Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007844

Physical Location & Seq

Genomic Coordinates Reverse (-)

19072823 .. 19077119

Gene Structure 4297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25150.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTCGGGTTCATCGGAGCTGGTAAAATGGCGGAGAGCATCGCCAGAGGAGTGGTCGGATCAGGCATTCTCCCCGCAAATCGCATCACTACCTCACACTCCAGCCCCTCTCGACGCCAAGCCTTCGAGTCCTTTGGCGTCCACCTCCTCCCTCGCAACGACGACGTTGTTGAAGAGAGTGATGTCGTCATTTTCTCTGTCAAACCTCAAGTTGTTAAAGATGTAGTTCTGCAACTGAGGCCGTTGCTTTCCAGAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAGTTGAAAGATCTTCAGGATTGGGCTGGTCATAGTCGATTTATCAGGGTAATGCCCAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATTTGGAAAGCTGATGAAAAGTTGTTTGATGCAATTACTGGCCTGAGTGGCAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTGCCACGAGAACTTGCATTGGGTCTAGCATCTCAAACTGTATTGGGAGCTGCATCTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGACGATGTAACGTCACCTGGTGGAACTACCATTGTTGGCATTCATGAGCTGGAAAAGGGTGGATTTCGTGGAATATTGATGAATGCAGTCGTCGCCGCTGCCAAGCGCAGCCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

276

Amino Acids

28.63

Weight (kDa)

7.95

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	9.5e-19	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	168 - 272	7.1e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14800 AT5G14800
fragaria_vesca	FvH4_6g25150 FvH4_6g25150
malus_domestica	MD12G1094200.v1.1 MD14G1084400.v1.1
prunus_persica	Prupe.7G045500_v2.0.a1
pyrus_communis	pycom12g07740 pycom14g07410
rosa_chinensis	RchiOBHm_Chr1g0334171
rosa_laevigata	RLG00000018843 RLG00000029473
rosa_multiflora	Rmu_sc0008928.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118320 Rroxscaffold_4G00316950
rosa_rugosa	Rorug01G0113100 Rorug02G0255000
rosa_samantha	Rh1AG137200 Rh1BG104500 Rh1CG129400 Rh1DG142200 Rh2AG313600
rosa_wichuraiana	Rw1G011400 Rw2G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	587
AciI	CCGC	3 cut(s)	65, 108, 792
AclWI	GGATC	2 cut(s)	100, 481
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	2 cut(s)	148, 171
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	206, 306, 328
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	2 cut(s)	682, 712
Alw26I	GTCTC	2 cut(s)	20, 444
AlwI	GGATC	2 cut(s)	100, 481
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	272, 526
ApeKI	GCWGC	8 cut(s)	295, 311, 404, 431, 593, 650, 794, 804
AspLEI	GCGC	2 cut(s)	10, 804
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	702
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	542
BauI	CACGAG	1 cut(s)	606
BbvI	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 637, 781, 816
BccI	CCATC	3 cut(s)	23, 440, 575
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	684, 714
BcoDI	GTCTC	2 cut(s)	20, 444
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	3 cut(s)	626, 666, 826
BfmI	CTRYAG	2 cut(s)	564, 594
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	587
BglI	GCCNNNNNGGC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
BlsI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 652, 793, 796, 806
Bme1390I	CCNGG	2 cut(s)	684, 714
Bme18I	GGWCC	1 cut(s)	542
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	542
BmrFI	CCNGG	2 cut(s)	684, 714
BmsI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
BpmI	CTGGAG	2 cut(s)	118, 336
BpuEI	CTTGAG	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	148, 171
Bse1I	ACTGG	1 cut(s)	529
BseBI	CCWGG	2 cut(s)	684, 714
BseGI	GGATG	2 cut(s)	15, 679
BseMII	CTCAG	2 cut(s)	260, 521
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	4 cut(s)	96, 170, 441, 600
BseXI	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 637, 781, 816
BshFI	GGCC	2 cut(s)	274, 528
BsiHKCI	CYCGRG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	20, 444
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	3 cut(s)	99, 735, 784
BsnI	GGCC	2 cut(s)	274, 528
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	92, 331, 473
BspACI	CCGC	3 cut(s)	65, 108, 792
BspANI	GGCC	2 cut(s)	274, 528
BspCNI	CTCAG	2 cut(s)	261, 522
BspHI	TCATGA	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	2 cut(s)	100, 481
BsrI	ACTGG	1 cut(s)	529
BssMI	GATC	3 cut(s)	92, 331, 473
BssNI	GRCGYC	2 cut(s)	148, 171
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	684, 714
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	2 cut(s)	148, 171
BstDEI	CTNAG	2 cut(s)	269, 530
BstF5I	GGATG	2 cut(s)	15, 679
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 804
BstKTI	GATC	3 cut(s)	95, 334, 476
BstMAI	GTCTC	2 cut(s)	20, 444
BstMBI	GATC	3 cut(s)	92, 331, 473
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
BstNI	CCWGG	2 cut(s)	684, 714
BstSCI	CCNGG	2 cut(s)	682, 712
BstSFI	CTRYAG	2 cut(s)	564, 594
BstV1I	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 637, 781, 816
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	274, 528
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	15, 679
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	587
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	2 cut(s)	10, 804
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	2 cut(s)	156, 160
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	269, 530
DpnI	GATC	3 cut(s)	94, 333, 475
DpnII	GATC	3 cut(s)	92, 331, 473
DraIII	CACNNNGTG	1 cut(s)	716
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	682, 712
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	743
FaiI	YATR	8 cut(s)	354, 550, 552, 554, 556, 566, 659, 741
FatI	CATG	1 cut(s)	739
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
FokI	GGATG	2 cut(s)	2, 666
Fsp4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
FspBI	CTAG	3 cut(s)	626, 666, 826
GlaI	GCGC	2 cut(s)	9, 803
GluI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
GsuI	CTGGAG	2 cut(s)	118, 336
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	274, 528
HgaI	GACGC	2 cut(s)	156, 160
HhaI	GCGC	2 cut(s)	10, 804
Hin1I	GRCGYC	2 cut(s)	148, 171
Hin1II	CATG	1 cut(s)	743
Hin6I	GCGC	2 cut(s)	8, 802
HinP1I	GCGC	2 cut(s)	8, 802
HinfI	GANTC	2 cut(s)	161, 318
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	5 cut(s)	19, 144, 285, 338, 740
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	5 cut(s)	25, 150, 197, 200, 791
HpyAV	CCTTC	2 cut(s)	166, 396
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	3 cut(s)	29, 198, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
HpyF3I	CTNAG	2 cut(s)	269, 530
HpySE526I	ACGT	3 cut(s)	29, 198, 707
Hsp92I	GRCGYC	2 cut(s)	148, 171
Hsp92II	CATG	1 cut(s)	743
HspAI	GCGC	2 cut(s)	8, 802
Kzo9I	GATC	3 cut(s)	92, 331, 473
LmnI	GCTCC	3 cut(s)	50, 428, 647
Lsp1109I	GCAGC	8 cut(s)	282, 323, 416, 418, 580, 637, 781, 816
LweI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	3 cut(s)	626, 666, 826
MaeII	ACGT	3 cut(s)	29, 198, 707
MaeIII	GTNAC	2 cut(s)	703, 708
MalI	GATC	3 cut(s)	94, 333, 475
MboI	GATC	3 cut(s)	92, 331, 473
MboII	GAAGA	2 cut(s)	218, 326
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	3 cut(s)	306, 464, 519
MlyI	GAGTC	2 cut(s)	170, 327
MmeI	TCCRAC	1 cut(s)	70
MseI	TTAA	2 cut(s)	249, 455
MspA1I	CMGCKG	2 cut(s)	314, 794
MspR9I	CCNGG	2 cut(s)	684, 714
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	3 cut(s)	99, 735, 784
MvaI	CCWGG	2 cut(s)	684, 714
MwoI	GCNNNNNNNGC	5 cut(s)	271, 534, 569, 659, 788
NdeII	GATC	3 cut(s)	92, 331, 473
NlaIII	CATG	1 cut(s)	743
NmuCI	GTSAC	1 cut(s)	708
PagI	TCATGA	1 cut(s)	739
PctI	GAATGC	3 cut(s)	99, 735, 784
PkrI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 652, 793, 796, 806
PleI	GAGTC	2 cut(s)	169, 326
PpsI	GAGTC	2 cut(s)	169, 326
Psp6I	CCWGG	2 cut(s)	682, 712
PspGI	CCWGG	2 cut(s)	682, 712
PspPI	GGNCC	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	249, 455
SatI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
Sau3AI	GATC	3 cut(s)	92, 331, 473
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	2 cut(s)	170, 327
ScrFI	CCNGG	2 cut(s)	684, 714
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
SfcI	CTRYAG	2 cut(s)	564, 594
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	3 cut(s)	306, 464, 519
SsiI	CCGC	3 cut(s)	65, 108, 792
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	3 cut(s)	626, 666, 826
StyD4I	CCNGG	2 cut(s)	682, 712
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	3 cut(s)	32, 201, 710
TaqI	TCGA	3 cut(s)	145, 159, 358
TasI	AATT	3 cut(s)	306, 464, 519
TauI	GCSGC	1 cut(s)	794
Tru1I	TTAA	2 cut(s)	249, 455
Tru9I	TTAA	2 cut(s)	249, 455
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	8 cut(s)	295, 311, 404, 431, 593, 650, 794, 804
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	4 cut(s)	34, 516, 728, 791
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	542
XspI	CTAG	3 cut(s)	626, 666, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.