Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Forward (+)

20082118 .. 20085679

Gene Structure 3562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0113100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGACAGACTGAGCAACTTTCCAGACGAGTTAGTAGACAAAATTTTGTGCATTTTGCCAATTCAGCAGGCTGTGAAGACATGTGTTTTATCAAGCACATGGCGGTATACATCAAATAGTCTTTCACAACTTGTGTTCGATTGGAAGCATAACGGGAATTGGAGCAACCCAGAGTTTGTCGAAATGGTTGATCACGTACTCTCAAATCATGTTGGGCCCATATACAGGTTTAAAATAGAGCGTCGAGAGTTTCTAGACCCAAGTGACATTGATCGATGGATCTTTCATGTATCAAGAAACTCTGTCAAAGAGTTCATACTTGATATCTTCCAAAGGGAATCCTACAAGATCCCTGAATGTTTGTATTCCTGCCAAGATATTACATCTCTCACTTTATGTGGTTGCTTGCTAGATCCGCCTCCTACATTCAGAGGATTCGTGAGCTTGAAGAGAATTGAATTTTATTACGTTTCCCTGGCCCAAGATGTATTTGACAATATGCTTGGTTACTGTCCTTTGCTTGAAGTGTTGATTCTGCAATGCTGTGATGGTTTCACCCATTTCCGTATTAATGCACCAAAACTCCAATATCTTAACTTTGAAGGTTCTTTTGATGATGTTACTCTCAAGAATACCTCAAACCTTACTGATATTACCATTTCTATTGACCTGCCTCGAATTCGAAGGCTCACAATTAAGAATTACTTTTTAAAGTATTTGGCTGTTGAATACCTGCCAAGTGTGCTGCCAAATCCATGTTTACACTTGACTTATCTTTCGGTATCCATAGACTTCACTGTTCTGGAGGAGGTTTCAACTACGCTATGTCTTCTGAGAAGCTGCCCTGCACTACAAGAACTAGAAATTCAAGCAACTAATAATGTTGCACTTGAAGGTCAGGCTATAGTCGGAGATGTCGATTTTGAAAGTGGCAGATGGAGTCACCTATATAACCAACTGCGATGTATTAGGATAAATGAGCAACTGCGACGTCTTAGGATAACTCACATATTTGGTGCCAAAAATGAACTAGATTTCCTTAGATTTCTACTTTTAGTTTCACCTGTGCTTGAATTAGTGACGGTTAGATCAGGTTGGGAGTGTTGTTATCAATTAGTTGACAAGTTGGTTCAGTTCGAGCGTGCCTCAGTTGATGTTGAGATTATCAACTTAGATCCATGTTCCTGGACTGAAACCAATAGGATTTGGATGCATGAACTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

408

Amino Acids

47.51

Weight (kDa)

5.22

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	67 - 220	1.6e-09	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	90 - 221	2.5e-14	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	994
Acc36I	ACCTGC	2 cut(s)	678, 741
AccB1I	GGYRCC	1 cut(s)	1016
AccI	GTMKAC	2 cut(s)	36, 107
AciI	CCGC	2 cut(s)	103, 416
AclWI	GGATC	4 cut(s)	287, 343, 407, 1169
AcsI	RAATTY	4 cut(s)	42, 458, 678, 864
AcyI	GRCGYC	1 cut(s)	991
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	474, 1184
AloI	GAACNNNNNNTCC	2 cut(s)	1020, 1052
AluBI	AGCT	2 cut(s)	444, 840
AluI	AGCT	2 cut(s)	444, 840
AlwI	GGATC	4 cut(s)	287, 343, 407, 1169
AoxI	GGCC	2 cut(s)	215, 477
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	745, 840
ApoI	RAATTY	4 cut(s)	42, 458, 678, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	760, 792
AseI	ATTAAT	1 cut(s)	570
AspS9I	GGNCC	3 cut(s)	215, 216, 478
AsuHPI	GGTGA	3 cut(s)	547, 935, 1053
AsuII	TTCGAA	1 cut(s)	682
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	1016
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	2 cut(s)	83, 821
BbvI	GCAGC	2 cut(s)	732, 827
BccI	CCATC	3 cut(s)	270, 542, 930
BciT130I	CCWGG	2 cut(s)	476, 1186
BciVI	GTATCC	1 cut(s)	793
BclI	TGATCA	1 cut(s)	190
BfaI	CTAG	4 cut(s)	254, 410, 860, 1031
BfmI	CTRYAG	1 cut(s)	903
BfuAI	ACCTGC	2 cut(s)	678, 741
BfuI	GTATCC	1 cut(s)	793
BisI	GCNGC	2 cut(s)	746, 841
BlsI	GCNGC	2 cut(s)	747, 842
Bme1390I	CCNGG	2 cut(s)	476, 1186
BmgT120I	GGNCC	3 cut(s)	215, 216, 478
BmiI	GGNNCC	2 cut(s)	217, 1018
BmrFI	CCNGG	2 cut(s)	476, 1186
BmsI	GCATC	1 cut(s)	1200
BpiI	GAAGAC	2 cut(s)	83, 821
BplI	GAGNNNNNCTC	2 cut(s)	1130, 1162
BpmI	CTGGAG	1 cut(s)	824
Bpu14I	TTCGAA	1 cut(s)	682
BpuEI	CTTGAG	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	991
BsaJI	CCNNGG	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	2 cut(s)	476, 1186
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	1215
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	2 cut(s)	824, 1161
BseRI	GAGGAG	1 cut(s)	821
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	732, 827
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	2 cut(s)	217, 479
BshNI	GGYRCC	1 cut(s)	1016
BshVI	ATCGAT	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	225
BsnI	GGCC	2 cut(s)	217, 479
Bsp119I	TTCGAA	1 cut(s)	682
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
BspACI	CCGC	2 cut(s)	103, 416
BspANI	GGCC	2 cut(s)	217, 479
BspCNI	CTCAG	2 cut(s)	825, 1160
BspDI	ATCGAT	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	217, 1018
BspMI	ACCTGC	2 cut(s)	678, 741
BspPI	GGATC	4 cut(s)	287, 343, 407, 1169
BspT104I	TTCGAA	1 cut(s)	682
BspT107I	GGYRCC	1 cut(s)	1016
BsrDI	GCAATG	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
BssNAI	GTATAC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	991
Bst1107I	GTATAC	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	476, 1186
Bst4CI	ACNGT	3 cut(s)	512, 799, 1084
Bst6I	CTCTTC	1 cut(s)	443
BstACI	GRCGYC	1 cut(s)	991
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	682
BstC8I	GCNNGC	3 cut(s)	69, 407, 1143
BstDEI	CTNAG	6 cut(s)	11, 833, 995, 1040, 1147, 1171
BstF5I	GGATG	1 cut(s)	1215
BstKTI	GATC	7 cut(s)	193, 274, 282, 351, 415, 1091, 1177
BstMBI	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 415, 742
BstNI	CCWGG	2 cut(s)	476, 1186
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	474, 1184
BstSFI	CTRYAG	1 cut(s)	903
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	732, 827
BstV2I	GAAGAC	2 cut(s)	83, 821
BstX2I	RGATCY	4 cut(s)	279, 348, 412, 1174
BstXI	CCANNNNNNTGG	1 cut(s)	1185
BstYI	RGATCY	4 cut(s)	279, 348, 412, 1174
BstZ17I	GTATAC	1 cut(s)	108
Bsu15I	ATCGAT	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	2 cut(s)	217, 479
BsuTUI	ATCGAT	1 cut(s)	274
BtgZI	GCGATG	1 cut(s)	976
BtsCI	GGATG	1 cut(s)	1215
BtsIMutI	CAGTG	1 cut(s)	795
BveI	ACCTGC	2 cut(s)	678, 741
Cac8I	GCNNGC	3 cut(s)	69, 407, 1143
Cfr13I	GGNCC	3 cut(s)	215, 216, 478
ClaI	ATCGAT	1 cut(s)	274
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	7 cut(s)	81, 99, 209, 287, 756, 1179, 1214
CviJI	RGCY	8 cut(s)	71, 217, 444, 479, 688, 722, 840, 902
CviKI_1	RGCY	8 cut(s)	71, 217, 444, 479, 688, 722, 840, 902
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	6 cut(s)	11, 833, 995, 1040, 1147, 1171
DpnI	GATC	7 cut(s)	192, 273, 281, 350, 414, 1090, 1176
DpnII	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
DraI	TTTAAA	2 cut(s)	232, 711
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
EciI	GGCGGA	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	474, 1184
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	1215
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	7 cut(s)	84, 102, 212, 290, 759, 1182, 1217
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FatI	CATG	7 cut(s)	80, 98, 208, 286, 755, 1178, 1213
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	2 cut(s)	36, 107
Fnu4HI	GCNGC	2 cut(s)	746, 841
FokI	GGATG	1 cut(s)	1222
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	746, 841
FspBI	CTAG	4 cut(s)	254, 410, 860, 1031
GluI	GCNGC	2 cut(s)	746, 841
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	2 cut(s)	217, 479
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	991
Hin1II	CATG	7 cut(s)	84, 102, 212, 290, 759, 1182, 1217
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HinfI	GANTC	4 cut(s)	338, 435, 532, 940
HphI	GGTGA	3 cut(s)	547, 935, 1053
Hpy166II	GTNNAC	4 cut(s)	37, 108, 761, 1120
Hpy188I	TCNGA	3 cut(s)	431, 834, 911
Hpy188III	TCNNGA	7 cut(s)	23, 245, 254, 294, 439, 628, 803
Hpy8I	GTNNAC	4 cut(s)	37, 108, 761, 1120
Hpy99I	CGWCG	2 cut(s)	246, 993
HpyAV	CCTTC	3 cut(s)	596, 678, 887
HpyCH4III	ACNGT	3 cut(s)	512, 799, 1084
HpyCH4IV	ACGT	3 cut(s)	195, 468, 991
HpyCH4V	TGCA	6 cut(s)	51, 538, 575, 848, 887, 1213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 415, 742
HpyF3I	CTNAG	6 cut(s)	11, 833, 995, 1040, 1147, 1171
HpySE526I	ACGT	3 cut(s)	195, 468, 991
Hsp92I	GRCGYC	1 cut(s)	991
Hsp92II	CATG	7 cut(s)	84, 102, 212, 290, 759, 1182, 1217
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	2 cut(s)	732, 827
LweI	GCATC	1 cut(s)	1200
MaeI	CTAG	4 cut(s)	254, 410, 860, 1031
MaeII	ACGT	3 cut(s)	195, 468, 991
MaeIII	GTNAC	5 cut(s)	263, 506, 619, 941, 1078
MalI	GATC	7 cut(s)	192, 273, 281, 350, 414, 1090, 1176
MboI	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
MboII	GAAGA	4 cut(s)	88, 319, 460, 821
MflI	RGATCY	4 cut(s)	279, 348, 412, 1174
MhlI	GDGCHC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	949
MmeI	TCCRAC	1 cut(s)	889
MnlI	CCTC	7 cut(s)	425, 429, 646, 684, 799, 802, 1156
Mph1103I	ATGCAT	1 cut(s)	1215
MseI	TTAA	6 cut(s)	231, 570, 594, 696, 710, 1225
MspR9I	CCNGG	2 cut(s)	476, 1186
MvaI	CCWGG	2 cut(s)	476, 1186
MwoI	GCNNNNNNNGC	3 cut(s)	64, 415, 742
NdeII	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
NlaIII	CATG	7 cut(s)	84, 102, 212, 290, 759, 1182, 1217
NlaIV	GGNNCC	2 cut(s)	217, 1018
NmuCI	GTSAC	3 cut(s)	263, 941, 1078
NsiI	ATGCAT	1 cut(s)	1215
NspI	RCATGY	1 cut(s)	84
NspV	TTCGAA	1 cut(s)	682
PciI	ACATGT	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PfeI	GAWTC	3 cut(s)	338, 435, 532
PfoI	TCCNGGA	1 cut(s)	1184
PkrI	GCNGC	2 cut(s)	747, 842
PleI	GAGTC	1 cut(s)	948
PpsI	GAGTC	1 cut(s)	948
Ppu21I	YACGTR	1 cut(s)	196
PscI	ACATGT	1 cut(s)	80
PshBI	ATTAAT	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	474, 1184
PspGI	CCWGG	2 cut(s)	474, 1184
PspN4I	GGNNCC	2 cut(s)	217, 1018
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	215, 216, 478
PsuI	RGATCY	4 cut(s)	279, 348, 412, 1174
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	6 cut(s)	231, 570, 594, 696, 710, 1225
SatI	GCNGC	2 cut(s)	746, 841
Sau3AI	GATC	7 cut(s)	190, 271, 279, 348, 412, 1088, 1174
Sau96I	GGNCC	3 cut(s)	215, 216, 478
SchI	GAGTC	1 cut(s)	949
ScrFI	CCNGG	2 cut(s)	476, 1186
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	1200
SfcI	CTRYAG	1 cut(s)	903
SfuI	TTCGAA	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SsiI	CCGC	2 cut(s)	103, 416
SspMI	CTAG	4 cut(s)	254, 410, 860, 1031
StyD4I	CCNGG	2 cut(s)	474, 1184
TaaI	ACNGT	3 cut(s)	512, 799, 1084
TaiI	ACGT	3 cut(s)	198, 471, 994
TaqI	TCGA	8 cut(s)	138, 180, 244, 274, 676, 682, 918, 1137
TfiI	GAWTC	3 cut(s)	338, 435, 532
Tru1I	TTAA	6 cut(s)	231, 570, 594, 696, 710, 1225
Tru9I	TTAA	6 cut(s)	231, 570, 594, 696, 710, 1225
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	3 cut(s)	263, 941, 1078
TseI	GCWGC	2 cut(s)	745, 840
Tsp45I	GTSAC	3 cut(s)	263, 941, 1078
TspDTI	ATGAA	3 cut(s)	275, 304, 1041
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	802
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	4 cut(s)	42, 458, 678, 864
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	84
XmiI	GTMKAC	2 cut(s)	36, 107
XspI	CTAG	4 cut(s)	254, 410, 860, 1031
ZraI	GACGTC	1 cut(s)	992
Zsp2I	ATGCAT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.