Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

1855440 .. 1858171

Gene Structure 2732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1030300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTTGTGCTGCCTCGCTCCACCCACTGTCTTCTTCCTCCCGGGCTCTCTTTCCACCTCTCTGCCGCCAGTCGACCATTCCCGCCATCTTCCACCGGCTCAGGAATTTCTCCTCAACCAGCCGCCTAGTATCCACCATGAACCGGTTGAGCCCGGTCCGCGCCCAGGCCAAGCGAGGGTTCTCAGTCAAAGAAGACGAAGTGGCCTCCGCTGCGGATGTGGAATTTGAAATCCCTCTGAAAATTGTGGAATACCCGGACCCGATTCTGAGAGCGAAGAACAAGCGAATCGATTCTTTCGACGATAATTTGAAGAATTTGGTAGATGAAATGTTTGATGTAATGTACAAAACTGATGGAATAGGGCTCTCAGCGCCACAAGTAGGGATCAATGTGCAGCTCATGGTTTTTAATCCGGTTGGTGAGCGCGGGGAAGGGGAGGAAATTGTGCTTGTGAATCCAAGGGTTACCAGATATTCTCAGAAAACGAGACCCTTTAACGAGGGTTGCTTATCCTTCCCGGGGATTTATGCTGACGTTGTGAGACCAGAAACTGTGAAAATAGATGCACGGGACATCAAAGGTGCTAGGTTTACAGTCAGCTTGTCAGGTCTTCCAGCACGGGTGTTCCAGCATGAATTCGACCATTTGCAGGGAGTTCTCTTTTTCGATAGAATGAGTGAAGGAGTTCTTGAAACCATTTGTGCACAGCTACAGGCGTTAGAAAAGAAGTACGAGGATAGGACAGGACTCCCGAGTCCTGAAAGGGTTGAAACCCGCAGAAGGATGAAGGCTGCTACTGGTTTTGGAAAATCACAATTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

276

Amino Acids

30.78

Weight (kDa)

8.87

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	80 - 228	7.9e-52	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	74
AccII	CGCG	2 cut(s)	162, 429
AciI	CCGC	8 cut(s)	67, 84, 124, 160, 210, 215, 429, 778
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	4 cut(s)	106, 224, 316, 638
AfaI	GTAC	2 cut(s)	347, 734
AfiI	CCNNNNNNNGG	7 cut(s)	144, 166, 177, 383, 522, 652, 783
AgeI	ACCGGT	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	230, 313, 695, 773
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	400, 603, 712
AluI	AGCT	3 cut(s)	400, 603, 712
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	2 cut(s)	484, 538
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	3 cut(s)	42, 520, 754
AoxI	GGCC	2 cut(s)	168, 204
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	4 cut(s)	11, 212, 397, 794
ApoI	RAATTY	4 cut(s)	106, 224, 316, 638
AsiGI	ACCGGT	1 cut(s)	144
Asp700I	GAANNNNTTC	2 cut(s)	292, 687
AspLEI	GCGC	3 cut(s)	164, 376, 429
AspS9I	GGNCC	2 cut(s)	157, 259
AsuC2I	CCSGG	6 cut(s)	43, 44, 155, 257, 521, 522
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	3 cut(s)	42, 520, 754
AvaII	GGWCC	2 cut(s)	157, 259
BaeGI	GKGCMC	1 cut(s)	709
BanII	GRGCYC	3 cut(s)	49, 155, 369
BbsI	GAAGAC	3 cut(s)	24, 201, 605
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	3 cut(s)	199, 409, 781
BccI	CCATC	2 cut(s)	95, 350
BciT130I	CCWGG	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	142
BcnI	CCSGG	6 cut(s)	43, 44, 155, 257, 521, 522
BcoDI	GTCTC	2 cut(s)	484, 538
BfaI	CTAG	2 cut(s)	128, 588
BfmI	CTRYAG	1 cut(s)	713
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	6 cut(s)	12, 67, 124, 213, 398, 795
BlsI	GCNGC	6 cut(s)	13, 68, 125, 214, 399, 796
Bme1390I	CCNGG	7 cut(s)	43, 44, 155, 167, 257, 521, 522
Bme18I	GGWCC	2 cut(s)	157, 259
BmeT110I	CYCGRG	3 cut(s)	42, 520, 754
BmgT120I	GGNCC	2 cut(s)	157, 259
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	7 cut(s)	43, 44, 155, 167, 257, 521, 522
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	3 cut(s)	24, 201, 605
Bpu10I	CCTNAGC	1 cut(s)	101
BpuMI	CCSGG	6 cut(s)	43, 44, 155, 257, 521, 522
Bsa29I	ATCGAT	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	484, 538
BsaJI	CCNNGG	5 cut(s)	42, 165, 461, 520, 521
BsaWI	WCCGGW	2 cut(s)	144, 415
Bsc4I	CCNNNNNNNGG	7 cut(s)	144, 166, 177, 383, 522, 652, 783
Bse118I	RCCGGY	2 cut(s)	96, 144
Bse1I	ACTGG	2 cut(s)	70, 805
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	5 cut(s)	42, 165, 461, 520, 521
BseGI	GGATG	2 cut(s)	223, 792
BseLI	CCNNNNNNNGG	7 cut(s)	144, 166, 177, 383, 522, 652, 783
BseMII	CTCAG	5 cut(s)	115, 198, 260, 384, 494
BseNI	ACTGG	2 cut(s)	70, 805
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	3 cut(s)	199, 409, 781
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	2 cut(s)	162, 429
BshFI	GGCC	2 cut(s)	170, 206
BshTI	ACCGGT	1 cut(s)	144
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	709
BsiHKCI	CYCGRG	3 cut(s)	42, 520, 754
BsiSI	CCGG	7 cut(s)	43, 97, 145, 155, 257, 416, 521
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	7 cut(s)	144, 166, 177, 383, 522, 652, 783
BsmAI	GTCTC	2 cut(s)	484, 538
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	170, 206
Bso31I	GGTCTC	2 cut(s)	484, 538
BsoBI	CYCGRG	3 cut(s)	42, 520, 754
Bsp1286I	GDGCHC	4 cut(s)	49, 155, 369, 709
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	8 cut(s)	67, 84, 124, 160, 210, 215, 429, 778
BspANI	GGCC	2 cut(s)	170, 206
BspCNI	CTCAG	5 cut(s)	114, 197, 261, 383, 493
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	2 cut(s)	162, 429
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	395
BspTNI	GGTCTC	2 cut(s)	484, 538
BsrFI	RCCGGY	2 cut(s)	96, 144
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	70, 805
BssAI	RCCGGY	2 cut(s)	96, 144
BssECI	CCNNGG	5 cut(s)	42, 165, 461, 520, 521
BssMI	GATC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	30, 556, 598
BstAUI	TGTACA	1 cut(s)	345
BstDEI	CTNAG	5 cut(s)	101, 184, 269, 370, 480
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	223, 792
BstFNI	CGCG	2 cut(s)	162, 429
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	3 cut(s)	164, 376, 429
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	2 cut(s)	484, 538
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 159, 212, 373
BstNI	CCWGG	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	7 cut(s)	41, 42, 153, 165, 255, 519, 520
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	2 cut(s)	162, 429
BstV1I	GCAGC	3 cut(s)	199, 409, 781
BstV2I	GAAGAC	3 cut(s)	24, 201, 605
Bsu15I	ATCGAT	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	170, 206
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	223, 792
BtsIMutI	CAGTG	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	3 cut(s)	164, 376, 429
Cfr10I	RCCGGY	2 cut(s)	96, 144
Cfr13I	GGNCC	2 cut(s)	157, 259
Cfr9I	CCCGGG	2 cut(s)	42, 520
ClaI	ATCGAT	1 cut(s)	291
CpoI	CGGWCCG	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	346, 733
CspAI	ACCGGT	1 cut(s)	144
CspI	CGGWCCG	1 cut(s)	157
CviAII	CATG	3 cut(s)	139, 403, 635
CviQI	GTAC	2 cut(s)	346, 733
DdeI	CTNAG	5 cut(s)	101, 184, 269, 370, 480
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
DrdI	GACNNNNNNGTC	1 cut(s)	756
DseDI	GACNNNNNNGTC	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	3 cut(s)	49, 155, 369
Eco31I	GGTCTC	2 cut(s)	484, 538
Eco47I	GGWCC	2 cut(s)	157, 259
Eco88I	CYCGRG	3 cut(s)	42, 520, 754
Eco91I	GGTNACC	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	3 cut(s)	49, 155, 369
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	3 cut(s)	142, 406, 638
FaiI	YATR	5 cut(s)	140, 404, 531, 636, 826
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	3 cut(s)	138, 402, 634
FauI	CCCGC	3 cut(s)	91, 422, 785
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	6 cut(s)	12, 67, 124, 213, 398, 795
FokI	GGATG	2 cut(s)	230, 799
FriOI	GRGCYC	3 cut(s)	49, 155, 369
Fsp4HI	GCNGC	6 cut(s)	12, 67, 124, 213, 398, 795
FspBI	CTAG	2 cut(s)	128, 588
GlaI	GCGC	3 cut(s)	163, 375, 428
GluI	GCNGC	6 cut(s)	12, 67, 124, 213, 398, 795
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	170, 206
HapII	CCGG	7 cut(s)	43, 97, 145, 155, 257, 416, 521
HhaI	GCGC	3 cut(s)	164, 376, 429
Hin1II	CATG	3 cut(s)	142, 406, 638
Hin6I	GCGC	3 cut(s)	162, 374, 427
HinP1I	GCGC	3 cut(s)	162, 374, 427
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	6 cut(s)	265, 288, 293, 457, 750, 757
HpaII	CCGG	7 cut(s)	43, 97, 145, 155, 257, 416, 521
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	3 cut(s)	75, 594, 707
Hpy188I	TCNGA	3 cut(s)	240, 270, 483
Hpy188III	TCNNGA	4 cut(s)	103, 692, 754, 761
Hpy8I	GTNNAC	3 cut(s)	75, 594, 707
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	5 cut(s)	428, 526, 677, 777, 784
HpyCH4III	ACNGT	3 cut(s)	30, 556, 598
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	4 cut(s)	397, 569, 652, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 159, 212, 373
HpyF3I	CTNAG	5 cut(s)	101, 184, 269, 370, 480
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	142, 406, 638
HspAI	GCGC	3 cut(s)	162, 374, 427
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	3 cut(s)	199, 409, 781
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	2 cut(s)	128, 588
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	7 cut(s)	24, 27, 82, 206, 289, 325, 605
MhlI	GDGCHC	4 cut(s)	49, 155, 369, 709
MluCI	AATT	8 cut(s)	106, 224, 243, 307, 316, 444, 638, 818
MlyI	GAGTC	2 cut(s)	744, 766
MroXI	GAANNNNTTC	2 cut(s)	292, 687
MseI	TTAA	2 cut(s)	411, 498
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	7 cut(s)	43, 97, 145, 155, 257, 416, 521
MspR9I	CCNGG	7 cut(s)	43, 44, 155, 167, 257, 521, 522
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	2 cut(s)	162, 429
MwoI	GCNNNNNNNGC	4 cut(s)	11, 159, 212, 373
NciI	CCSGG	6 cut(s)	43, 44, 155, 257, 521, 522
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	3 cut(s)	142, 406, 638
NlaIV	GGNNCC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	2 cut(s)	292, 687
PfeI	GAWTC	4 cut(s)	265, 288, 293, 457
PinAI	ACCGGT	1 cut(s)	144
PkrI	GCNGC	6 cut(s)	13, 68, 125, 214, 399, 796
PleI	GAGTC	2 cut(s)	744, 765
PpsI	GAGTC	2 cut(s)	744, 765
Psp6I	CCWGG	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	157, 259
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	347, 734
RsaNI	GTAC	2 cut(s)	346, 733
Rsr2I	CGGWCCG	1 cut(s)	157
RsrII	CGGWCCG	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	411, 498
SatI	GCNGC	6 cut(s)	12, 67, 124, 213, 398, 795
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	2 cut(s)	157, 259
SchI	GAGTC	2 cut(s)	744, 766
ScrFI	CCNGG	7 cut(s)	43, 44, 155, 167, 257, 521, 522
SduI	GDGCHC	4 cut(s)	49, 155, 369, 709
SetI	ASST	8 cut(s)	61, 402, 540, 586, 593, 605, 613, 714
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	713
SinI	GGWCC	2 cut(s)	157, 259
SmaI	CCCGGG	2 cut(s)	44, 522
Sse9I	AATT	8 cut(s)	106, 224, 243, 307, 316, 444, 638, 818
SsiI	CCGC	8 cut(s)	67, 84, 124, 160, 210, 215, 429, 778
SspMI	CTAG	2 cut(s)	128, 588
StyD4I	CCNGG	7 cut(s)	41, 42, 153, 165, 255, 519, 520
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	3 cut(s)	30, 556, 598
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	5 cut(s)	74, 291, 300, 642, 669
TasI	AATT	8 cut(s)	106, 224, 243, 307, 316, 444, 638, 818
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	2 cut(s)	69, 126
TfiI	GAWTC	4 cut(s)	265, 288, 293, 457
Tru1I	TTAA	2 cut(s)	411, 498
Tru9I	TTAA	2 cut(s)	411, 498
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	4 cut(s)	11, 212, 397, 794
TspDTI	ATGAA	4 cut(s)	155, 342, 651, 803
TspMI	CCCGGG	2 cut(s)	42, 520
TspRI	CASTG	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	2 cut(s)	157, 259
XapI	RAATTY	4 cut(s)	106, 224, 316, 638
XmaI	CCCGGG	2 cut(s)	42, 520
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	2 cut(s)	292, 687
XspI	CTAG	2 cut(s)	128, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.