Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Reverse (-)

7547452 .. 7551523

Gene Structure 4072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07410.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGCGGTACCCATCCCGACGGAAACATACAAGCTAGGGTTTATCGGAGCTGGTAAAATGGCCGAGAGCATCGCCAGAGGAATCGTCCAATCGGGCGTTCTCCCTCCCAATCGCATCGCTACCTTCCACCCTGACGCCAGTCGACGCCAAGCCTTCGAGTCCTTCGGAGTCCATCTCCACTCCAAAAACGACGACGTGGTCGAAGAGAGTGACGTCGTCATTTTCTCGGTCAAACCTCAAGTTGTTAAAGATGTAGTTTTGCAGTTGAGGCCGCTGCTTTCCAGGAAGAAGCTGCTTGTTTCAATTGCTGCTGGTGTCAAATTGAAAGATCTGCAGGAATGGGCAGGTCACAACCGATTTATTAGGGTAATGCCAAATACTCCTTCAGCTGTCGGTGCAGCAGCTTCAGTTTTGAGCTTGGGAGGAGGTGCAACAGAACAAGATGGGGACCTCATAGCTAAAGTATTTGGATCAATAGGCAAGACATGGAAAGCTGATGAAAAATACTTTGACGCAGTTACTGGCCTGAGTGGCAGTGGTCCTGCATATATATATTTGGCGATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCTCGAGAACTTGCATTGGGTCTAGCATCTCAAACTGTATTCGGAGCAGCATCTATGGCTTGTCATACTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACTACCATTGCCGGCATTCATGAGCTGGAGAAGGGTGGATTCCGTGGAATATTGATGAATGCGGTCATCGCTGCTGCCAAGCGCAGCCAAGAATTTTCGAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

276

Amino Acids

28.83

Weight (kDa)

8.56

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	219
Acc36I	ACCTGC	2 cut(s)	338, 587
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	2 cut(s)	145, 601
AciI	CCGC	3 cut(s)	8, 275, 782
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	2 cut(s)	372, 393
AcyI	GRCGYC	3 cut(s)	138, 148, 216
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	306, 328
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	3 cut(s)	284, 682, 712
AjuI	GAANNNNNNNTTGG	4 cut(s)	84, 116, 370, 402
AlwI	GGATC	1 cut(s)	481
AlwNI	CAGNNNCTG	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	63, 272, 526
ApoI	RAATTY	1 cut(s)	812
Asp718I	GGTACC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	2 cut(s)	451, 542
AsuHPI	GGTGA	1 cut(s)	702
AsuII	TTCGAA	1 cut(s)	818
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	2 cut(s)	451, 542
BanI	GGYRCC	1 cut(s)	10
BccI	CCATC	4 cut(s)	23, 183, 440, 575
BciT130I	CCWGG	3 cut(s)	286, 684, 714
BfaI	CTAG	3 cut(s)	38, 626, 826
BfmI	CTRYAG	2 cut(s)	335, 594
BfuAI	ACCTGC	2 cut(s)	338, 587
BglI	GCCNNNNNGGC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	331
Bme1390I	CCNGG	3 cut(s)	286, 684, 714
Bme18I	GGWCC	2 cut(s)	451, 542
BmeT110I	CYCGRG	1 cut(s)	606
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	451, 542
BmiI	GGNNCC	2 cut(s)	12, 452
BmrFI	CCNGG	3 cut(s)	286, 684, 714
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	5 cut(s)	81, 126, 638, 662, 688
BmuI	ACTGGG	1 cut(s)	681
BoxI	GACNNNNGTC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpmI	CTGGAG	1 cut(s)	767
Bpu14I	TTCGAA	1 cut(s)	818
BpuEI	CTTGAG	1 cut(s)	225
BsaHI	GRCGYC	3 cut(s)	138, 148, 216
BsaJI	CCNNGG	1 cut(s)	763
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	3 cut(s)	141, 529, 676
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	3 cut(s)	286, 684, 714
BseDI	CCNNGG	1 cut(s)	763
BseGI	GGATG	2 cut(s)	15, 679
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	3 cut(s)	141, 529, 676
BseRI	GAGGAG	2 cut(s)	441, 600
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	3 cut(s)	65, 274, 528
BshNI	GGYRCC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	732
BslFI	GGGAC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	735, 784
BsnI	GGCC	3 cut(s)	65, 274, 528
BsoBI	CYCGRG	1 cut(s)	606
Bsp119I	TTCGAA	1 cut(s)	818
Bsp143I	GATC	2 cut(s)	331, 473
BspACI	CCGC	3 cut(s)	8, 275, 782
BspANI	GGCC	3 cut(s)	65, 274, 528
BspCNI	CTCAG	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	12, 452
BspMAI	CTGCAG	2 cut(s)	339, 598
BspMI	ACCTGC	2 cut(s)	338, 587
BspPI	GGATC	1 cut(s)	481
BspQI	GCTCTTC	1 cut(s)	815
BspT104I	TTCGAA	1 cut(s)	818
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	3 cut(s)	141, 529, 676
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	1 cut(s)	763
BssMI	GATC	2 cut(s)	331, 473
BssNI	GRCGYC	3 cut(s)	138, 148, 216
Bst2UI	CCWGG	3 cut(s)	286, 684, 714
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	2 cut(s)	201, 815
BstACI	GRCGYC	3 cut(s)	138, 148, 216
BstBI	TTCGAA	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	1 cut(s)	530
BstDSI	CCRYGG	1 cut(s)	763
BstF5I	GGATG	2 cut(s)	15, 679
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	2 cut(s)	334, 476
BstMBI	GATC	2 cut(s)	331, 473
BstMWI	GCNNNNNNNGC	6 cut(s)	271, 398, 534, 569, 659, 788
BstNI	CCWGG	3 cut(s)	286, 684, 714
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	284, 682, 712
BstSFI	CTRYAG	2 cut(s)	335, 594
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	65, 274, 528
BtgI	CCRYGG	1 cut(s)	763
BtgZI	GCGATG	3 cut(s)	58, 103, 772
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	15, 679
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	2 cut(s)	338, 587
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	1 cut(s)	804
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	2 cut(s)	451, 542
CseI	GACGC	3 cut(s)	146, 156, 524
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	489, 740
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	2 cut(s)	333, 475
DpnII	GATC	2 cut(s)	331, 473
DraIII	CACNNNGTG	1 cut(s)	716
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	201, 815
EarI	CTCTTC	2 cut(s)	201, 815
Eco47I	GGWCC	2 cut(s)	451, 542
Eco57I	CTGAAG	2 cut(s)	372, 393
Eco88I	CYCGRG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	3 cut(s)	284, 682, 712
FaeI	CATG	2 cut(s)	492, 743
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	488, 739
FblI	GTMKAC	2 cut(s)	145, 601
FokI	GGATG	2 cut(s)	2, 666
FspBI	CTAG	3 cut(s)	38, 626, 826
GlaI	GCGC	1 cut(s)	803
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	3 cut(s)	65, 274, 528
HapII	CCGG	1 cut(s)	732
HgaI	GACGC	3 cut(s)	146, 156, 524
HhaI	GCGC	1 cut(s)	804
Hin1I	GRCGYC	3 cut(s)	138, 148, 216
Hin1II	CATG	2 cut(s)	492, 743
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	4 cut(s)	84, 161, 171, 759
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	2 cut(s)	146, 602
Hpy188I	TCNGA	3 cut(s)	50, 170, 647
Hpy188III	TCNNGA	3 cut(s)	19, 608, 740
Hpy8I	GTNNAC	2 cut(s)	146, 602
Hpy99I	CGWCG	5 cut(s)	25, 150, 197, 200, 221
HpyAV	CCTTC	5 cut(s)	136, 166, 175, 396, 745
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	2 cut(s)	198, 216
HpyCH4V	TGCA	7 cut(s)	265, 337, 401, 434, 548, 596, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	271, 398, 534, 569, 659, 788
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	2 cut(s)	198, 216
Hsp92I	GRCGYC	3 cut(s)	138, 148, 216
Hsp92II	CATG	2 cut(s)	492, 743
HspAI	GCGC	1 cut(s)	802
KpnI	GGTACC	1 cut(s)	14
KroI	GCCGGC	1 cut(s)	731
KroNI	GCCGGC	1 cut(s)	733
Kzo9I	GATC	2 cut(s)	331, 473
LguI	GCTCTTC	1 cut(s)	815
LmnI	GCTCC	2 cut(s)	50, 647
LweI	GCATC	5 cut(s)	81, 126, 638, 662, 688
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	3 cut(s)	38, 626, 826
MaeII	ACGT	2 cut(s)	198, 216
MaeIII	GTNAC	4 cut(s)	212, 350, 520, 703
MalI	GATC	2 cut(s)	333, 475
MboI	GATC	2 cut(s)	331, 473
MboII	GAAGA	2 cut(s)	218, 301
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	3 cut(s)	306, 323, 812
MlyI	GAGTC	2 cut(s)	170, 180
MroNI	GCCGGC	1 cut(s)	731
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	277, 392
MspI	CCGG	1 cut(s)	732
MspR9I	CCNGG	3 cut(s)	286, 684, 714
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	2 cut(s)	735, 784
MvaI	CCWGG	3 cut(s)	286, 684, 714
MwoI	GCNNNNNNNGC	6 cut(s)	271, 398, 534, 569, 659, 788
NaeI	GCCGGC	1 cut(s)	733
NdeII	GATC	2 cut(s)	331, 473
NgoMIV	GCCGGC	1 cut(s)	731
NlaIII	CATG	2 cut(s)	492, 743
NlaIV	GGNNCC	2 cut(s)	12, 452
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	212, 350
NspV	TTCGAA	1 cut(s)	818
PaeR7I	CTCGAG	1 cut(s)	606
PagI	TCATGA	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	2 cut(s)	735, 784
PdiI	GCCGGC	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	84, 759
PflFI	GACNNNGTC	2 cut(s)	200, 218
PfoI	TCCNGGA	1 cut(s)	284
PleI	GAGTC	2 cut(s)	169, 179
PpsI	GAGTC	2 cut(s)	169, 179
PpuMI	RGGWCCY	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	3 cut(s)	284, 682, 712
PspGI	CCWGG	3 cut(s)	284, 682, 712
PspN4I	GGNNCC	2 cut(s)	12, 452
PspPI	GGNCC	2 cut(s)	451, 542
PspPPI	RGGWCCY	1 cut(s)	451
PstI	CTGCAG	2 cut(s)	339, 598
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	2 cut(s)	200, 218
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	815
SaqAI	TTAA	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	331, 473
Sau96I	GGNCC	2 cut(s)	451, 542
SchI	GAGTC	2 cut(s)	170, 180
ScrFI	CCNGG	3 cut(s)	286, 684, 714
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	5 cut(s)	81, 126, 638, 662, 688
SfcI	CTRYAG	2 cut(s)	335, 594
Sfr274I	CTCGAG	1 cut(s)	606
SfuI	TTCGAA	1 cut(s)	818
SinI	GGWCC	2 cut(s)	451, 542
SlaI	CTCGAG	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	240, 606
SmoI	CTYRAG	2 cut(s)	240, 606
Sse9I	AATT	3 cut(s)	306, 323, 812
SsiI	CCGC	3 cut(s)	8, 275, 782
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	3 cut(s)	38, 626, 826
StyD4I	CCNGG	3 cut(s)	284, 682, 712
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	2 cut(s)	201, 219
TaqI	TCGA	5 cut(s)	145, 159, 204, 607, 818
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	306, 323, 812
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	84, 759
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	212, 350
Tsp45I	GTSAC	2 cut(s)	212, 350
TspDTI	ATGAA	3 cut(s)	516, 728, 791
TspGWI	ACGGA	2 cut(s)	38, 752
TspRI	CASTG	1 cut(s)	544
Tth111I	GACNNNGTC	2 cut(s)	200, 218
VpaK11BI	GGWCC	2 cut(s)	451, 542
XapI	RAATTY	1 cut(s)	812
XhoI	CTCGAG	1 cut(s)	606
XmiI	GTMKAC	2 cut(s)	145, 601
XspI	CTAG	3 cut(s)	38, 626, 826
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.