Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Forward (+)

37837792 .. 37841234

Gene Structure 3443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50950.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTTGTGCTGCTTGTCTGCTGCAACCAATTTCCTCACCCCACTCTATCTTTCCATCTCTCTGCCGCCGCCGGCCACTTTTTCCGGCCATATTCCACCGCTTCTGCACGTTCTCCTCCGCCGACCGGCCACTTTCCACGGCGAACCGGTTCACTGCGGTCCGCGCGCAGGCCAAGCGAGGCTTCTCACTCAAAGAAGACCAAGTAGCTTCTGCTGCTGATGTTGAATTTGAGACGCCTCTGGAAATTGTGGAGTATCCGGACCCTATACTGAGAGCAAAGAACAAGAGACTCGATACGTTTGATGATAATTTGAAGAAACTAGTGGAGGAAATGTTTGATATAATGTACAGAACTGATGGCATTGGGCTCTCGGCGCCGCAAGTTGGGATCAATGTGCAGCTTATGGTGTTCAATCCGGTTGGCGAGCGCGGCGAGGGGGAAGAGATTGTGCTTGTGAATCCGAGAGTTAGTAGATATTCGCAGAAAACGAGACTCTTTAATGAGGGTTGCTTGTCCTTCCCGGGGATTTACGCTGATGTTCAGAGACCAGAGTCTGTGAAAATAGATGCACGGGACATCAGTGGTGCGAGGTTTACAGTCAACTTGTCTGGTCTTCCTGCCCGGGTGTTCCAGCATGAATTTGACCATTTGCAGGGTATTCTTTTCTTTGATAGAATGACTGAAGGAGTTCTTGAAAGTATCTCTGAACAGCTACAGGCATTAGAGAAGAAGTACGAGGATAAGACAGGACTTCCAAGTCCTGAAAGGATAGAAAGCCGTAAAAGGATGAAGTTAAAGGCTGCTGCTGGTTTTGGGAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

276

Amino Acids

30.94

Weight (kDa)

8.24

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	1 - 118	5.9e-41	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	3 cut(s)	165, 167, 432
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	8 cut(s)	67, 70, 100, 120, 158, 163, 380, 432
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	3 cut(s)	74, 87, 128
AcsI	RAATTY	2 cut(s)	227, 641
AcuI	CTGAAG	1 cut(s)	705
AcyI	GRCGYC	2 cut(s)	236, 377
AfaI	GTAC	2 cut(s)	350, 737
AfiI	CCNNNNNNNGG	5 cut(s)	126, 169, 386, 525, 655
AgeI	ACCGGT	1 cut(s)	147
AgsI	TTSAA	4 cut(s)	227, 316, 415, 698
AhlI	ACTAGT	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	3 cut(s)	209, 403, 715
AluI	AGCT	3 cut(s)	209, 403, 715
Alw26I	GTCTC	4 cut(s)	227, 283, 487, 541
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	2 cut(s)	523, 624
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	4 cut(s)	74, 87, 128, 171
ApeKI	GCWGC	6 cut(s)	11, 22, 215, 400, 803, 806
ApoI	RAATTY	2 cut(s)	227, 641
AsiGI	ACCGGT	1 cut(s)	147
Asp700I	GAANNNNTTC	2 cut(s)	149, 690
AspLEI	GCGC	4 cut(s)	167, 169, 379, 432
AspS9I	GGNCC	2 cut(s)	160, 262
AsuC2I	CCSGG	4 cut(s)	524, 525, 625, 626
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	2 cut(s)	523, 624
AvaII	GGWCC	2 cut(s)	160, 262
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	2 cut(s)	204, 608
BbvI	GCAGC	5 cut(s)	9, 202, 412, 790, 793
BccI	CCATC	2 cut(s)	64, 353
BceAI	ACGGC	2 cut(s)	156, 765
BciVI	GTATCC	1 cut(s)	267
BcnI	CCSGG	4 cut(s)	524, 525, 625, 626
BcoDI	GTCTC	4 cut(s)	227, 283, 487, 541
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	716
BfoI	RGCGCY	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	267
Bme1390I	CCNGG	4 cut(s)	524, 525, 625, 626
Bme18I	GGWCC	2 cut(s)	160, 262
BmeT110I	CYCGRG	2 cut(s)	523, 624
BmgT120I	GGNCC	2 cut(s)	160, 262
BmiI	GGNNCC	2 cut(s)	264, 378
BmrFI	CCNGG	4 cut(s)	524, 525, 625, 626
BmsI	GCATC	1 cut(s)	559
BoxI	GACNNNNGTC	1 cut(s)	553
BpiI	GAAGAC	2 cut(s)	204, 608
BpuMI	CCSGG	4 cut(s)	524, 525, 625, 626
BsaHI	GRCGYC	2 cut(s)	236, 377
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	4 cut(s)	138, 523, 524, 624
BsaWI	WCCGGW	3 cut(s)	147, 259, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 169, 386, 525, 655
Bse118I	RCCGGY	3 cut(s)	72, 126, 147
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	4 cut(s)	138, 523, 524, 624
BseGI	GGATG	1 cut(s)	795
BseLI	CCNNNNNNNGG	5 cut(s)	126, 169, 386, 525, 655
BseMII	CTCAG	1 cut(s)	263
BsePI	GCGCGC	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	5 cut(s)	9, 202, 412, 790, 793
BsgI	GTGCAG	2 cut(s)	91, 419
Bsh1236I	CGCG	3 cut(s)	165, 167, 432
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	4 cut(s)	76, 89, 130, 173
BshNI	GGYRCC	1 cut(s)	376
BshTI	ACCGGT	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	127
BsiHKCI	CYCGRG	2 cut(s)	523, 624
BsiSI	CCGG	8 cut(s)	73, 86, 127, 148, 260, 419, 524, 625
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	5 cut(s)	126, 169, 386, 525, 655
BsmAI	GTCTC	4 cut(s)	227, 283, 487, 541
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	4 cut(s)	76, 89, 130, 173
Bso31I	GGTCTC	1 cut(s)	541
BsoBI	CYCGRG	2 cut(s)	523, 624
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp13I	TCCGGA	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	390
BspACI	CCGC	8 cut(s)	67, 70, 100, 120, 158, 163, 380, 432
BspANI	GGCC	4 cut(s)	76, 89, 130, 173
BspCNI	CTCAG	1 cut(s)	264
BspEI	TCCGGA	1 cut(s)	259
BspFNI	CGCG	3 cut(s)	165, 167, 432
BspLI	GGNNCC	2 cut(s)	264, 378
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	541
BsrFI	RCCGGY	3 cut(s)	72, 126, 147
BsrGI	TGTACA	1 cut(s)	348
BssAI	RCCGGY	3 cut(s)	72, 126, 147
BssECI	CCNNGG	4 cut(s)	138, 523, 524, 624
BssHII	GCGCGC	1 cut(s)	165
BssMI	GATC	1 cut(s)	390
BssNI	GRCGYC	2 cut(s)	236, 377
Bst4CI	ACNGT	1 cut(s)	601
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	2 cut(s)	236, 377
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	4 cut(s)	74, 167, 171, 428
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	795
BstFNI	CGCG	3 cut(s)	165, 167, 432
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	4 cut(s)	167, 169, 379, 432
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	4 cut(s)	227, 283, 487, 541
BstMBI	GATC	1 cut(s)	390
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 164, 175, 215, 376, 432
BstPAI	GACNNNNGTC	1 cut(s)	553
BstSCI	CCNGG	4 cut(s)	522, 523, 623, 624
BstSFI	CTRYAG	1 cut(s)	716
BstUI	CGCG	3 cut(s)	165, 167, 432
BstV1I	GCAGC	5 cut(s)	9, 202, 412, 790, 793
BstV2I	GAAGAC	2 cut(s)	204, 608
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	76, 89, 130, 173
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	795
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 589
Cac8I	GCNNGC	4 cut(s)	74, 167, 171, 428
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	4 cut(s)	167, 169, 379, 432
Cfr10I	RCCGGY	3 cut(s)	72, 126, 147
Cfr13I	GGNCC	2 cut(s)	160, 262
Cfr9I	CCCGGG	2 cut(s)	523, 624
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	349, 736
CspAI	ACCGGT	1 cut(s)	147
CspI	CGGWCCG	1 cut(s)	160
CviAII	CATG	1 cut(s)	638
CviQI	GTAC	2 cut(s)	349, 736
DdeI	CTNAG	1 cut(s)	272
DinI	GGCGCC	1 cut(s)	378
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
DrdI	GACNNNNNNGTC	1 cut(s)	759
DseDI	GACNNNNNNGTC	1 cut(s)	759
EaeI	YGGCCR	3 cut(s)	74, 87, 128
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	2 cut(s)	160, 262
Eco57I	CTGAAG	1 cut(s)	705
Eco88I	CYCGRG	2 cut(s)	523, 624
EcoT38I	GRGCYC	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	1 cut(s)	641
FaiI	YATR	6 cut(s)	92, 269, 344, 407, 639, 826
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 678, 710
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	1 cut(s)	637
FokI	GGATG	1 cut(s)	802
FriOI	GRGCYC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	4 cut(s)	166, 168, 378, 431
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	76, 89, 130, 173
HapII	CCGG	8 cut(s)	73, 86, 127, 148, 260, 419, 524, 625
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	4 cut(s)	167, 169, 379, 432
Hin1I	GRCGYC	2 cut(s)	236, 377
Hin1II	CATG	1 cut(s)	641
Hin6I	GCGC	4 cut(s)	165, 167, 377, 430
HinP1I	GCGC	4 cut(s)	165, 167, 377, 430
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	4 cut(s)	291, 460, 495, 554
HpaII	CCGG	8 cut(s)	73, 86, 127, 148, 260, 419, 524, 625
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	153, 597, 604
Hpy188I	TCNGA	3 cut(s)	465, 546, 709
Hpy188III	TCNNGA	4 cut(s)	242, 260, 695, 764
Hpy8I	GTNNAC	3 cut(s)	153, 597, 604
HpyAV	CCTTC	2 cut(s)	529, 680
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	2 cut(s)	110, 299
HpyCH4V	TGCA	5 cut(s)	25, 108, 400, 572, 655
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 164, 175, 215, 376, 432
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	2 cut(s)	110, 299
Hsp92I	GRCGYC	2 cut(s)	236, 377
Hsp92II	CATG	1 cut(s)	641
HspAI	GCGC	4 cut(s)	165, 167, 377, 430
KasI	GGCGCC	1 cut(s)	376
Kpn2I	TCCGGA	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	390
Lsp1109I	GCAGC	5 cut(s)	9, 202, 412, 790, 793
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	110, 299
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	5 cut(s)	209, 328, 455, 608, 742
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	5 cut(s)	30, 227, 246, 310, 641
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	285, 489, 563
MnlI	CCTC	9 cut(s)	46, 127, 173, 249, 322, 430, 499, 585, 733
MroI	TCCGGA	1 cut(s)	259
MroNI	GCCGGC	1 cut(s)	72
MroXI	GAANNNNTTC	2 cut(s)	149, 690
MseI	TTAA	2 cut(s)	501, 797
MspI	CCGG	8 cut(s)	73, 86, 127, 148, 260, 419, 524, 625
MspR9I	CCNGG	4 cut(s)	524, 525, 625, 626
MvnI	CGCG	3 cut(s)	165, 167, 432
MwoI	GCNNNNNNNGC	6 cut(s)	11, 164, 175, 215, 376, 432
NaeI	GCCGGC	1 cut(s)	74
NarI	GGCGCC	1 cut(s)	377
NciI	CCSGG	4 cut(s)	524, 525, 625, 626
NdeII	GATC	1 cut(s)	390
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	641
NlaIV	GGNNCC	2 cut(s)	264, 378
NmeAIII	GCCGAG	1 cut(s)	353
PauI	GCGCGC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PdiI	GCCGGC	1 cut(s)	74
PdmI	GAANNNNTTC	2 cut(s)	149, 690
PfeI	GAWTC	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	147
PleI	GAGTC	3 cut(s)	285, 489, 562
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	3 cut(s)	285, 489, 562
PshAI	GACNNNNGTC	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	264, 378
PspPI	GGNCC	2 cut(s)	160, 262
PstNI	CAGNNNCTG	1 cut(s)	557
PteI	GCGCGC	1 cut(s)	165
RsaI	GTAC	2 cut(s)	350, 737
RsaNI	GTAC	2 cut(s)	349, 736
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	501, 797
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	2 cut(s)	160, 262
SchI	GAGTC	3 cut(s)	285, 489, 563
ScrFI	CCNGG	4 cut(s)	524, 525, 625, 626
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	6 cut(s)	113, 211, 302, 405, 596, 717
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	716
SfoI	GGCGCC	1 cut(s)	378
SinI	GGWCC	2 cut(s)	160, 262
SmaI	CCCGGG	2 cut(s)	525, 626
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	5 cut(s)	30, 227, 246, 310, 641
SsiI	CCGC	8 cut(s)	67, 70, 100, 120, 158, 163, 380, 432
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	4 cut(s)	522, 523, 623, 624
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	2 cut(s)	113, 302
TaqI	TCGA	1 cut(s)	294
TasI	AATT	5 cut(s)	30, 227, 246, 310, 641
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	4 cut(s)	69, 72, 382, 435
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	501, 797
Tru9I	TTAA	2 cut(s)	501, 797
TscAI	CASTG	2 cut(s)	160, 589
TseI	GCWGC	6 cut(s)	11, 22, 215, 400, 803, 806
TspDTI	ATGAA	2 cut(s)	654, 806
TspMI	CCCGGG	2 cut(s)	523, 624
TspRI	CASTG	2 cut(s)	160, 589
VpaK11BI	GGWCC	2 cut(s)	160, 262
XapI	RAATTY	2 cut(s)	227, 641
XmaI	CCCGGG	2 cut(s)	523, 624
XmnI	GAANNNNTTC	2 cut(s)	149, 690
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.