Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

41227100 .. 41228122

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCAAACGAGGCTATGCACTCAAAGAAGACGAAGAAGCTTTTGATGCCTCGAAAATTGTGGAGTATCCGGATCGAGCAAAGAATAAGAGAATTGAATCGTTTGATGAAAATTTGAAGAAATTAGTGGAGGAAATGTTTGATATAATAACTGATGGCATTAGGCAAGTTGGAATCAATGTGCAATTGATGGTGTTCAATCCGGTTGGTGAGTGCGGCGAAGGGTTGGATACGAAGGGGGTTGTGGTTGTAGCCGTTCCAAAGAGGACGTCCGTACTTTTGCTAAAGTGCGGACGTCAACGCCGCAGCTCGCTCGGGAGCGACGAAGCGGCGAGGCTTGCCGGACGGACGGTCTGCAGTCGGTGGAGTCGCCGGCGACGTGGTTGCGGTGCTGCCCGAAACTTACGGTTGCGTGAGTTCGTTGCACGAAACCTGCAACCTCGACCTCGATCGCTGCTCGAAGCTGTTTGGGATGCCTCCGGGCTCCGTGATGCCCGATTCGCTCCTATGTCGCGGCCGAAACGCTGCGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

9.86

Isoelectric Point (pI)

66.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	272, 298
Acc36I	ACCTGC	1 cut(s)	441
AccII	CGCG	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	6 cut(s)	216, 291, 304, 329, 387, 514
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	2 cut(s)	3, 515
AcsI	RAATTY	1 cut(s)	112
AcyI	GRCGYC	2 cut(s)	269, 295
AfaI	GTAC	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	98, 118, 199
AhdI	GACNNNNNGTC	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	380
AluBI	AGCT	3 cut(s)	41, 309, 464
AluI	AGCT	3 cut(s)	41, 309, 464
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	2 cut(s)	3, 515
ApeKI	GCWGC	4 cut(s)	306, 392, 454, 525
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	4 cut(s)	318, 379, 441, 512
BccI	CCATC	2 cut(s)	149, 184
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	4 cut(s)	295, 329, 366, 400
BciVI	GTATCC	2 cut(s)	78, 223
BcnI	CCSGG	1 cut(s)	481
BfmI	CTRYAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	441
BfuI	GTATCC	2 cut(s)	78, 223
BisI	GCNGC	8 cut(s)	217, 304, 307, 330, 393, 455, 515, 526
BlsI	GCNGC	8 cut(s)	218, 305, 308, 331, 394, 456, 516, 527
Bme1390I	CCNGG	1 cut(s)	481
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	37, 463, 481
BpiI	GAAGAC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	269, 295
BsaWI	WCCGGW	2 cut(s)	70, 202
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse118I	RCCGGY	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	70
BseGI	GGATG	1 cut(s)	478
BseX3I	CGGCCG	1 cut(s)	515
BseXI	GCAGC	4 cut(s)	318, 379, 441, 512
Bsh1236I	CGCG	1 cut(s)	514
Bsh1285I	CGRYCG	2 cut(s)	452, 518
BshFI	GGCC	2 cut(s)	5, 517
BsiEI	CGRYCG	2 cut(s)	452, 518
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	5 cut(s)	71, 203, 342, 373, 480
BsnI	GGCC	2 cut(s)	5, 517
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	73, 449
BspACI	CCGC	6 cut(s)	216, 291, 304, 329, 387, 514
BspANI	GGCC	2 cut(s)	5, 517
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	485
BspMAI	CTGCAG	1 cut(s)	359
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	372
BssMI	GATC	2 cut(s)	73, 449
BssNI	GRCGYC	2 cut(s)	269, 295
Bst4CI	ACNGT	2 cut(s)	352, 408
BstACI	GRCGYC	2 cut(s)	269, 295
BstC8I	GCNNGC	3 cut(s)	311, 339, 374
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	514
BstKTI	GATC	2 cut(s)	76, 452
BstMBI	GATC	2 cut(s)	73, 449
BstMCI	CGRYCG	2 cut(s)	452, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 338, 500
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	4 cut(s)	318, 379, 441, 512
BstV2I	GAAGAC	1 cut(s)	36
BstZI	CGGCCG	1 cut(s)	515
BsuI	GTATCC	2 cut(s)	78, 223
BsuRI	GGCC	2 cut(s)	5, 517
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	478
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	311, 339, 374
Cfr10I	RCCGGY	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	275
CviJI	RGCY	9 cut(s)	5, 15, 41, 254, 309, 337, 464, 484, 517
CviKI_1	RGCY	9 cut(s)	5, 15, 41, 254, 309, 337, 464, 484, 517
CviQI	GTAC	1 cut(s)	275
DpnI	GATC	2 cut(s)	75, 451
DpnII	GATC	2 cut(s)	73, 449
DriI	GACNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	2 cut(s)	3, 515
EagI	CGGCCG	1 cut(s)	515
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EclXI	CGGCCG	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	486
Eco52I	CGGCCG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	486
FaiI	YATR	3 cut(s)	18, 146, 509
Fnu4HI	GCNGC	8 cut(s)	217, 304, 307, 330, 393, 455, 515, 526
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	8 cut(s)	217, 304, 307, 330, 393, 455, 515, 526
GluI	GCNGC	8 cut(s)	217, 304, 307, 330, 393, 455, 515, 526
HaeIII	GGCC	2 cut(s)	5, 517
HapII	CCGG	5 cut(s)	71, 203, 342, 373, 480
Hin1I	GRCGYC	2 cut(s)	269, 295
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	4 cut(s)	98, 174, 367, 498
HpaII	CCGG	5 cut(s)	71, 203, 342, 373, 480
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188III	TCNNGA	2 cut(s)	71, 316
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	2 cut(s)	326, 381
HpyAV	CCTTC	2 cut(s)	215, 229
HpyCH4III	ACNGT	2 cut(s)	352, 408
HpyCH4IV	ACGT	3 cut(s)	269, 295, 379
HpyCH4V	TGCA	5 cut(s)	20, 184, 357, 425, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 338, 500
HpySE526I	ACGT	3 cut(s)	269, 295, 379
Hsp92I	GRCGYC	2 cut(s)	269, 295
Kpn2I	TCCGGA	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	73, 449
LmnI	GCTCC	3 cut(s)	318, 489, 508
LpnPI	CCDG	6 cut(s)	84, 216, 355, 386, 446, 493
Lsp1109I	GCAGC	4 cut(s)	318, 379, 441, 512
LweI	GCATC	3 cut(s)	37, 463, 481
MaeII	ACGT	3 cut(s)	269, 295, 379
MalI	GATC	2 cut(s)	75, 451
MboI	GATC	2 cut(s)	73, 449
MboII	GAAGA	3 cut(s)	41, 47, 130
MfeI	CAATTG	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	57, 93, 112, 122, 185
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	151, 207
MnlI	CCTC	8 cut(s)	5, 61, 124, 258, 327, 450, 456, 487
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	372
MroI	TCCGGA	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	71, 203, 342, 373, 480
MspR9I	CCNGG	1 cut(s)	481
MunI	CAATTG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	47, 338, 500
NaeI	GCCGGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	481
NdeII	GATC	2 cut(s)	73, 449
NgoMIV	GCCGGC	1 cut(s)	372
NlaIV	GGNNCC	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 376
PdiI	GCCGGC	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	98, 174, 498
PkrI	GCNGC	8 cut(s)	218, 305, 308, 331, 394, 456, 516, 527
Ple19I	CGATCG	1 cut(s)	452
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	359
PvuI	CGATCG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SatI	GCNGC	8 cut(s)	217, 304, 307, 330, 393, 455, 515, 526
Sau3AI	GATC	2 cut(s)	73, 449
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	9 cut(s)	43, 272, 298, 311, 382, 435, 442, 448, 466
SfaNI	GCATC	3 cut(s)	37, 463, 481
SfcI	CTRYAG	1 cut(s)	355
SgrAI	CRCCGGYG	1 cut(s)	372
Sse9I	AATT	5 cut(s)	57, 93, 112, 122, 185
SsiI	CCGC	6 cut(s)	216, 291, 304, 329, 387, 514
StyD4I	CCNGG	1 cut(s)	479
TaaI	ACNGT	2 cut(s)	352, 408
TaiI	ACGT	3 cut(s)	272, 298, 382
TaqI	TCGA	5 cut(s)	53, 76, 442, 448, 459
TasI	AATT	5 cut(s)	57, 93, 112, 122, 185
TauI	GCSGC	4 cut(s)	219, 306, 332, 517
TfiI	GAWTC	3 cut(s)	98, 174, 498
TseI	GCWGC	4 cut(s)	306, 392, 454, 525
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	3 cut(s)	262, 361, 476
XapI	RAATTY	1 cut(s)	112
ZraI	GACGTC	2 cut(s)	270, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.