Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Reverse (-)

4785960 .. 4787996

Gene Structure 2037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGATTCTTCCGATTCCGGCGGAGAGTTTCAAGGTAGGATTCATCGGAGCTGGTAAAATGGCGGAGAGTATAGCTAGAGGTGTGGTTGCTTCCGGTGTGCTTCCTCCTAATCGTATATGCACCGCCGTTCACTCAAATCTCAATCGCCGTGATGTCTTCGAATCCTTTGGCGTCAATGTCTTCTCCACTAGCGAAGAAGTTGTTAAAGAAAGCGATGTTGTCATATTCTCTGTGAAACCTCAAGTTGTTAAGAAGGCTGTCACAGAATTAAAGTCGAAGCTTTCAAAGAATAAGATTCTGGTTTCTGTTGCAGCTGGAATCAAGTTGAATGATTTACAGGAATGGTCTGGTCAAGATCGATTCATAAGGGTGATGCCTAATACACCTGCCGCTGTTGGTGAGGCAGCTTCAGTTATGAGCCTTGGCACAGGAGCAACGGAAGAGGATGGAGCAATTGTTGCTATGTTGTTTGGCGCGGTGGGGAAGATATTGAAAGCTGATGAGAAAATGTTTGATGCTGTCACTGGTCTCAGTGGAAGTGGACCAGCATACATATTTTTAGCAATTGAAGCTTTAGCCGATGGAGGAGTAGCTGCTGGTTTACCCCGAGAGCTTGCATTGAGTTTAGCTTCACAGACCGTTCTTGGAGCTGCAACGATGGTTAGCAAAACTGGGAAGCATCCAGGTGTGTTGAAAGATGATGTTACCTCACCTGGCGGCACTACAATAGCCGGAGTTCATGAACTAGAGAAAGGCTCTTTCCGGGCAACACTTATGAATGCAGTTGTTGCTGCAGCTAAACGAAGCCGCGAGCTCTCACAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

276

Amino Acids

28.62

Weight (kDa)

7.81

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 107	1.2e-22	NADP oxidoreductase coenzyme F420-dependent
NAD_binding_2	PF03446	12 - 104	9.9e-06	NAD binding domain of 6-phosphogluconate dehydrogenase
P5CR_dimer	PF14748	169 - 273	1.8e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	397
AccII	CGCG	2 cut(s)	479, 813
AciI	CCGC	7 cut(s)	23, 65, 126, 393, 479, 720, 811
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	174
AgsI	TTSAA	6 cut(s)	34, 288, 331, 496, 572, 697
AjnI	CCWGG	2 cut(s)	685, 715
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	609
ApeKI	GCWGC	6 cut(s)	314, 407, 596, 653, 794, 797
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	3 cut(s)	385, 413, 705
AsuII	TTCGAA	1 cut(s)	162
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	819
BbsI	GAAGAC	2 cut(s)	151, 175
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	6 cut(s)	326, 419, 583, 640, 781, 809
BccI	CCATC	3 cut(s)	443, 578, 655
BceAI	ACGGC	2 cut(s)	113, 135
BciT130I	CCWGG	2 cut(s)	687, 717
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	3 cut(s)	78, 192, 749
BfmI	CTRYAG	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	9 cut(s)	315, 393, 408, 597, 654, 721, 795, 798, 811
BlsI	GCNGC	9 cut(s)	316, 394, 409, 598, 655, 722, 796, 799, 812
Bme1390I	CCNGG	3 cut(s)	687, 717, 767
Bme18I	GGWCC	1 cut(s)	545
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	545
BmrFI	CCNGG	3 cut(s)	687, 717, 767
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	3 cut(s)	366, 508, 691
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	2 cut(s)	151, 175
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
Bpu14I	TTCGAA	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	767
Bsa29I	ATCGAT	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse1I	ACTGG	2 cut(s)	532, 679
BseBI	CCWGG	2 cut(s)	687, 717
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	2 cut(s)	454, 682
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	2 cut(s)	532, 679
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	6 cut(s)	326, 419, 583, 640, 781, 809
Bsh1236I	CGCG	2 cut(s)	479, 813
BshVI	ATCGAT	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	4 cut(s)	20, 96, 735, 766
BsmAI	GTCTC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	787
Bso31I	GGTCTC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	609
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	7 cut(s)	23, 65, 126, 393, 479, 720, 811
BspCNI	CTCAG	1 cut(s)	546
BspDI	ATCGAT	1 cut(s)	361
BspFNI	CGCG	2 cut(s)	479, 813
BspHI	TCATGA	1 cut(s)	742
BspMAI	CTGCAG	1 cut(s)	799
BspMI	ACCTGC	1 cut(s)	397
BspT104I	TTCGAA	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	532, 679
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	687, 717
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	2 cut(s)	461, 791
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	618, 815
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	454, 682
BstFNI	CGCG	2 cut(s)	479, 813
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 572, 791
BstNI	CCWGG	2 cut(s)	687, 717
BstSCI	CCNGG	3 cut(s)	685, 715, 765
BstSFI	CTRYAG	1 cut(s)	795
BstUI	CGCG	2 cut(s)	479, 813
BstV1I	GCAGC	6 cut(s)	326, 419, 583, 640, 781, 809
BstV2I	GAAGAC	2 cut(s)	151, 175
Bsu15I	ATCGAT	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	454, 682
BtsIMutI	CAGTG	2 cut(s)	525, 541
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	618, 815
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	1 cut(s)	163
CviAII	CATG	1 cut(s)	743
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	2 cut(s)	38, 80
Ecl136II	GAGCTC	1 cut(s)	817
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	545
Eco53kI	GAGCTC	1 cut(s)	817
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	817
EcoRII	CCWGG	2 cut(s)	685, 715
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	1 cut(s)	746
FatI	CATG	1 cut(s)	742
Fnu4HI	GCNGC	9 cut(s)	315, 393, 408, 597, 654, 721, 795, 798, 811
FokI	GGATG	2 cut(s)	461, 669
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	9 cut(s)	315, 393, 408, 597, 654, 721, 795, 798, 811
FspBI	CTAG	3 cut(s)	78, 192, 749
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	9 cut(s)	315, 393, 408, 597, 654, 721, 795, 798, 811
HapII	CCGG	4 cut(s)	20, 96, 735, 766
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	746
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HindIII	AAGCTT	2 cut(s)	281, 573
HinfI	GANTC	7 cut(s)	7, 16, 42, 164, 298, 321, 363
HpaII	CCGG	4 cut(s)	20, 96, 735, 766
HphI	GGTGA	3 cut(s)	385, 413, 705
Hpy166II	GTNNAC	3 cut(s)	133, 545, 605
Hpy188I	TCNGA	2 cut(s)	15, 50
Hpy188III	TCNNGA	2 cut(s)	356, 743
Hpy8I	GTNNAC	3 cut(s)	133, 545, 605
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4V	TGCA	6 cut(s)	123, 314, 620, 656, 785, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 572, 791
HpyF3I	CTNAG	1 cut(s)	533
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	746
HspAI	GCGC	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	4 cut(s)	50, 434, 452, 650
Lsp1109I	GCAGC	6 cut(s)	326, 419, 583, 640, 781, 809
LweI	GCATC	3 cut(s)	366, 508, 691
MaeI	CTAG	3 cut(s)	78, 192, 749
MaeIII	GTNAC	3 cut(s)	262, 523, 706
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	5 cut(s)	151, 175, 209, 455, 499
MfeI	CAATTG	2 cut(s)	456, 567
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	3 cut(s)	269, 456, 567
MnlI	CCTC	7 cut(s)	74, 117, 252, 397, 439, 581, 721
MseI	TTAA	3 cut(s)	207, 252, 272
MslI	CAYNNNNRTG	2 cut(s)	371, 687
MspA1I	CMGCKG	2 cut(s)	317, 395
MspI	CCGG	4 cut(s)	20, 96, 735, 766
MspR9I	CCNGG	3 cut(s)	687, 717, 767
MunI	CAATTG	2 cut(s)	456, 567
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	2 cut(s)	687, 717
MvnI	CGCG	2 cut(s)	479, 813
MwoI	GCNNNNNNNGC	3 cut(s)	461, 572, 791
NciI	CCSGG	1 cut(s)	767
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	746
NmuCI	GTSAC	2 cut(s)	262, 523
NspV	TTCGAA	1 cut(s)	162
PagI	TCATGA	1 cut(s)	742
PaqCI	CACCTGC	1 cut(s)	397
PctI	GAATGC	1 cut(s)	787
PfeI	GAWTC	7 cut(s)	7, 16, 42, 164, 298, 321, 363
PkrI	GCNGC	9 cut(s)	316, 394, 409, 598, 655, 722, 796, 799, 812
Psp124BI	GAGCTC	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	685, 715
PspGI	CCWGG	2 cut(s)	685, 715
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	799
PvuII	CAGCTG	1 cut(s)	317
RseI	CAYNNNNRTG	2 cut(s)	371, 687
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	3 cut(s)	207, 252, 272
SatI	GCNGC	9 cut(s)	315, 393, 408, 597, 654, 721, 795, 798, 811
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	545
ScrFI	CCNGG	3 cut(s)	687, 717, 767
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	3 cut(s)	366, 508, 691
SfcI	CTRYAG	1 cut(s)	795
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	2 cut(s)	371, 687
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	269, 456, 567
SsiI	CCGC	7 cut(s)	23, 65, 126, 393, 479, 720, 811
SspMI	CTAG	3 cut(s)	78, 192, 749
SstI	GAGCTC	1 cut(s)	819
StyD4I	CCNGG	3 cut(s)	685, 715, 765
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	643
TaqI	TCGA	3 cut(s)	162, 278, 361
TasI	AATT	3 cut(s)	269, 456, 567
TauI	GCSGC	3 cut(s)	395, 723, 813
TfiI	GAWTC	7 cut(s)	7, 16, 42, 164, 298, 321, 363
Tru1I	TTAA	3 cut(s)	207, 252, 272
Tru9I	TTAA	3 cut(s)	207, 252, 272
TscAI	CASTG	2 cut(s)	532, 541
TseFI	GTSAC	2 cut(s)	262, 523
TseI	GCWGC	6 cut(s)	314, 407, 596, 653, 794, 797
Tsp45I	GTSAC	2 cut(s)	262, 523
TspDTI	ATGAA	5 cut(s)	34, 355, 731, 759, 794
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	532, 541
VpaK11BI	GGWCC	1 cut(s)	545
XspI	CTAG	3 cut(s)	78, 192, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.