Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

81676502 .. 81676970

Gene Structure 469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG585500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGGGAGACGATGCGGTGGCTCAAGGCAGAGACCTTGGTGATTCAAGCTTTGGATTGGAAGACCGAAATGATGTTTTGGGTAATTTTGGGTTCTGAGAATAGTGAAAGAGAGAGAGAGTCTGTAAAGCAAGGAGTGGAGGAGACGAAGCTTGAAGAAGAAGAACAAGACGAGGGGAAAAGCTTAGGGTTCGGCAAAGATCGGGAAGAAGAGATGGCCAAACGAGGCTCTGCACTCAAAGAAGACGAAGTAGCTTCTGTTGCTGATGTTGAATTTGAGACGCCTCTGAAAATGGTGGAGTATCCGGACCCTATTCTGAGAGCAAAGAATAAGAGAATTGAACCGTTTGATGAAAATTTGAAGAAATTAGTGGAAGAAATGTTTGATATAATGTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

133

Amino Acids

15.7

Weight (kDa)

4.63

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	96 - 133	5.9e-06	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	2 cut(s)	272, 355
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	47, 155, 272, 341, 361
AluBI	AGCT	4 cut(s)	50, 151, 183, 254
AluI	AGCT	4 cut(s)	50, 151, 183, 254
Alw26I	GTCTC	4 cut(s)	2, 26, 137, 272
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	1 cut(s)	216
ApoI	RAATTY	2 cut(s)	272, 355
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	218
BbsI	GAAGAC	2 cut(s)	68, 249
BccI	CCATC	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	312
BcoDI	GTCTC	4 cut(s)	2, 26, 137, 272
BfuI	GTATCC	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	3
BpiI	GAAGAC	2 cut(s)	68, 249
Bpu10I	CCTNAGC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	87, 308
BseRI	GAGGAG	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	305
BsmAI	GTCTC	4 cut(s)	2, 26, 137, 272
BsmBI	CGTCTC	3 cut(s)	2, 137, 272
BsnI	GGCC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	26
Bsp13I	TCCGGA	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	88, 309
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	96, 184, 317
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	4 cut(s)	2, 26, 137, 272
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstV2I	GAAGAC	2 cut(s)	68, 249
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	394
CviJI	RGCY	7 cut(s)	22, 50, 151, 183, 218, 228, 254
CviKI_1	RGCY	7 cut(s)	22, 50, 151, 183, 218, 228, 254
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	96, 184, 317
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	3 cut(s)	2, 137, 272
FaiI	YATR	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	305
HgaI	GACGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	281
HindIII	AAGCTT	3 cut(s)	48, 149, 181
HinfI	GANTC	2 cut(s)	43, 119
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	97, 288, 318
Hpy188III	TCNNGA	2 cut(s)	203, 305
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	96, 184, 317
Hsp92I	GRCGYC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	1 cut(s)	318
LweI	GCATC	1 cut(s)	3
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	9 cut(s)	73, 167, 170, 173, 218, 221, 254, 373, 386
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	5 cut(s)	84, 272, 336, 355, 365
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	133, 166, 218, 294
Mox20I	TGGCCA	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	128
SetI	ASST	5 cut(s)	38, 52, 153, 185, 256
SfaNI	GCATC	1 cut(s)	3
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	5 cut(s)	84, 272, 336, 355, 365
SsiI	CCGC	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	5 cut(s)	84, 272, 336, 355, 365
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	272, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.