Rroxscaffold_2G00079960

Removes the formyl group from the N-terminal Met of newly synthesized proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005371
Physical Location & Seq
Reverse (-)
2867270 .. 2869756
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079960.1

Sequence Viewer

Length: 855 bp
ATGTTCTCAGCTACACTACTAGTGTTTGTGGCCATGGCTTGTGCGGCTTGGCTCCAGCCAATTTCCTCACCCCACTCTATCTTTCCATCTCTCTGCCGCCGCCCAATTTTTCCCGCCATCTTCCACCGTTTCACAACCTTCTCCTCCTCCGGCCAGCCACTATCCGCCGCCAACCGCCTCACTCCGGTCCACGCGCAGGCCAAACGAGGCTTCTCACTCAAAGAAGACGAAGTTGCTTCTGCTGCGGATGTTGAATTTGAGACGCCTCTGAAAATTGTGGAGTATCCGGACCCTATACTGAGAGCAAAGAACAAGAGAATTGAATCGTTTGATGATAATTTGAAGAAATTAGTGGAGGAAATGTTTGATATAATGTACAAAACTGATGGCATTGGGCTCTCGGCGCCGCAAGTTGGAATCAATGTGCAGCTGATGGTGTTCAATCCGGTTGGGGAGCGCGGCGAAGGGGAGGAGATTGTGCTTGTGAATCCAAGAGTGAGCAGATATTCGCAGAAAACGAGGCTCTTTGAAGAGGGTTGCTTGTCCTTCCCAGGGATTTATGCTGATGTTCAGAGACCAGAAACTGTGAAAATAGACGCACGGGACATCAGTGGTGCGAGGTTTACAGTCAACTTGTCCGGTCTTCCTGCACGGGTGTTCCAGCATGAATTTGACCATTTGCAGGGTATTCTTTTCTTTGATAGAATGACTGAAGGAGTTCTTGAAAGCATCTCTGAACAGCTACAGGCATTAGAGAAGAAGTATGAAGATAAAACAGGACTTCCAAGTCCTGAAAGGATAGAAAGCCGTAAAAGGATGAAGTTGAAGGCTGCTGCTGGTTTTGGGAAATCATAG

Protein Analysis

284

Amino Acids

31.8

Weight (kDa)

6.98

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep_deformylase PF01327 90 - 238 2e-52 Polypeptide deformylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 786
AccB1I GGYRCC 1 cut(s) 403
AccII CGCG 2 cut(s) 194, 459
AccIII TCCGGA 1 cut(s) 286
AcoI YGGCCR 2 cut(s) 30, 151
AcsI RAATTY 2 cut(s) 254, 668
AcuI CTGAAG 1 cut(s) 732
AcyI GRCGYC 2 cut(s) 263, 404
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 5 cut(s) 184, 196, 413, 552, 682
AgsI TTSAA 7 cut(s) 254, 323, 343, 442, 530, 725, 826
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 3 cut(s) 11, 430, 742
AluI AGCT 3 cut(s) 11, 430, 742
Alw26I GTCTC 2 cut(s) 254, 568
AlwNI CAGNNNCTG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 3 cut(s) 30, 151, 198
ApeKI GCWGC 4 cut(s) 242, 427, 830, 833
ApoI RAATTY 2 cut(s) 254, 668
Asp700I GAANNNNTTC 1 cut(s) 717
AspLEI GCGC 3 cut(s) 196, 406, 459
AspS9I GGNCC 2 cut(s) 187, 289
AsuHPI GGTGA 1 cut(s) 60
AvaII GGWCC 2 cut(s) 187, 289
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 2 cut(s) 231, 635
BbvI GCAGC 4 cut(s) 229, 439, 817, 820
BccI CCATC 4 cut(s) 94, 125, 380, 427
BceAI ACGGC 1 cut(s) 792
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 254, 568
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 743
BfoI RGCGCY 1 cut(s) 407
BfuI GTATCC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 187, 289
BmgT120I GGNCC 2 cut(s) 187, 289
BmiI GGNNCC 3 cut(s) 53, 291, 405
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 738
BpiI GAAGAC 2 cut(s) 231, 635
BpmI CTGGAG 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 263, 404
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 33, 550, 551
BsaWI WCCGGW 4 cut(s) 184, 286, 445, 638
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 196, 413, 552, 682
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 33, 550, 551
BseGI GGATG 2 cut(s) 253, 822
BseLI CCNNNNNNNGG 5 cut(s) 184, 196, 413, 552, 682
BseMII CTCAG 2 cut(s) 21, 290
BseRI GAGGAG 3 cut(s) 133, 136, 485
BseXI GCAGC 4 cut(s) 229, 439, 817, 820
BsgI GTGCAG 2 cut(s) 446, 633
Bsh1236I CGCG 2 cut(s) 194, 459
BshFI GGCC 3 cut(s) 32, 153, 200
BshNI GGYRCC 1 cut(s) 403
BsiSI CCGG 5 cut(s) 150, 185, 287, 446, 639
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 5 cut(s) 184, 196, 413, 552, 682
BsmAI GTCTC 2 cut(s) 254, 568
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 617
BsnI GGCC 3 cut(s) 32, 153, 200
Bso31I GGTCTC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 375
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 3 cut(s) 32, 153, 200
BspCNI CTCAG 2 cut(s) 20, 291
BspEI TCCGGA 1 cut(s) 286
BspFNI CGCG 2 cut(s) 194, 459
BspLI GGNNCC 3 cut(s) 53, 291, 405
BspT107I GGYRCC 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 375
BssECI CCNNGG 3 cut(s) 33, 550, 551
BssNI GRCGYC 2 cut(s) 263, 404
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 128, 586, 628
Bst6I CTCTTC 1 cut(s) 525
BstACI GRCGYC 2 cut(s) 263, 404
BstAUI TGTACA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 155, 198
BstDEI CTNAG 2 cut(s) 7, 299
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 253, 822
BstFNI CGCG 2 cut(s) 194, 459
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 3 cut(s) 196, 406, 459
BstMAI GTCTC 2 cut(s) 254, 568
BstMWI GCNNNNNNNGC 3 cut(s) 44, 242, 403
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 743
BstUI CGCG 2 cut(s) 194, 459
BstV1I GCAGC 4 cut(s) 229, 439, 817, 820
BstV2I GAAGAC 2 cut(s) 231, 635
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 3 cut(s) 32, 153, 200
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 253, 822
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 155, 198
CaiI CAGNNNCTG 1 cut(s) 584
CfoI GCGC 3 cut(s) 196, 406, 459
Cfr13I GGNCC 2 cut(s) 187, 289
CseI GACGC 2 cut(s) 271, 605
Csp6I GTAC 1 cut(s) 376
CviAII CATG 2 cut(s) 34, 665
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 7, 299
DinI GGCGCC 1 cut(s) 405
DrdI GACNNNNNNGTC 1 cut(s) 786
DseDI GACNNNNNNGTC 1 cut(s) 786
EaeI YGGCCR 2 cut(s) 30, 151
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
EciI GGCGGA 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 187, 289
Eco57I CTGAAG 1 cut(s) 732
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 399
EgeI GGCGCC 1 cut(s) 405
EheI GGCGCC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 2 cut(s) 37, 668
FaiI YATR 7 cut(s) 35, 296, 371, 561, 666, 765, 853
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FaqI GGGAC 1 cut(s) 617
FatI CATG 2 cut(s) 33, 664
FauI CCCGC 1 cut(s) 121
FokI GGATG 2 cut(s) 260, 829
FriOI GRGCYC 1 cut(s) 399
FspBI CTAG 1 cut(s) 20
GlaI GCGC 3 cut(s) 195, 405, 458
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 3 cut(s) 32, 153, 200
HapII CCGG 5 cut(s) 150, 185, 287, 446, 639
HgaI GACGC 2 cut(s) 271, 605
HhaI GCGC 3 cut(s) 196, 406, 459
Hin1I GRCGYC 2 cut(s) 263, 404
Hin1II CATG 2 cut(s) 37, 668
Hin6I GCGC 3 cut(s) 194, 404, 457
HinP1I GCGC 3 cut(s) 194, 404, 457
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 3 cut(s) 323, 417, 487
HpaII CCGG 5 cut(s) 150, 185, 287, 446, 639
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 3 cut(s) 190, 624, 631
Hpy188I TCNGA 3 cut(s) 270, 573, 736
Hpy188III TCNNGA 3 cut(s) 287, 722, 791
Hpy8I GTNNAC 3 cut(s) 190, 624, 631
HpyAV CCTTC 5 cut(s) 148, 458, 556, 707, 820
HpyCH4III ACNGT 3 cut(s) 128, 586, 628
HpyCH4V TGCA 3 cut(s) 427, 650, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 242, 403
HpyF3I CTNAG 2 cut(s) 7, 299
Hsp92I GRCGYC 2 cut(s) 263, 404
Hsp92II CATG 2 cut(s) 37, 668
HspAI GCGC 3 cut(s) 194, 404, 457
KasI GGCGCC 1 cut(s) 403
Kpn2I TCCGGA 1 cut(s) 286
LmnI GCTCC 2 cut(s) 57, 454
Lsp1109I GCAGC 4 cut(s) 229, 439, 817, 820
LweI GCATC 1 cut(s) 738
MaeI CTAG 1 cut(s) 20
MboII GAAGA 7 cut(s) 112, 236, 355, 542, 635, 769, 779
MhlI GDGCHC 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 8 cut(s) 60, 105, 254, 273, 318, 337, 347, 668
MluNI TGGCCA 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 394
Mox20I TGGCCA 1 cut(s) 32
MroI TCCGGA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 717
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 5 cut(s) 150, 185, 287, 446, 639
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 2 cut(s) 194, 459
MwoI GCNNNNNNNGC 3 cut(s) 44, 242, 403
NarI GGCGCC 1 cut(s) 404
NcoI CCATGG 1 cut(s) 33
NlaIII CATG 2 cut(s) 37, 668
NlaIV GGNNCC 3 cut(s) 53, 291, 405
NmeAIII GCCGAG 1 cut(s) 380
PasI CCCWGGG 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 3 cut(s) 323, 417, 487
PluTI GGCGCC 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 3 cut(s) 53, 291, 405
PspPI GGNCC 2 cut(s) 187, 289
PstNI CAGNNNCTG 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
Sau96I GGNCC 2 cut(s) 187, 289
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 399
SetI ASST 5 cut(s) 13, 140, 432, 623, 744
SfaNI GCATC 1 cut(s) 738
SfcI CTRYAG 1 cut(s) 743
SfoI GGCGCC 1 cut(s) 405
SinI GGWCC 2 cut(s) 187, 289
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 8 cut(s) 60, 105, 254, 273, 318, 337, 347, 668
SspDI GGCGCC 1 cut(s) 403
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 3 cut(s) 128, 586, 628
TasI AATT 8 cut(s) 60, 105, 254, 273, 318, 337, 347, 668
TatI WGTACW 1 cut(s) 375
TauI GCSGC 6 cut(s) 47, 99, 102, 170, 409, 462
TfiI GAWTC 3 cut(s) 323, 417, 487
TscAI CASTG 1 cut(s) 616
TseI GCWGC 4 cut(s) 242, 427, 830, 833
TspDTI ATGAA 3 cut(s) 681, 780, 833
TspRI CASTG 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 187, 289
XapI RAATTY 2 cut(s) 254, 668
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.