Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Forward (+)

41914941 .. 41918035

Gene Structure 3095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTTGGCTTCATCGGAGCAGGTAAAATGGCTGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCCCCCAAATCGCATCGCTACCTCCCACTCCAGCACCATTCGACGCCAAGCCTTTGAGTCCTTCGGCGTCCACCTCCTCCCCCGCAACGACGACGTTTGGCCCCTTCTCCTCTCATCATCATCATCATCATCATGTGGTTGAAGCGAGTGATATCCTCATTTTCTCTGTCAAACCTCAAGTTGTTAAAGATGTAATCTTGCAACTGAGGCCATTGCTTTCCACAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCGGTCACAGCCGATTTATCAGGGTAATGCCTAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACTGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATATGGAAAGCCGATGAAAAGTTGTTTGATGCAATTACTGGCCTAAGTGGCAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCACGAGAACTTGCATTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCATCTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACTACCATTGCTGGCATTCATGAACTGGAGAAGGGTGGATTTCGTGGAATATTGATGAATGCAGTTGTTGCTGCTGCCAGGCGCAGCCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

288

Amino Acids

29.78

Weight (kDa)

8.01

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 119	1.8e-11	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	181 - 285	1.6e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 626
AccI	GTMKAC	1 cut(s)	640
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	520
AcyI	GRCGYC	2 cut(s)	147, 170
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	245, 345, 367
AhlI	ACTAGT	1 cut(s)	704
AjnI	CCWGG	4 cut(s)	375, 721, 751, 836
AluBI	AGCT	7 cut(s)	37, 334, 353, 459, 470, 500, 730
AluI	AGCT	7 cut(s)	37, 334, 353, 459, 470, 500, 730
Alw26I	GTCTC	2 cut(s)	20, 483
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	4 cut(s)	202, 311, 384, 565
ApeKI	GCWGC	9 cut(s)	334, 350, 443, 470, 632, 689, 830, 833, 843
AspLEI	GCGC	2 cut(s)	10, 843
AspS9I	GGNCC	3 cut(s)	203, 384, 581
AsuHPI	GGTGA	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	581
BauI	CACGAG	1 cut(s)	645
BbvI	GCAGC	9 cut(s)	321, 362, 455, 457, 619, 701, 817, 820, 855
BccI	CCATC	3 cut(s)	23, 479, 614
BciT130I	CCWGG	4 cut(s)	377, 723, 753, 838
BcoDI	GTCTC	2 cut(s)	20, 483
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	3 cut(s)	665, 705, 865
BfmI	CTRYAG	2 cut(s)	603, 633
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	44, 626
BglI	GCCNNNNNGGC	1 cut(s)	573
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	9 cut(s)	335, 351, 444, 471, 633, 690, 831, 834, 844
BlsI	GCNGC	9 cut(s)	336, 352, 445, 472, 634, 691, 832, 835, 845
Bme1390I	CCNGG	4 cut(s)	377, 723, 753, 838
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	3 cut(s)	203, 384, 581
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	4 cut(s)	377, 723, 753, 838
BmsI	GCATC	7 cut(s)	81, 125, 455, 544, 677, 701, 727
BpmI	CTGGAG	4 cut(s)	117, 359, 375, 806
BpuEI	CTTGAG	1 cut(s)	264
BsaHI	GRCGYC	2 cut(s)	147, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	568, 789
Bse3DI	GCAATG	2 cut(s)	314, 765
BseBI	CCWGG	4 cut(s)	377, 723, 753, 838
BseGI	GGATG	2 cut(s)	15, 718
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	2 cut(s)	314, 765
BseMII	CTCAG	2 cut(s)	57, 299
BseNI	ACTGG	2 cut(s)	568, 789
BseRI	GAGGAG	5 cut(s)	96, 169, 202, 480, 639
BseXI	GCAGC	9 cut(s)	321, 362, 455, 457, 619, 701, 817, 820, 855
BshFI	GGCC	4 cut(s)	204, 313, 386, 567
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	20, 483
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	3 cut(s)	99, 774, 823
BsnI	GGCC	4 cut(s)	204, 313, 386, 567
Bsp143I	GATC	3 cut(s)	92, 370, 512
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	4 cut(s)	204, 313, 386, 567
BspCNI	CTCAG	2 cut(s)	58, 300
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	2 cut(s)	44, 626
BspPI	GGATC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	314, 765
BsrFI	RCCGGY	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	568, 789
BssAI	RCCGGY	1 cut(s)	386
BssMI	GATC	3 cut(s)	92, 370, 512
BssNI	GRCGYC	2 cut(s)	147, 170
BssSI	CACGAG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	4 cut(s)	377, 723, 753, 838
Bst4CI	ACNGT	1 cut(s)	679
BstACI	GRCGYC	2 cut(s)	147, 170
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	3 cut(s)	66, 308, 569
BstF5I	GGATG	2 cut(s)	15, 718
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 843
BstKTI	GATC	3 cut(s)	95, 373, 515
BstMAI	GTCTC	2 cut(s)	20, 483
BstMBI	GATC	3 cut(s)	92, 370, 512
BstMWI	GCNNNNNNNGC	5 cut(s)	310, 573, 608, 698, 827
BstNI	CCWGG	4 cut(s)	377, 723, 753, 838
BstSCI	CCNGG	4 cut(s)	375, 721, 751, 836
BstSFI	CTRYAG	2 cut(s)	603, 633
BstV1I	GCAGC	9 cut(s)	321, 362, 455, 457, 619, 701, 817, 820, 855
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	4 cut(s)	204, 313, 386, 567
BtgZI	GCGATG	2 cut(s)	58, 102
BtsCI	GGATG	2 cut(s)	15, 718
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	583
BveI	ACCTGC	2 cut(s)	44, 626
Cac8I	GCNNGC	1 cut(s)	772
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	2 cut(s)	10, 843
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	3 cut(s)	203, 384, 581
CseI	GACGC	2 cut(s)	155, 159
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	236, 779
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	66, 308, 569
DpnI	GATC	3 cut(s)	94, 372, 514
DpnII	GATC	3 cut(s)	92, 370, 512
DraIII	CACNNNGTG	1 cut(s)	755
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	581
EcoRII	CCWGG	4 cut(s)	375, 721, 751, 836
EcoRV	GATATC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	239, 782
FaiI	YATR	9 cut(s)	237, 529, 589, 591, 593, 595, 605, 698, 780
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	2 cut(s)	235, 778
FauI	CCCGC	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	9 cut(s)	335, 351, 444, 471, 633, 690, 831, 834, 844
FokI	GGATG	2 cut(s)	2, 705
Fsp4HI	GCNGC	9 cut(s)	335, 351, 444, 471, 633, 690, 831, 834, 844
FspBI	CTAG	3 cut(s)	665, 705, 865
GlaI	GCGC	2 cut(s)	9, 842
GluI	GCNGC	9 cut(s)	335, 351, 444, 471, 633, 690, 831, 834, 844
GsuI	CTGGAG	4 cut(s)	117, 359, 375, 806
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	204, 313, 386, 567
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	2 cut(s)	155, 159
HhaI	GCGC	2 cut(s)	10, 843
Hin1I	GRCGYC	2 cut(s)	147, 170
Hin1II	CATG	2 cut(s)	239, 782
Hin6I	GCGC	2 cut(s)	8, 841
HinP1I	GCGC	2 cut(s)	8, 841
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	84, 160, 357
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	741
Hpy166II	GTNNAC	2 cut(s)	174, 641
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	2 cut(s)	19, 779
Hpy8I	GTNNAC	2 cut(s)	174, 641
Hpy99I	CGWCG	4 cut(s)	25, 149, 196, 199
HpyAV	CCTTC	4 cut(s)	174, 217, 435, 784
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	2 cut(s)	29, 197
HpyCH4V	TGCA	9 cut(s)	304, 350, 443, 473, 557, 587, 635, 656, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	310, 573, 608, 698, 827
HpyF3I	CTNAG	3 cut(s)	66, 308, 569
HpySE526I	ACGT	2 cut(s)	29, 197
Hsp92I	GRCGYC	2 cut(s)	147, 170
Hsp92II	CATG	2 cut(s)	239, 782
HspAI	GCGC	2 cut(s)	8, 841
Kzo9I	GATC	3 cut(s)	92, 370, 512
LmnI	GCTCC	3 cut(s)	50, 467, 686
Lsp1109I	GCAGC	9 cut(s)	321, 362, 455, 457, 619, 701, 817, 820, 855
LweI	GCATC	7 cut(s)	81, 125, 455, 544, 677, 701, 727
MabI	ACCWGGT	1 cut(s)	751
MaeI	CTAG	3 cut(s)	665, 705, 865
MaeII	ACGT	2 cut(s)	29, 197
MaeIII	GTNAC	2 cut(s)	389, 742
MalI	GATC	3 cut(s)	94, 372, 514
MboI	GATC	3 cut(s)	92, 370, 512
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	4 cut(s)	345, 362, 503, 558
MlyI	GAGTC	3 cut(s)	93, 169, 366
MseI	TTAA	2 cut(s)	288, 494
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	4 cut(s)	377, 723, 753, 838
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	3 cut(s)	99, 774, 823
MvaI	CCWGG	4 cut(s)	377, 723, 753, 838
MwoI	GCNNNNNNNGC	5 cut(s)	310, 573, 608, 698, 827
NdeII	GATC	3 cut(s)	92, 370, 512
NlaIII	CATG	2 cut(s)	239, 782
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	778
PctI	GAATGC	3 cut(s)	99, 774, 823
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	9 cut(s)	336, 352, 445, 472, 634, 691, 832, 835, 845
PleI	GAGTC	3 cut(s)	92, 168, 365
PpsI	GAGTC	3 cut(s)	92, 168, 365
Psp6I	CCWGG	4 cut(s)	375, 721, 751, 836
PspGI	CCWGG	4 cut(s)	375, 721, 751, 836
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	3 cut(s)	203, 384, 581
PstI	CTGCAG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	288, 494
SatI	GCNGC	9 cut(s)	335, 351, 444, 471, 633, 690, 831, 834, 844
Sau3AI	GATC	3 cut(s)	92, 370, 512
Sau96I	GGNCC	3 cut(s)	203, 384, 581
SchI	GAGTC	3 cut(s)	93, 169, 366
ScrFI	CCNGG	4 cut(s)	377, 723, 753, 838
SexAI	ACCWGGT	1 cut(s)	751
SfaNI	GCATC	7 cut(s)	81, 125, 455, 544, 677, 701, 727
SfcI	CTRYAG	2 cut(s)	603, 633
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
SpeI	ACTAGT	1 cut(s)	704
Sse9I	AATT	4 cut(s)	345, 362, 503, 558
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	3 cut(s)	665, 705, 865
StyD4I	CCNGG	4 cut(s)	375, 721, 751, 836
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	2 cut(s)	32, 200
TaqI	TCGA	1 cut(s)	144
TasI	AATT	4 cut(s)	345, 362, 503, 558
Tru1I	TTAA	2 cut(s)	288, 494
Tru9I	TTAA	2 cut(s)	288, 494
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	9 cut(s)	334, 350, 443, 470, 632, 689, 830, 833, 843
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	5 cut(s)	34, 555, 767, 795, 830
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	3 cut(s)	665, 705, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.