Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Forward (+)

39214517 .. 39217202

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTTGGCTTCATCGGAGCAGGTAAAATGGCGGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCCCCCCAAATCGCATCACTACCTCCCACTCCAGCGCCCTTCGACGCCAAGCCTTTGAGTCCTTCGGCGTCCACCTCCTCCCCCGCAACGACGACGTGGTTGAAGCGAGTGATATCCTCATTTTCTCTGTCAAACCTCAAGTTGTTAAAGATGTAGTCTTGCAACTGAGGCCATTGCTTTCCACAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGTCTCTCTCGCTTTTACCATCCTATTACTCTTATCTGCATTCATTCTCCATTTATGTTATTGGGTGTTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATATGGAAAGCCGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGTGGCAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCGCGAGAACTTGCGTTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCAACTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGAGGAACTACCATTGCTGGCATTCATGAGCTGGAGAAGGGTGGATTTCGTGGAATATTGATGAATGCAGTTGTTGCTGCTGCCAGGCGCAGCCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

274

Amino Acids

28.74

Weight (kDa)

7.85

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	3.7e-17	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	166 - 270	1.4e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 581
AccI	GTMKAC	1 cut(s)	595
AccII	CGCG	1 cut(s)	601
AciI	CCGC	3 cut(s)	65, 187, 599
AclWI	GGATC	1 cut(s)	475
AcyI	GRCGYC	2 cut(s)	148, 171
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	206, 306, 328
AhlI	ACTAGT	1 cut(s)	659
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	4 cut(s)	336, 676, 706, 791
AluBI	AGCT	8 cut(s)	37, 295, 314, 414, 425, 455, 685, 739
AluI	AGCT	8 cut(s)	37, 295, 314, 414, 425, 455, 685, 739
Alw26I	GTCTC	3 cut(s)	20, 346, 438
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	2 cut(s)	272, 520
ApeKI	GCWGC	8 cut(s)	295, 311, 425, 587, 644, 785, 788, 798
AspLEI	GCGC	3 cut(s)	10, 140, 798
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	696
AvaII	GGWCC	1 cut(s)	536
BbvI	GCAGC	8 cut(s)	282, 323, 412, 574, 656, 772, 775, 810
BccI	CCATC	4 cut(s)	23, 365, 434, 569
BciT130I	CCWGG	4 cut(s)	338, 678, 708, 793
BcoDI	GTCTC	3 cut(s)	20, 346, 438
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	3 cut(s)	620, 660, 820
BfmI	CTRYAG	2 cut(s)	558, 588
BfoI	RGCGCY	2 cut(s)	11, 141
BfuAI	ACCTGC	2 cut(s)	44, 581
BglI	GCCNNNNNGGC	1 cut(s)	528
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	8 cut(s)	296, 312, 426, 588, 645, 786, 789, 799
BlsI	GCNGC	8 cut(s)	297, 313, 427, 589, 646, 787, 790, 800
Bme1390I	CCNGG	4 cut(s)	338, 678, 708, 793
Bme18I	GGWCC	1 cut(s)	536
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	536
BmrFI	CCNGG	4 cut(s)	338, 678, 708, 793
BmsI	GCATC	5 cut(s)	81, 126, 499, 632, 682
BpmI	CTGGAG	5 cut(s)	118, 320, 336, 729, 761
BpuEI	CTTGAG	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	148, 171
BsaI	GGTCTC	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	523
Bse3DI	GCAATG	2 cut(s)	275, 720
BseBI	CCWGG	4 cut(s)	338, 678, 708, 793
BseGI	GGATG	3 cut(s)	15, 357, 673
BseMI	GCAATG	2 cut(s)	275, 720
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	4 cut(s)	96, 170, 435, 594
BseXI	GCAGC	8 cut(s)	282, 323, 412, 574, 656, 772, 775, 810
Bsh1236I	CGCG	1 cut(s)	601
BshFI	GGCC	2 cut(s)	274, 522
BsmAI	GTCTC	3 cut(s)	20, 346, 438
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	4 cut(s)	99, 377, 729, 778
BsnI	GGCC	2 cut(s)	274, 522
Bso31I	GGTCTC	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	92, 331, 467
BspACI	CCGC	3 cut(s)	65, 187, 599
BspANI	GGCC	2 cut(s)	274, 522
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	601
BspHI	TCATGA	1 cut(s)	733
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	2 cut(s)	44, 581
BspPI	GGATC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	275, 720
BsrI	ACTGG	1 cut(s)	523
BssMI	GATC	3 cut(s)	92, 331, 467
BssNI	GRCGYC	2 cut(s)	148, 171
Bst2UI	CCWGG	4 cut(s)	338, 678, 708, 793
Bst4CI	ACNGT	1 cut(s)	634
BstACI	GRCGYC	2 cut(s)	148, 171
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	2 cut(s)	269, 524
BstF5I	GGATG	3 cut(s)	15, 357, 673
BstFNI	CGCG	1 cut(s)	601
BstH2I	RGCGCY	2 cut(s)	11, 141
BstHHI	GCGC	3 cut(s)	10, 140, 798
BstKTI	GATC	3 cut(s)	95, 334, 470
BstMAI	GTCTC	3 cut(s)	20, 346, 438
BstMBI	GATC	3 cut(s)	92, 331, 467
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 528, 563, 653, 782
BstNI	CCWGG	4 cut(s)	338, 678, 708, 793
BstSCI	CCNGG	4 cut(s)	336, 676, 706, 791
BstSFI	CTRYAG	2 cut(s)	558, 588
BstUI	CGCG	1 cut(s)	601
BstV1I	GCAGC	8 cut(s)	282, 323, 412, 574, 656, 772, 775, 810
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	274, 522
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	15, 357, 673
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	538
BveI	ACCTGC	2 cut(s)	44, 581
Cac8I	GCNNGC	1 cut(s)	727
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	3 cut(s)	10, 140, 798
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	2 cut(s)	156, 160
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	734
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	269, 524
DpnI	GATC	3 cut(s)	94, 333, 469
DpnII	GATC	3 cut(s)	92, 331, 467
EciI	GGCGGA	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	346
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	536
EcoRII	CCWGG	4 cut(s)	336, 676, 706, 791
EcoRV	GATATC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	737
FaiI	YATR	9 cut(s)	394, 484, 544, 546, 548, 550, 560, 653, 735
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	733
FauI	CCCGC	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	8 cut(s)	296, 312, 426, 588, 645, 786, 789, 799
FokI	GGATG	3 cut(s)	2, 344, 660
Fsp4HI	GCNGC	8 cut(s)	296, 312, 426, 588, 645, 786, 789, 799
FspBI	CTAG	3 cut(s)	620, 660, 820
GlaI	GCGC	3 cut(s)	9, 139, 797
GluI	GCNGC	8 cut(s)	296, 312, 426, 588, 645, 786, 789, 799
GsuI	CTGGAG	5 cut(s)	118, 320, 336, 729, 761
HaeII	RGCGCY	2 cut(s)	11, 141
HaeIII	GGCC	2 cut(s)	274, 522
HgaI	GACGC	2 cut(s)	156, 160
HhaI	GCGC	3 cut(s)	10, 140, 798
Hin1I	GRCGYC	2 cut(s)	148, 171
Hin1II	CATG	1 cut(s)	737
Hin6I	GCGC	3 cut(s)	8, 138, 796
HinP1I	GCGC	3 cut(s)	8, 138, 796
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	84, 161, 318
HphI	GGTGA	1 cut(s)	696
Hpy166II	GTNNAC	2 cut(s)	175, 596
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	2 cut(s)	19, 734
Hpy8I	GTNNAC	2 cut(s)	175, 596
Hpy99I	CGWCG	4 cut(s)	25, 150, 197, 200
HpyAV	CCTTC	3 cut(s)	152, 175, 739
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4IV	ACGT	2 cut(s)	29, 198
HpyCH4V	TGCA	8 cut(s)	265, 311, 377, 428, 512, 542, 590, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 528, 563, 653, 782
HpyF3I	CTNAG	2 cut(s)	269, 524
HpySE526I	ACGT	2 cut(s)	29, 198
Hsp92I	GRCGYC	2 cut(s)	148, 171
Hsp92II	CATG	1 cut(s)	737
HspAI	GCGC	3 cut(s)	8, 138, 796
Kzo9I	GATC	3 cut(s)	92, 331, 467
LmnI	GCTCC	3 cut(s)	50, 422, 641
Lsp1109I	GCAGC	8 cut(s)	282, 323, 412, 574, 656, 772, 775, 810
LweI	GCATC	5 cut(s)	81, 126, 499, 632, 682
MaeI	CTAG	3 cut(s)	620, 660, 820
MaeII	ACGT	2 cut(s)	29, 198
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	3 cut(s)	94, 333, 469
MboI	GATC	3 cut(s)	92, 331, 467
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	5 cut(s)	306, 323, 458, 500, 513
MlyI	GAGTC	3 cut(s)	93, 170, 327
MseI	TTAA	2 cut(s)	249, 449
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	4 cut(s)	338, 678, 708, 793
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	4 cut(s)	99, 377, 729, 778
MvaI	CCWGG	4 cut(s)	338, 678, 708, 793
MvnI	CGCG	1 cut(s)	601
MwoI	GCNNNNNNNGC	5 cut(s)	271, 528, 563, 653, 782
NdeII	GATC	3 cut(s)	92, 331, 467
NlaIII	CATG	1 cut(s)	737
PagI	TCATGA	1 cut(s)	733
PctI	GAATGC	4 cut(s)	99, 377, 729, 778
PkrI	GCNGC	8 cut(s)	297, 313, 427, 589, 646, 787, 790, 800
PleI	GAGTC	3 cut(s)	92, 169, 326
PpsI	GAGTC	3 cut(s)	92, 169, 326
Psp6I	CCWGG	4 cut(s)	336, 676, 706, 791
PspGI	CCWGG	4 cut(s)	336, 676, 706, 791
PspPI	GGNCC	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	249, 449
SatI	GCNGC	8 cut(s)	296, 312, 426, 588, 645, 786, 789, 799
Sau3AI	GATC	3 cut(s)	92, 331, 467
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	3 cut(s)	93, 170, 327
ScrFI	CCNGG	4 cut(s)	338, 678, 708, 793
SfaNI	GCATC	5 cut(s)	81, 126, 499, 632, 682
SfcI	CTRYAG	2 cut(s)	558, 588
SinI	GGWCC	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	5 cut(s)	306, 323, 458, 500, 513
SsiI	CCGC	3 cut(s)	65, 187, 599
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	3 cut(s)	620, 660, 820
StyD4I	CCNGG	4 cut(s)	336, 676, 706, 791
TaaI	ACNGT	1 cut(s)	634
TaiI	ACGT	2 cut(s)	32, 201
TaqI	TCGA	1 cut(s)	145
TasI	AATT	5 cut(s)	306, 323, 458, 500, 513
Tru1I	TTAA	2 cut(s)	249, 449
Tru9I	TTAA	2 cut(s)	249, 449
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	8 cut(s)	295, 311, 425, 587, 644, 785, 788, 798
TspDTI	ATGAA	5 cut(s)	34, 370, 510, 722, 785
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	3 cut(s)	620, 660, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.