Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Reverse (-)

25637017 .. 25639486

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTTGGCTTCATCGGAGCAGGTAAAATGGCGGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCCCCCCAAATCGCATTACTACCTCCCACTCCAGCGCCCTTCGACGCCAAGCCTTTGAGTCCTTCGGCGTCCACCTCCTCCCCGGCAACGACGACGTGGTTGAAGCGAGTGATATCCTCATTTTCTCTGTCAAACCTCAAGTTGTTAAAGATGTAGTCTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCGGTCACAGCCGATTTATCAGGGTAATGCCCAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTGATAGCTGAATTATTTGGATCAGTAGGCAAGATATGGAAAGCCGATGAAAAGTTCTTTGATGCAATTACTGGCCTAAGTGGCAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCACGTGAACTTGCATTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCATCTATGGCTACTAGCTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACTACCATTGCTGGCATTCATGAACTGGAGAAGGGTGGATTTCGTGGAATATTGATGAATGCAGTTGTTGCTGCTGCCAGGCGCAGCCGAGAGCTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

275

Amino Acids

28.66

Weight (kDa)

8.8

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	5.8e-17	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	168 - 272	4.7e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 587
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	481
AcvI	CACGTG	1 cut(s)	608
AcyI	GRCGYC	2 cut(s)	148, 171
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	206, 306, 328
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	4 cut(s)	336, 682, 712, 797
AluBI	AGCT	9 cut(s)	37, 295, 314, 420, 431, 461, 669, 691, 814
AluI	AGCT	9 cut(s)	37, 295, 314, 420, 431, 461, 669, 691, 814
Alw26I	GTCTC	2 cut(s)	20, 444
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	3 cut(s)	272, 345, 526
ApeKI	GCWGC	9 cut(s)	295, 311, 404, 431, 593, 650, 791, 794, 804
AspLEI	GCGC	3 cut(s)	10, 140, 804
AspS9I	GGNCC	2 cut(s)	345, 542
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	542
BbrPI	CACGTG	1 cut(s)	608
BbvI	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
BccI	CCATC	3 cut(s)	23, 440, 575
BciT130I	CCWGG	4 cut(s)	338, 684, 714, 799
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	20, 444
BfaI	CTAG	3 cut(s)	626, 666, 826
BfmI	CTRYAG	2 cut(s)	564, 594
BfoI	RGCGCY	2 cut(s)	11, 141
BfuAI	ACCTGC	2 cut(s)	44, 587
BglI	GCCNNNNNGGC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
BlsI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 652, 793, 796, 806
Bme1390I	CCNGG	5 cut(s)	186, 338, 684, 714, 799
Bme18I	GGWCC	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	345, 542
BmrFI	CCNGG	5 cut(s)	186, 338, 684, 714, 799
BmsI	GCATC	6 cut(s)	81, 416, 505, 638, 662, 688
BpmI	CTGGAG	4 cut(s)	118, 320, 336, 767
BpuEI	CTTGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	608
BsaHI	GRCGYC	2 cut(s)	148, 171
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	529, 750
Bse3DI	GCAATG	2 cut(s)	275, 726
BseBI	CCWGG	4 cut(s)	338, 684, 714, 799
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	15, 679
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	2 cut(s)	275, 726
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	529, 750
BseRI	GAGGAG	4 cut(s)	96, 170, 441, 600
BseXI	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
BshFI	GGCC	3 cut(s)	274, 347, 528
BsiSI	CCGG	2 cut(s)	186, 348
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	20, 444
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	3 cut(s)	99, 735, 784
BsnI	GGCC	3 cut(s)	274, 347, 528
Bsp143I	GATC	3 cut(s)	92, 331, 473
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	3 cut(s)	274, 347, 528
BspCNI	CTCAG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	2 cut(s)	44, 587
BspPI	GGATC	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	275, 726
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	529, 750
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	3 cut(s)	92, 331, 473
BssNI	GRCGYC	2 cut(s)	148, 171
Bst2UI	CCWGG	4 cut(s)	338, 684, 714, 799
Bst4CI	ACNGT	1 cut(s)	640
BstACI	GRCGYC	2 cut(s)	148, 171
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	2 cut(s)	269, 530
BstF5I	GGATG	2 cut(s)	15, 679
BstH2I	RGCGCY	2 cut(s)	11, 141
BstHHI	GCGC	3 cut(s)	10, 140, 804
BstKTI	GATC	3 cut(s)	95, 334, 476
BstMAI	GTCTC	2 cut(s)	20, 444
BstMBI	GATC	3 cut(s)	92, 331, 473
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
BstNI	CCWGG	4 cut(s)	338, 684, 714, 799
BstSCI	CCNGG	5 cut(s)	184, 336, 682, 712, 797
BstSFI	CTRYAG	2 cut(s)	564, 594
BstV1I	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	274, 347, 528
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	15, 679
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	2 cut(s)	44, 587
Cac8I	GCNNGC	1 cut(s)	733
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	3 cut(s)	10, 140, 804
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	345, 542
CseI	GACGC	2 cut(s)	156, 160
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	269, 530
DpnI	GATC	3 cut(s)	94, 333, 475
DpnII	GATC	3 cut(s)	92, 331, 473
DraIII	CACNNNGTG	1 cut(s)	716
EciI	GGCGGA	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	542
Eco72I	CACGTG	1 cut(s)	608
EcoRII	CCWGG	4 cut(s)	336, 682, 712, 797
EcoRV	GATATC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	743
FaiI	YATR	8 cut(s)	490, 550, 552, 554, 556, 566, 659, 741
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
FokI	GGATG	2 cut(s)	2, 666
Fsp4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
FspBI	CTAG	3 cut(s)	626, 666, 826
GlaI	GCGC	3 cut(s)	9, 139, 803
GluI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
GsuI	CTGGAG	4 cut(s)	118, 320, 336, 767
HaeII	RGCGCY	2 cut(s)	11, 141
HaeIII	GGCC	3 cut(s)	274, 347, 528
HapII	CCGG	2 cut(s)	186, 348
HgaI	GACGC	2 cut(s)	156, 160
HhaI	GCGC	3 cut(s)	10, 140, 804
Hin1I	GRCGYC	2 cut(s)	148, 171
Hin1II	CATG	1 cut(s)	743
Hin6I	GCGC	3 cut(s)	8, 138, 802
HinP1I	GCGC	3 cut(s)	8, 138, 802
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	84, 161, 318
HpaII	CCGG	2 cut(s)	186, 348
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	3 cut(s)	175, 602, 611
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	3 cut(s)	19, 285, 740
Hpy8I	GTNNAC	3 cut(s)	175, 602, 611
Hpy99I	CGWCG	4 cut(s)	25, 150, 197, 200
HpyAV	CCTTC	4 cut(s)	152, 175, 396, 745
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	3 cut(s)	29, 198, 607
HpyCH4V	TGCA	9 cut(s)	265, 311, 404, 434, 518, 548, 596, 617, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
HpyF3I	CTNAG	2 cut(s)	269, 530
HpySE526I	ACGT	3 cut(s)	29, 198, 607
Hsp92I	GRCGYC	2 cut(s)	148, 171
Hsp92II	CATG	1 cut(s)	743
HspAI	GCGC	3 cut(s)	8, 138, 802
Kzo9I	GATC	3 cut(s)	92, 331, 473
LmnI	GCTCC	3 cut(s)	50, 428, 647
Lsp1109I	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
LweI	GCATC	6 cut(s)	81, 416, 505, 638, 662, 688
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	3 cut(s)	626, 666, 826
MaeII	ACGT	3 cut(s)	29, 198, 607
MaeIII	GTNAC	2 cut(s)	350, 703
MalI	GATC	3 cut(s)	94, 333, 475
MboI	GATC	3 cut(s)	92, 331, 473
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	4 cut(s)	306, 323, 464, 519
MlyI	GAGTC	3 cut(s)	93, 170, 327
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	186, 348
MspR9I	CCNGG	5 cut(s)	186, 338, 684, 714, 799
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	3 cut(s)	99, 735, 784
MvaI	CCWGG	4 cut(s)	338, 684, 714, 799
MwoI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	92, 331, 473
NlaIII	CATG	1 cut(s)	743
NmuCI	GTSAC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	739
PctI	GAATGC	3 cut(s)	99, 735, 784
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 652, 793, 796, 806
PleI	GAGTC	3 cut(s)	92, 169, 326
PmaCI	CACGTG	1 cut(s)	608
PmlI	CACGTG	1 cut(s)	608
PpsI	GAGTC	3 cut(s)	92, 169, 326
Ppu21I	YACGTR	1 cut(s)	608
Psp6I	CCWGG	4 cut(s)	336, 682, 712, 797
PspCI	CACGTG	1 cut(s)	608
PspGI	CCWGG	4 cut(s)	336, 682, 712, 797
PspPI	GGNCC	2 cut(s)	345, 542
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
Sau3AI	GATC	3 cut(s)	92, 331, 473
Sau96I	GGNCC	2 cut(s)	345, 542
SchI	GAGTC	3 cut(s)	93, 170, 327
ScrFI	CCNGG	5 cut(s)	186, 338, 684, 714, 799
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	6 cut(s)	81, 416, 505, 638, 662, 688
SfcI	CTRYAG	2 cut(s)	564, 594
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	4 cut(s)	306, 323, 464, 519
SsiI	CCGC	1 cut(s)	65
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	3 cut(s)	626, 666, 826
StyD4I	CCNGG	5 cut(s)	184, 336, 682, 712, 797
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	3 cut(s)	32, 201, 610
TaqI	TCGA	1 cut(s)	145
TasI	AATT	4 cut(s)	306, 323, 464, 519
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	9 cut(s)	295, 311, 404, 431, 593, 650, 791, 794, 804
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	5 cut(s)	34, 516, 728, 756, 791
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	3 cut(s)	626, 666, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.