Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Reverse (-)

29962596 .. 29965662

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTTGGCTTCATCGGAGCAGGTAAAATGGCGGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCCCCCCAAATCGCATCACTACCTCCCACTCCAGCGCCCTTCGACGCCAAGCCTTTGAGTCCTTCGGCGTCCACCTCCTCCCCCGCAACGACGACGTGGTTGAAGCGAGTGATATCCTCATTTTCTCTGTCAAACCTCAAGTTGTTAAAGATGTAGTCTTGCAACTGAGGCCATTGCTTTCCACAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCGGTCACAGCCGATTTATCAGGGTAATGCCCAATACTCCTTCTGCTGTTGGTGTTGCCGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTGATAGGTGAATTATTTGGATCAGTAGGCAAGATATGGAAAGCCGATGAAAAGTTGTTTGATGCAATTACTGGCCTAAGTGGCAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCACGTGAACTTGCATTGGGTCTAGCATCTCAAACGGTAAGTCAAATGACATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

219

Amino Acids

23.01

Weight (kDa)

6.84

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	2.3e-17	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	168 - 215	8.4e-16	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 587
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	3 cut(s)	65, 187, 405
AclWI	GGATC	1 cut(s)	481
AcvI	CACGTG	1 cut(s)	608
AcyI	GRCGYC	2 cut(s)	148, 171
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	206, 306, 328
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	5 cut(s)	37, 295, 314, 420, 431
AluI	AGCT	5 cut(s)	37, 295, 314, 420, 431
Alw26I	GTCTC	2 cut(s)	20, 444
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	3 cut(s)	272, 345, 526
ApeKI	GCWGC	4 cut(s)	295, 311, 431, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AspLEI	GCGC	2 cut(s)	10, 140
AspS9I	GGNCC	2 cut(s)	345, 542
AsuHPI	GGTGA	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	542
BbrPI	CACGTG	1 cut(s)	608
BbvI	GCAGC	4 cut(s)	282, 323, 418, 580
BccI	CCATC	3 cut(s)	23, 440, 575
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	20, 444
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	2 cut(s)	564, 594
BfoI	RGCGCY	2 cut(s)	11, 141
BfuAI	ACCTGC	2 cut(s)	44, 587
BglI	GCCNNNNNGGC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	5 cut(s)	296, 312, 405, 432, 594
BlsI	GCNGC	5 cut(s)	297, 313, 406, 433, 595
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	345, 542
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	5 cut(s)	81, 126, 416, 505, 638
BpmI	CTGGAG	3 cut(s)	118, 320, 336
BpuEI	CTTGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	608
BsaHI	GRCGYC	2 cut(s)	148, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	4 cut(s)	96, 170, 441, 600
BseXI	GCAGC	4 cut(s)	282, 323, 418, 580
BshFI	GGCC	3 cut(s)	274, 347, 528
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	20, 444
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	274, 347, 528
Bsp143I	GATC	3 cut(s)	92, 331, 473
BspACI	CCGC	3 cut(s)	65, 187, 405
BspANI	GGCC	3 cut(s)	274, 347, 528
BspCNI	CTCAG	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	2 cut(s)	44, 587
BspPI	GGATC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	347
BssMI	GATC	3 cut(s)	92, 331, 473
BssNI	GRCGYC	2 cut(s)	148, 171
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	640
BstACI	GRCGYC	2 cut(s)	148, 171
BstBAI	YACGTR	1 cut(s)	608
BstDEI	CTNAG	2 cut(s)	269, 530
BstF5I	GGATG	1 cut(s)	15
BstH2I	RGCGCY	2 cut(s)	11, 141
BstHHI	GCGC	2 cut(s)	10, 140
BstKTI	GATC	3 cut(s)	95, 334, 476
BstMAI	GTCTC	2 cut(s)	20, 444
BstMBI	GATC	3 cut(s)	92, 331, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 534, 569
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	2 cut(s)	564, 594
BstV1I	GCAGC	4 cut(s)	282, 323, 418, 580
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	274, 347, 528
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	2 cut(s)	44, 587
CfoI	GCGC	2 cut(s)	10, 140
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	345, 542
CseI	GACGC	2 cut(s)	156, 160
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	654
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	269, 530
DpnI	GATC	3 cut(s)	94, 333, 475
DpnII	GATC	3 cut(s)	92, 331, 473
EciI	GGCGGA	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	542
Eco72I	CACGTG	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	657
FaiI	YATR	7 cut(s)	490, 550, 552, 554, 556, 566, 655
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	653
FauI	CCCGC	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	5 cut(s)	296, 312, 405, 432, 594
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	5 cut(s)	296, 312, 405, 432, 594
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	2 cut(s)	9, 139
GluI	GCNGC	5 cut(s)	296, 312, 405, 432, 594
GsuI	CTGGAG	3 cut(s)	118, 320, 336
HaeII	RGCGCY	2 cut(s)	11, 141
HaeIII	GGCC	3 cut(s)	274, 347, 528
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	2 cut(s)	156, 160
HhaI	GCGC	2 cut(s)	10, 140
Hin1I	GRCGYC	2 cut(s)	148, 171
Hin1II	CATG	1 cut(s)	657
Hin6I	GCGC	2 cut(s)	8, 138
HinP1I	GCGC	2 cut(s)	8, 138
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	84, 161, 318
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	3 cut(s)	175, 602, 611
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	175, 602, 611
Hpy99I	CGWCG	4 cut(s)	25, 150, 197, 200
HpyAV	CCTTC	3 cut(s)	152, 175, 396
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	3 cut(s)	29, 198, 607
HpyCH4V	TGCA	7 cut(s)	265, 311, 434, 518, 548, 596, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 534, 569
HpyF3I	CTNAG	2 cut(s)	269, 530
HpySE526I	ACGT	3 cut(s)	29, 198, 607
Hsp92I	GRCGYC	2 cut(s)	148, 171
Hsp92II	CATG	1 cut(s)	657
HspAI	GCGC	2 cut(s)	8, 138
Kzo9I	GATC	3 cut(s)	92, 331, 473
LmnI	GCTCC	2 cut(s)	50, 428
Lsp1109I	GCAGC	4 cut(s)	282, 323, 418, 580
LweI	GCATC	5 cut(s)	81, 126, 416, 505, 638
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	3 cut(s)	29, 198, 607
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	94, 333, 475
MboI	GATC	3 cut(s)	92, 331, 473
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	4 cut(s)	306, 323, 464, 519
MlyI	GAGTC	3 cut(s)	93, 170, 327
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	271, 534, 569
NdeII	GATC	3 cut(s)	92, 331, 473
NlaIII	CATG	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	657
PctI	GAATGC	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	5 cut(s)	297, 313, 406, 433, 595
PleI	GAGTC	3 cut(s)	92, 169, 326
PmaCI	CACGTG	1 cut(s)	608
PmlI	CACGTG	1 cut(s)	608
PpsI	GAGTC	3 cut(s)	92, 169, 326
Ppu21I	YACGTR	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	336
PspCI	CACGTG	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	345, 542
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	5 cut(s)	296, 312, 405, 432, 594
Sau3AI	GATC	3 cut(s)	92, 331, 473
Sau96I	GGNCC	2 cut(s)	345, 542
SchI	GAGTC	3 cut(s)	93, 170, 327
ScrFI	CCNGG	1 cut(s)	338
SfaNI	GCATC	5 cut(s)	81, 126, 416, 505, 638
SfcI	CTRYAG	2 cut(s)	564, 594
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	4 cut(s)	306, 323, 464, 519
SsiI	CCGC	3 cut(s)	65, 187, 405
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	3 cut(s)	32, 201, 610
TaqI	TCGA	1 cut(s)	145
TasI	AATT	4 cut(s)	306, 323, 464, 519
TauI	GCSGC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	4 cut(s)	295, 311, 431, 593
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	34, 516
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	542
XceI	RCATGY	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.