Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Reverse (-)

40246739 .. 40249798

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG313600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTTGGGTTCATTGGAGCAGGTAAAATGGCGGAGAGCATCGCCAAAGGAGTCGTCCGATCAGGCATTCTTCCCCCAAATCGCATCACTACCTCCCACTCCAGCCCCATTCGACGTCAAGCCTTCGAGTCCTTCGGCGTCCACCTCCTCCCTCGCAACGACAACGTGGTTGAAGAGAGTGATGTCGTCATTTTCGCTGTCAAACCTCAGGTTGTCAAAGATGTAGTTTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCGGTCACAGCCGATTTATCAGGGTAATGCCTAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATTTGGAAAGCGGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGCGGCAGTGGTCCTGCATATATATATTTGGCTATAGGGGCTTTGGCTGATGGAGGAGTTGCTGCAGGTCTACCGCGAGAACTTGCATTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCATCTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACTACCATTACCGGCATTCATGAGCTGGAGAAGGGTGGATATCGTAGAATATTGATGAATGCAGTTGTTGCTGCTGCCAGGCGCAGTCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

275

Amino Acids

28.81

Weight (kDa)

9.42

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	8e-19	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	168 - 272	4.5e-40	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	151
Acc36I	ACCTGC	2 cut(s)	44, 587
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	607
AciI	CCGC	4 cut(s)	65, 497, 534, 605
AclWI	GGATC	1 cut(s)	481
AcyI	GRCGYC	2 cut(s)	148, 171
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	206, 306, 328
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	4 cut(s)	336, 682, 712, 797
AluBI	AGCT	8 cut(s)	37, 295, 314, 420, 431, 461, 691, 745
AluI	AGCT	8 cut(s)	37, 295, 314, 420, 431, 461, 691, 745
Alw26I	GTCTC	2 cut(s)	20, 444
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	3 cut(s)	272, 345, 526
ApeKI	GCWGC	8 cut(s)	295, 311, 404, 431, 593, 650, 791, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	2 cut(s)	10, 804
AspS9I	GGNCC	2 cut(s)	345, 542
AsuHPI	GGTGA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	542
AxyI	CCTNAGG	1 cut(s)	240
BbvI	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 662, 778, 781
BccI	CCATC	3 cut(s)	23, 440, 575
BciT130I	CCWGG	4 cut(s)	338, 684, 714, 799
BcoDI	GTCTC	2 cut(s)	20, 444
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	3 cut(s)	626, 666, 826
BfmI	CTRYAG	2 cut(s)	564, 594
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	44, 587
BglI	GCCNNNNNGGC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	9 cut(s)	296, 312, 405, 432, 535, 594, 651, 792, 795
BlsI	GCNGC	9 cut(s)	297, 313, 406, 433, 536, 595, 652, 793, 796
Bme1390I	CCNGG	4 cut(s)	338, 684, 714, 799
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	345, 542
BmrFI	CCNGG	4 cut(s)	338, 684, 714, 799
BmsI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
BpmI	CTGGAG	4 cut(s)	118, 320, 336, 767
Bpu10I	CCTNAGC	1 cut(s)	530
BsaHI	GRCGYC	2 cut(s)	148, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	2 cut(s)	347, 731
Bse1I	ACTGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	4 cut(s)	338, 684, 714, 799
BseGI	GGATG	3 cut(s)	15, 505, 679
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	254, 260
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	3 cut(s)	170, 441, 600
BseXI	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 662, 778, 781
Bsh1236I	CGCG	1 cut(s)	607
BshFI	GGCC	3 cut(s)	274, 347, 528
BsiSI	CCGG	2 cut(s)	348, 732
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	20, 444
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	3 cut(s)	99, 735, 784
BsnI	GGCC	3 cut(s)	274, 347, 528
Bsp143I	GATC	3 cut(s)	92, 331, 473
BspACI	CCGC	4 cut(s)	65, 497, 534, 605
BspANI	GGCC	3 cut(s)	274, 347, 528
BspCNI	CTCAG	2 cut(s)	253, 261
BspFNI	CGCG	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	2 cut(s)	44, 587
BspPI	GGATC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	347, 731
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	2 cut(s)	347, 731
BssMI	GATC	3 cut(s)	92, 331, 473
BssNI	GRCGYC	2 cut(s)	148, 171
Bst2UI	CCWGG	4 cut(s)	338, 684, 714, 799
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	2 cut(s)	148, 171
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstDEI	CTNAG	3 cut(s)	240, 269, 530
BstF5I	GGATG	3 cut(s)	15, 505, 679
BstFNI	CGCG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 804
BstKTI	GATC	3 cut(s)	95, 334, 476
BstMAI	GTCTC	2 cut(s)	20, 444
BstMBI	GATC	3 cut(s)	92, 331, 473
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
BstNI	CCWGG	4 cut(s)	338, 684, 714, 799
BstSCI	CCNGG	4 cut(s)	336, 682, 712, 797
BstSFI	CTRYAG	2 cut(s)	564, 594
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 662, 778, 781
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	274, 347, 528
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	15, 505, 679
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	2 cut(s)	44, 587
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	2 cut(s)	10, 804
Cfr10I	RCCGGY	2 cut(s)	347, 731
Cfr13I	GGNCC	2 cut(s)	345, 542
CseI	GACGC	1 cut(s)	160
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	240, 269, 530
DpnI	GATC	3 cut(s)	94, 333, 475
DpnII	GATC	3 cut(s)	92, 331, 473
DraIII	CACNNNGTG	1 cut(s)	716
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	542
Eco81I	CCTNAGG	1 cut(s)	240
EcoRII	CCWGG	4 cut(s)	336, 682, 712, 797
EcoRV	GATATC	1 cut(s)	761
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	743
FaiI	YATR	7 cut(s)	550, 552, 554, 556, 566, 659, 741
FatI	CATG	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 535, 594, 651, 792, 795
FokI	GGATG	3 cut(s)	2, 512, 666
Fsp4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 535, 594, 651, 792, 795
FspBI	CTAG	3 cut(s)	626, 666, 826
GlaI	GCGC	2 cut(s)	9, 803
GluI	GCNGC	9 cut(s)	296, 312, 405, 432, 535, 594, 651, 792, 795
GsuI	CTGGAG	4 cut(s)	118, 320, 336, 767
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	274, 347, 528
HapII	CCGG	2 cut(s)	348, 732
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	2 cut(s)	10, 804
Hin1I	GRCGYC	2 cut(s)	148, 171
Hin1II	CATG	1 cut(s)	743
Hin6I	GCGC	2 cut(s)	8, 802
HinP1I	GCGC	2 cut(s)	8, 802
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	84, 161, 318
HpaII	CCGG	2 cut(s)	348, 732
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	2 cut(s)	175, 602
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	4 cut(s)	19, 285, 740, 809
Hpy8I	GTNNAC	2 cut(s)	175, 602
Hpy99I	CGWCG	2 cut(s)	25, 150
HpyAV	CCTTC	4 cut(s)	166, 175, 396, 745
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	3 cut(s)	29, 148, 198
HpyCH4V	TGCA	9 cut(s)	265, 311, 404, 434, 518, 548, 596, 617, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
HpyF3I	CTNAG	3 cut(s)	240, 269, 530
HpySE526I	ACGT	3 cut(s)	29, 148, 198
Hsp92I	GRCGYC	2 cut(s)	148, 171
Hsp92II	CATG	1 cut(s)	743
HspAI	GCGC	2 cut(s)	8, 802
Kzo9I	GATC	3 cut(s)	92, 331, 473
LmnI	GCTCC	3 cut(s)	50, 428, 647
Lsp1109I	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 662, 778, 781
LweI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	3 cut(s)	626, 666, 826
MaeII	ACGT	3 cut(s)	29, 148, 198
MaeIII	GTNAC	2 cut(s)	350, 703
MalI	GATC	3 cut(s)	94, 333, 475
MboI	GATC	3 cut(s)	92, 331, 473
MboII	GAAGA	2 cut(s)	95, 218
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	5 cut(s)	306, 323, 464, 506, 519
MlyI	GAGTC	3 cut(s)	93, 170, 327
MnlI	CCTC	8 cut(s)	136, 188, 191, 195, 249, 264, 419, 578
MseI	TTAA	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	348, 732
MspR9I	CCNGG	4 cut(s)	338, 684, 714, 799
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	3 cut(s)	99, 735, 784
MvaI	CCWGG	4 cut(s)	338, 684, 714, 799
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
NdeII	GATC	3 cut(s)	92, 331, 473
NlaIII	CATG	1 cut(s)	743
NmuCI	GTSAC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	739
PctI	GAATGC	3 cut(s)	99, 735, 784
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	9 cut(s)	297, 313, 406, 433, 536, 595, 652, 793, 796
PleI	GAGTC	3 cut(s)	92, 169, 326
PpsI	GAGTC	3 cut(s)	92, 169, 326
Psp6I	CCWGG	4 cut(s)	336, 682, 712, 797
PspGI	CCWGG	4 cut(s)	336, 682, 712, 797
PspPI	GGNCC	2 cut(s)	345, 542
PsrI	GAACNNNNNNTAC	2 cut(s)	712, 744
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	9 cut(s)	296, 312, 405, 432, 535, 594, 651, 792, 795
Sau3AI	GATC	3 cut(s)	92, 331, 473
Sau96I	GGNCC	2 cut(s)	345, 542
SchI	GAGTC	3 cut(s)	93, 170, 327
ScrFI	CCNGG	4 cut(s)	338, 684, 714, 799
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
SfcI	CTRYAG	2 cut(s)	564, 594
SinI	GGWCC	1 cut(s)	542
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	5 cut(s)	306, 323, 464, 506, 519
SsiI	CCGC	4 cut(s)	65, 497, 534, 605
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	3 cut(s)	626, 666, 826
StyD4I	CCNGG	4 cut(s)	336, 682, 712, 797
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	3 cut(s)	32, 151, 201
TaqI	TCGA	3 cut(s)	145, 159, 808
TasI	AATT	5 cut(s)	306, 323, 464, 506, 519
TauI	GCSGC	1 cut(s)	537
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	8 cut(s)	295, 311, 404, 431, 593, 650, 791, 794
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	4 cut(s)	34, 516, 728, 791
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	3 cut(s)	626, 666, 826
ZraI	GACGTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.