Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Forward (+)

4912268 .. 4913164

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG024900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCAGCTTGAAGAAGAAGAACAAGAGGAGGGGAAAAGCTTAGGGTTCGACAAAGATCGGGAAGAAGAGATGGCCAAACTAGGCTCTGCACTCAAAAAAGATGAAGTAGCTTCTGCTGCTGATATTGAATTTGAGACGCCTCTGAAAATTGTTGAGTATCCGGACCCTATTCTGAGAGCAAAGAATAAGAGAATTGAATCGTTTGATGAAAATTTGAAGAAATTAGTGGAAGAAACGTTTGATATAATAACTGATGGCATTGGGCAAGTTGGAACCAATGTGCAGTTGATGGTGTTCAATCCGGTTGGCGAGCTCGATGAAAGGGTTGGAGACGGAGGGGTGTTGAGATTTCTGGAGCCACACACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

123

Amino Acids

13.9

Weight (kDa)

4.39

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	160
AclI	AACGTT	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	128, 211
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	5 cut(s)	11, 128, 197, 217, 298
AluBI	AGCT	4 cut(s)	7, 39, 110, 313
AluI	AGCT	4 cut(s)	7, 39, 110, 313
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	128, 324
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	4, 116
ApoI	RAATTY	2 cut(s)	128, 211
AspS9I	GGNCC	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	16, 103
BccI	CCATC	3 cut(s)	64, 248, 283
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	128, 324
BfaI	CTAG	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	2 cut(s)	5, 117
BlsI	GCNGC	2 cut(s)	6, 118
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	3 cut(s)	165, 274, 357
Bpu10I	CCTNAGC	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	137
BsaWI	WCCGGW	2 cut(s)	160, 301
BseAI	TCCGGA	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	16, 103
BsgI	GTGCAG	2 cut(s)	72, 302
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	161, 302
BsmAI	GTCTC	2 cut(s)	128, 324
BsmBI	CGTCTC	2 cut(s)	128, 324
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	165, 274, 357
BssMI	GATC	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	40, 173
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	128, 324
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	16, 103
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	367
CviJI	RGCY	7 cut(s)	7, 39, 74, 84, 110, 313, 358
CviKI_1	RGCY	7 cut(s)	7, 39, 74, 84, 110, 313, 358
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	40, 173
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	315
Esp3I	CGTCTC	2 cut(s)	128, 324
FaiI	YATR	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	5, 117
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	5, 117
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	2 cut(s)	5, 117
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	161, 302
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	161, 302
Hpy188I	TCNGA	2 cut(s)	144, 174
Hpy188III	TCNNGA	3 cut(s)	59, 161, 353
HpyCH4IV	ACGT	2 cut(s)	236, 365
HpyCH4V	TGCA	3 cut(s)	4, 89, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	40, 173
HpySE526I	ACGT	2 cut(s)	236, 365
Hsp92I	GRCGYC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	3 cut(s)	174, 315, 338
Lsp1109I	GCAGC	2 cut(s)	16, 103
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	236, 365
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	7 cut(s)	23, 26, 29, 74, 77, 229, 242
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	5 cut(s)	128, 147, 192, 211, 221
MluNI	TGGCCA	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	250, 307
MnlI	CCTC	4 cut(s)	19, 22, 150, 329
Mox20I	TGGCCA	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	2 cut(s)	161, 302
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	55
NlaIV	GGNNCC	3 cut(s)	165, 274, 357
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	6, 118
Ppu21I	YACGTR	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	165, 274, 357
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	315
SatI	GCNGC	2 cut(s)	5, 117
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	6 cut(s)	9, 41, 112, 239, 315, 368
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	5 cut(s)	128, 147, 192, 211, 221
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	315
TaiI	ACGT	2 cut(s)	239, 368
TaqI	TCGA	2 cut(s)	48, 315
TasI	AATT	5 cut(s)	128, 147, 192, 211, 221
TfiI	GAWTC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	4, 116
TspDTI	ATGAA	3 cut(s)	117, 222, 333
TspGWI	ACGGA	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	128, 211
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.