3 cut(s)	163, 232, 426
AspS9I	GGNCC	3 cut(s)	154, 256, 370
AsuC2I	CCSGG	2 cut(s)	518, 519
AsuHPI	GGTGA	2 cut(s)	27, 91
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	154, 256
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	2 cut(s)	198, 602
BbvI	GCAGC	3 cut(s)	406, 784, 787
BccI	CCATC	4 cut(s)	61, 92, 347, 394
BceAI	ACGGC	1 cut(s)	759
BciVI	GTATCC	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	518, 519
BcoDI	GTCTC	1 cut(s)	535
BfmI	CTRYAG	1 cut(s)	710
BfoI	RGCGCY	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	261
Bme1390I	CCNGG	2 cut(s)	518, 519
Bme18I	GGWCC	2 cut(s)	154, 256
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	3 cut(s)	154, 256, 370
BmiI	GGNNCC	5 cut(s)	20, 178, 231, 258, 372
BmrFI	CCNGG	2 cut(s)	518, 519
BmsI	GCATC	1 cut(s)	705
BpiI	GAAGAC	2 cut(s)	198, 602
BpmI	CTGGAG	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	518, 519
BsaHI	GRCGYC	2 cut(s)	230, 573
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	3 cut(s)	210, 517, 518
BsaWI	WCCGGW	4 cut(s)	151, 253, 412, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 380, 519, 649
Bse118I	RCCGGY	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	210, 517, 518
BseGI	GGATG	2 cut(s)	220, 789
BseLI	CCNNNNNNNGG	4 cut(s)	163, 380, 519, 649
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	100, 169, 452
BseXI	GCAGC	3 cut(s)	406, 784, 787
BsgI	GTGCAG	2 cut(s)	413, 600
Bsh1236I	CGCG	3 cut(s)	161, 212, 426
BshFI	GGCC	3 cut(s)	120, 167, 371
BshNI	GGYRCC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	6 cut(s)	117, 152, 254, 413, 518, 606
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	4 cut(s)	163, 380, 519, 649
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	3 cut(s)	120, 167, 371
Bso31I	GGTCTC	1 cut(s)	535
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp13I	TCCGGA	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	342
BspANI	GGCC	3 cut(s)	120, 167, 371
BspCNI	CTCAG	1 cut(s)	258
BspEI	TCCGGA	1 cut(s)	253
BspFNI	CGCG	3 cut(s)	161, 212, 426
BspLI	GGNNCC	5 cut(s)	20, 178, 231, 258, 372
BspT107I	GGYRCC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	210, 517, 518
BssNI	GRCGYC	2 cut(s)	230, 573
Bst4CI	ACNGT	2 cut(s)	553, 595
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	2 cut(s)	230, 573
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	118, 122, 165
BstDEI	CTNAG	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	220, 789
BstFNI	CGCG	3 cut(s)	161, 212, 426
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	3 cut(s)	163, 232, 426
BstMAI	GTCTC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 209
BstSCI	CCNGG	2 cut(s)	516, 517
BstSFI	CTRYAG	1 cut(s)	710
BstUI	CGCG	3 cut(s)	161, 212, 426
BstV1I	GCAGC	3 cut(s)	406, 784, 787
BstV2I	GAAGAC	2 cut(s)	198, 602
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	120, 167, 371
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	220, 789
BtsIMutI	CAGTG	1 cut(s)	583
Cac8I	GCNNGC	3 cut(s)	118, 122, 165
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	3 cut(s)	163, 232, 426
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	154, 256, 370
Cfr42I	CCGCGG	1 cut(s)	213
Cfr9I	CCCGGG	1 cut(s)	517
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	632
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	266
DinI	GGCGCC	1 cut(s)	231
DrdI	GACNNNNNNGTC	1 cut(s)	753
DseDI	GACNNNNNNGTC	1 cut(s)	753
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	2 cut(s)	103, 121
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	535
Eco47I	GGWCC	2 cut(s)	154, 256
Eco57I	CTGAAG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
FaeI	CATG	1 cut(s)	635
FaiI	YATR	6 cut(s)	263, 338, 528, 633, 732, 820
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	1 cut(s)	631
FauI	CCCGC	2 cut(s)	88, 381
FokI	GGATG	2 cut(s)	227, 796
FriOI	GRGCYC	1 cut(s)	366
GlaI	GCGC	3 cut(s)	162, 231, 425
GsuI	CTGGAG	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	3 cut(s)	120, 167, 371
HapII	CCGG	6 cut(s)	117, 152, 254, 413, 518, 606
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	3 cut(s)	163, 232, 426
Hin1I	GRCGYC	2 cut(s)	230, 573
Hin1II	CATG	1 cut(s)	635
Hin6I	GCGC	3 cut(s)	161, 230, 424
HinP1I	GCGC	3 cut(s)	161, 230, 424
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	290, 384, 454
HpaII	CCGG	6 cut(s)	117, 152, 254, 413, 518, 606
HphI	GGTGA	2 cut(s)	27, 91
Hpy166II	GTNNAC	3 cut(s)	157, 591, 598
Hpy188I	TCNGA	2 cut(s)	540, 703
Hpy188III	TCNNGA	3 cut(s)	254, 689, 758
Hpy8I	GTNNAC	3 cut(s)	157, 591, 598
HpyAV	CCTTC	5 cut(s)	115, 425, 523, 674, 787
HpyCH4III	ACNGT	2 cut(s)	553, 595
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	3 cut(s)	394, 617, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 209
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	2 cut(s)	230, 573
Hsp92II	CATG	1 cut(s)	635
HspAI	GCGC	3 cut(s)	161, 230, 424
KasI	GGCGCC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	253
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
KspI	CCGCGG	1 cut(s)	213
LmnI	GCTCC	3 cut(s)	24, 182, 421
Lsp1109I	GCAGC	3 cut(s)	406, 784, 787
LweI	GCATC	1 cut(s)	705
MaeII	ACGT	1 cut(s)	573
MboII	GAAGA	7 cut(s)	79, 203, 322, 509, 602, 736, 746
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	8 cut(s)	27, 72, 221, 240, 285, 304, 314, 635
Mly113I	GGCGCC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	361
MroI	TCCGGA	1 cut(s)	253
MroNI	GCCGGC	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	684
MspA1I	CMGCKG	3 cut(s)	212, 235, 397
MspI	CCGG	6 cut(s)	117, 152, 254, 413, 518, 606
MspR9I	CCNGG	2 cut(s)	518, 519
MvnI	CGCG	3 cut(s)	161, 212, 426
MwoI	GCNNNNNNNGC	2 cut(s)	11, 209
NaeI	GCCGGC	1 cut(s)	118
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	518, 519
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	635
NlaIV	GGNNCC	5 cut(s)	20, 178, 231, 258, 372
NmeAIII	GCCGAG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	2 cut(s)	482, 570
PdiI	GCCGGC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	290, 384, 454
PluTI	GGCGCC	1 cut(s)	233
PspN4I	GGNNCC	5 cut(s)	20, 178, 231, 258, 372
PspPI	GGNCC	3 cut(s)	154, 256, 370
PstNI	CAGNNNCTG	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SacII	CCGCGG	1 cut(s)	213
Sau96I	GGNCC	3 cut(s)	154, 256, 370
ScrFI	CCNGG	2 cut(s)	518, 519
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	6 cut(s)	107, 205, 399, 576, 590, 711
SfaNI	GCATC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	710
SfoI	GGCGCC	1 cut(s)	231
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	154, 256
SmaI	CCCGGG	1 cut(s)	519
Sse9I	AATT	8 cut(s)	27, 72, 221, 240, 285, 304, 314, 635
SspDI	GGCGCC	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	516, 517
TaaI	ACNGT	2 cut(s)	553, 595
TaiI	ACGT	1 cut(s)	576
TasI	AATT	8 cut(s)	27, 72, 221, 240, 285, 304, 314, 635
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	7 cut(s)	14, 66, 69, 137, 212, 235, 429
TfiI	GAWTC	3 cut(s)	290, 384, 454
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	3 cut(s)	394, 797, 800
TspDTI	ATGAA	4 cut(s)	315, 648, 747, 800
TspMI	CCCGGG	1 cut(s)	517
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	154, 256
XapI	RAATTY	3 cut(s)	221, 304, 635
XmaI	CCCGGG	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	684
ZraI	GACGTC	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.