Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Reverse (-)

37846539 .. 37849623

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGGCGCTACCCATCCCGACGGAGACCTACAAGCTTGGGTTCATCGGAGCAGGTAAAATGGCGGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCGCCCCAAATCGCATCACTACCTCCCACTCCAGCCCCATTCGACGCCAAGCCTTCGAGTCCTTTGGCGTCCACCTCCTCCCTCGCAACGACGACGTGGTTGAAGAGAGTGATGTCGTCATTTTCGCGGTCAAACCTCAAGTTGTCAAAGATGTAGTTTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGCGCCGGTCACAGCCGATTTATCAGGGTAATGCCTAATACTCCCTCTGCTGTTGGTGTTGCAGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATTTGGGAAGCTGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGGTATTGGTCCTGCATATATATATATTTGGTTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACTGCGAGAACTTGCATTGGCCGGGTCTAGCATCTCAAACTCTCTGATTGTTTATATTGTCTTTTATTTATTTATTTTGGTATTAGGAGCAGCATCTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACTACCATTACCGGCATTCATGAGCTGGAGAAGGGTGGATTTCGTGGAATATTGATGAATGCAGTTGTTGCTGCTGCCAGGCGCAGCCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

289

Amino Acids

30.73

Weight (kDa)

7.78

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	3.1e-19	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	228 - 286	8.1e-19	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 587
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	230
AciI	CCGC	2 cut(s)	65, 230
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	621
AcyI	GRCGYC	2 cut(s)	148, 171
AdeI	CACNNNGTG	1 cut(s)	758
AgsI	TTSAA	3 cut(s)	206, 306, 328
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	4 cut(s)	336, 724, 754, 839
AluBI	AGCT	9 cut(s)	37, 295, 314, 420, 431, 461, 497, 733, 787
AluI	AGCT	9 cut(s)	37, 295, 314, 420, 431, 461, 497, 733, 787
Alw26I	GTCTC	2 cut(s)	20, 444
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	3 cut(s)	272, 526, 621
ApeKI	GCWGC	9 cut(s)	295, 311, 404, 431, 593, 692, 833, 836, 846
AspLEI	GCGC	3 cut(s)	10, 347, 846
AspS9I	GGNCC	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	744
AvaII	GGWCC	1 cut(s)	540
AxyI	CCTNAGG	1 cut(s)	530
BbvI	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 704, 820, 823, 858
BccI	CCATC	3 cut(s)	23, 440, 575
BciT130I	CCWGG	4 cut(s)	338, 726, 756, 841
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	20, 444
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	3 cut(s)	630, 708, 868
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	44, 587
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 693, 834, 837, 847
BlsI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 694, 835, 838, 848
Bme1390I	CCNGG	5 cut(s)	338, 625, 726, 756, 841
Bme18I	GGWCC	1 cut(s)	540
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	540
BmrFI	CCNGG	5 cut(s)	338, 625, 726, 756, 841
BmsI	GCATC	7 cut(s)	81, 126, 416, 505, 642, 704, 730
BpmI	CTGGAG	4 cut(s)	118, 320, 336, 809
BpuEI	CTTGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	625
BsaHI	GRCGYC	2 cut(s)	148, 171
BsaI	GGTCTC	1 cut(s)	20
Bse118I	RCCGGY	2 cut(s)	347, 773
Bse1I	ACTGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	4 cut(s)	338, 726, 756, 841
BseGI	GGATG	2 cut(s)	15, 721
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	4 cut(s)	96, 170, 441, 600
BseXI	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 704, 820, 823, 858
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	274, 528, 623
BsiSI	CCGG	3 cut(s)	348, 624, 774
BsmAI	GTCTC	2 cut(s)	20, 444
BsmI	GAATGC	3 cut(s)	99, 777, 826
BsnI	GGCC	3 cut(s)	274, 528, 623
Bso31I	GGTCTC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	92, 331, 473
BspACI	CCGC	2 cut(s)	65, 230
BspANI	GGCC	3 cut(s)	274, 528, 623
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	781
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	2 cut(s)	44, 587
BspPI	GGATC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	347, 773
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	2 cut(s)	347, 773
BssMI	GATC	3 cut(s)	92, 331, 473
BssNI	GRCGYC	2 cut(s)	148, 171
Bst2UI	CCWGG	4 cut(s)	338, 726, 756, 841
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	2 cut(s)	148, 171
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstDEI	CTNAG	2 cut(s)	269, 530
BstF5I	GGATG	2 cut(s)	15, 721
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 347, 846
BstKTI	GATC	3 cut(s)	95, 334, 476
BstMAI	GTCTC	2 cut(s)	20, 444
BstMBI	GATC	3 cut(s)	92, 331, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 701, 830
BstNI	CCWGG	4 cut(s)	338, 726, 756, 841
BstSCI	CCNGG	5 cut(s)	336, 623, 724, 754, 839
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 704, 820, 823, 858
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	274, 528, 623
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	15, 721
BveI	ACCTGC	2 cut(s)	44, 587
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	3 cut(s)	10, 347, 846
Cfr10I	RCCGGY	2 cut(s)	347, 773
Cfr13I	GGNCC	1 cut(s)	540
CseI	GACGC	2 cut(s)	156, 160
CsiI	ACCWGGT	1 cut(s)	754
CviAII	CATG	1 cut(s)	782
DdeI	CTNAG	2 cut(s)	269, 530
DpnI	GATC	3 cut(s)	94, 333, 475
DpnII	GATC	3 cut(s)	92, 331, 473
DraIII	CACNNNGTG	1 cut(s)	758
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	540
Eco81I	CCTNAGG	1 cut(s)	530
EcoRII	CCWGG	4 cut(s)	336, 724, 754, 839
FaeI	CATG	1 cut(s)	785
FaiI	YATR	9 cut(s)	548, 550, 552, 554, 556, 566, 657, 701, 783
FatI	CATG	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 693, 834, 837, 847
FokI	GGATG	2 cut(s)	2, 708
Fsp4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 693, 834, 837, 847
FspBI	CTAG	3 cut(s)	630, 708, 868
GlaI	GCGC	3 cut(s)	9, 346, 845
GluI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 693, 834, 837, 847
GsuI	CTGGAG	4 cut(s)	118, 320, 336, 809
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	274, 528, 623
HapII	CCGG	3 cut(s)	348, 624, 774
HgaI	GACGC	2 cut(s)	156, 160
HhaI	GCGC	3 cut(s)	10, 347, 846
Hin1I	GRCGYC	2 cut(s)	148, 171
Hin1II	CATG	1 cut(s)	785
Hin6I	GCGC	3 cut(s)	8, 345, 844
HinP1I	GCGC	3 cut(s)	8, 345, 844
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	84, 161, 318
HpaII	CCGG	3 cut(s)	348, 624, 774
HphI	GGTGA	1 cut(s)	744
Hpy166II	GTNNAC	2 cut(s)	175, 602
Hpy188I	TCNGA	3 cut(s)	50, 92, 648
Hpy188III	TCNNGA	3 cut(s)	19, 285, 782
Hpy8I	GTNNAC	2 cut(s)	175, 602
Hpy99I	CGWCG	4 cut(s)	25, 150, 197, 200
HpyAV	CCTTC	2 cut(s)	166, 787
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	9 cut(s)	265, 311, 404, 434, 518, 546, 596, 617, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 701, 830
HpyF3I	CTNAG	2 cut(s)	269, 530
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	2 cut(s)	148, 171
Hsp92II	CATG	1 cut(s)	785
HspAI	GCGC	3 cut(s)	8, 345, 844
Kzo9I	GATC	3 cut(s)	92, 331, 473
LmnI	GCTCC	3 cut(s)	50, 428, 689
Lsp1109I	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 704, 820, 823, 858
LweI	GCATC	7 cut(s)	81, 126, 416, 505, 642, 704, 730
MabI	ACCWGGT	1 cut(s)	754
MaeI	CTAG	3 cut(s)	630, 708, 868
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	350, 745
MalI	GATC	3 cut(s)	94, 333, 475
MboI	GATC	3 cut(s)	92, 331, 473
MboII	GAAGA	1 cut(s)	218
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	5 cut(s)	306, 323, 464, 506, 519
MlyI	GAGTC	3 cut(s)	93, 170, 327
MseI	TTAA	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	348, 624, 774
MspR9I	CCNGG	5 cut(s)	338, 625, 726, 756, 841
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	3 cut(s)	99, 777, 826
MvaI	CCWGG	4 cut(s)	338, 726, 756, 841
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	271, 701, 830
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	3 cut(s)	92, 331, 473
NlaIII	CATG	1 cut(s)	785
NmuCI	GTSAC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	781
PctI	GAATGC	3 cut(s)	99, 777, 826
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 694, 835, 838, 848
PleI	GAGTC	3 cut(s)	92, 169, 326
PpsI	GAGTC	3 cut(s)	92, 169, 326
Psp6I	CCWGG	4 cut(s)	336, 724, 754, 839
PspGI	CCWGG	4 cut(s)	336, 724, 754, 839
PspPI	GGNCC	1 cut(s)	540
PsrI	GAACNNNNNNTAC	2 cut(s)	754, 786
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 693, 834, 837, 847
Sau3AI	GATC	3 cut(s)	92, 331, 473
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	3 cut(s)	93, 170, 327
ScrFI	CCNGG	5 cut(s)	338, 625, 726, 756, 841
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	7 cut(s)	81, 126, 416, 505, 642, 704, 730
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	5 cut(s)	306, 323, 464, 506, 519
SsiI	CCGC	2 cut(s)	65, 230
SspI	AATATT	1 cut(s)	813
SspMI	CTAG	3 cut(s)	630, 708, 868
StyD4I	CCNGG	5 cut(s)	336, 623, 724, 754, 839
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	145, 159
TasI	AATT	5 cut(s)	306, 323, 464, 506, 519
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	9 cut(s)	295, 311, 404, 431, 593, 692, 833, 836, 846
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	4 cut(s)	34, 516, 770, 833
TspGWI	ACGGA	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	3 cut(s)	630, 708, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.