Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006134

Physical Location & Seq

Genomic Coordinates Reverse (-)

6105283 .. 6109501

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAATCGATCAACGATGATGATTATGAGGATTGAAGAGTCGGCGATTGTTTTGTCTCTGCTCAAATCGGATCTCCGGCCGATGGAAGACGTTTTATCGGAATTCGACTCTAAGTTCGAAAGCGCTCGTTACCTCAGTGTCTGCAATTCTCTTTCCATGATGTTGCAGGATCAGCAGATGTTTAAGAATACTGAACGTCTAATTGCATTTGGTATCATATACCAGTGTTATTCTTCACAGAAGCCATCTTTCAACCCGTTTTTATCTGAAATGATAAGTGCTGCTTGTAATGAACAGCTGGAAAAGTCTGAAAGGGCATTTCTTCTCCACCTGTTACAATGGAATAGTTACAACAACGTGAAAGAGATTCTCAAACTCTCAGCTGTTGATTATATCAGATCGTTTGATCCTTCAACTCATGATTTTCCGGAACTAGGAGAGCTGCAACGAGAGTATGGCGACAAAGCCGATCCTGGACCATCTAGTCACATTTTTGCAGACTATTCCCTGAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGTGATCCTAACTCTCCAGAGTTTGATGTGCAAGCTGGAGTGAATCCCAGAATTGGATCTGGTGATAGGGATGAGGCACTATCTGGATTCTTAGGAAATTTGACAATGGGGGGATTAGGTCCTAGGTGGATCCGTCCATGTCCACCAAGGTACCCAGTTCATCAGAGCGAGTTGCTTTGGATTGACCCTGATAACAAGCATGAGCTTGTTTGGGACGATAAAATGTGTGCTGATACTAGCAGTGGTGCAACAGTTAGAGACTTGCTTGTTAAGGGTTTAAAGGTGACACTTTCACCTACGGAGCAAGAGGACATCATTACAGAATTGGCAAATGACCCAAAGCTTGTCTTTCACTGCGGAATAACTCCACGGAAGCTGCCGCAATTAGTAGAGCACAATCCTCAGATAGCAGTTGAAATTCTCACCAAGTTGAATAACTCCACAGAGATTAATGACTATTATGAAGCTCTAGGAAATATGGACATGAGCCTGCACTCAATGGAAGTTGTGAATAGGCTCACAACTGCAGTTGAACTTCCCAAGGACTTCATACGGATGTACATCACTAATTGCATATCGTCTTGTGAGAACGCTAAGCAAGACAAATACATGCAGAATAGGCTTGTACGGCTTGTTTGCGTCTTCTTGCAAAGCTTAATTCGTAACAAGATCATCAACGTGAAGGATCTATTCATAGAAGTTCAAGCTTTCTGCATTGAGTTTTCTCGGGTTCGAGAAGCAGCTGGTCTCTTCAGGCTTTTGAAACAATTGGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2363

Protein Analysis

441

Amino Acids

50.32

Weight (kDa)

5.19

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18420 AT5G18420 AT5G18420 AT5G18420
fragaria_vesca	FvH4_5g20280 FvH4_5g20280
malus_domestica	MD04G1052500.v1.1 MD06G1047700.v1.1
prunus_persica	Prupe.5G058000_v2.0.a1
pyrus_communis	pycom04g04630 pycom06g04070
rosa_chinensis	RchiOBHm_Chr7g0205341
rosa_laevigata	RLG00000003386
rosa_multiflora	Rmu_sc0009725.1_g000008 Rmu_ssc0000004.1_g000021
rosa_roxburghii	Rroxscaffold_3G00252440
rosa_rugosa	Rorug07G0089900 Rorug07G0090000 Rorug07G0090000 Rorug07G0090000 Rorug07G0090100 Rorug07G0090200
rosa_samantha	Rh7AG220600 Rh7BG216800 Rh7CG233600 Rh7DG227500
rosa_wichuraiana	Rw7G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	483
Acc65I	GGTACC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	696
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	2 cut(s)	903, 926
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	3 cut(s)	101, 643, 963
AcuI	CTGAAG	1 cut(s)	1282
AfaI	GTAC	3 cut(s)	698, 1106, 1173
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	82, 434, 599
AgsI	TTSAA	8 cut(s)	35, 253, 414, 962, 979, 1079, 1250, 1309
AjnI	CCWGG	1 cut(s)	472
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	3 cut(s)	60, 798, 1298
AlwNI	CAGNNNCTG	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	1272
Aor13HI	TCCGGA	1 cut(s)	427
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	281, 442, 922, 1286
ApoI	RAATTY	3 cut(s)	101, 643, 963
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AseI	ATTAAT	1 cut(s)	996
Asp718I	GGTACC	1 cut(s)	696
AspA2I	CCTAGG	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	476, 665
AsuHPI	GGTGA	4 cut(s)	620, 831, 841, 961
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	1272
AvaII	GGWCC	2 cut(s)	476, 665
AvrII	CCTAGG	1 cut(s)	668
BaeI	ACNNNNGTAYC	2 cut(s)	680, 713
BamHI	GGATCC	1 cut(s)	675
BanI	GGYRCC	1 cut(s)	696
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	93, 1180
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	4 cut(s)	268, 429, 909, 1298
BccI	CCATC	3 cut(s)	76, 253, 487
BceAI	ACGGC	1 cut(s)	1190
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	3 cut(s)	60, 798, 1298
BfaI	CTAG	5 cut(s)	434, 483, 669, 783, 1016
BfmI	CTRYAG	1 cut(s)	1071
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	5 cut(s)	282, 443, 923, 926, 1287
BlnI	CCTAGG	1 cut(s)	668
BlpI	GCTNAGC	1 cut(s)	1140
BlsI	GCNGC	5 cut(s)	283, 444, 924, 927, 1288
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	476, 665
BmeT110I	CYCGRG	1 cut(s)	1272
BmgT120I	GGNCC	2 cut(s)	476, 665
BmiI	GGNNCC	2 cut(s)	677, 698
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	695
BmuI	ACTGGG	1 cut(s)	695
BpiI	GAAGAC	2 cut(s)	93, 1180
BpmI	CTGGAG	2 cut(s)	546, 603
Bpu1102I	GCTNAGC	1 cut(s)	1140
Bpu14I	TTCGAA	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	1106
BsaI	GGTCTC	1 cut(s)	1298
BsaJI	CCNNGG	4 cut(s)	668, 692, 914, 1086
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 434, 599
Bse1I	ACTGG	2 cut(s)	223, 701
Bse8I	GATNNNNATC	1 cut(s)	1106
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	7
BseDI	CCNNGG	4 cut(s)	668, 692, 914, 1086
BseGI	GGATG	3 cut(s)	622, 1107, 1324
BseJI	GATNNNNATC	1 cut(s)	1106
BseLI	CCNNNNNNNGG	3 cut(s)	82, 434, 599
BseMII	CTCAG	3 cut(s)	148, 393, 962
BseNI	ACTGG	2 cut(s)	223, 701
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	268, 429, 909, 1298
BsgI	GTGCAG	1 cut(s)	1022
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	696
BshVI	ATCGAT	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	942
BsiHKCI	CYCGRG	1 cut(s)	1272
BsiSI	CCGG	2 cut(s)	76, 428
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	3 cut(s)	82, 434, 599
BsmAI	GTCTC	3 cut(s)	60, 798, 1298
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	1298
BsoBI	CYCGRG	1 cut(s)	1272
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp13I	TCCGGA	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	1104
Bsp1720I	GCTNAGC	1 cut(s)	1140
BspACI	CCGC	2 cut(s)	903, 926
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	3 cut(s)	147, 392, 961
BspDI	ATCGAT	1 cut(s)	7
BspEI	TCCGGA	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	677, 698
BspMAI	CTGCAG	1 cut(s)	1075
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	1298
BsrGI	TGTACA	1 cut(s)	1104
BsrI	ACTGG	2 cut(s)	223, 701
BssECI	CCNNGG	4 cut(s)	668, 692, 914, 1086
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	3 cut(s)	668, 692, 1086
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	799
Bst6I	CTCTTC	2 cut(s)	30, 1301
BstAUI	TGTACA	1 cut(s)	1104
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	579, 1037
BstDEI	CTNAG	6 cut(s)	111, 134, 379, 637, 948, 1140
BstDSI	CCRYGG	1 cut(s)	914
BstF5I	GGATG	3 cut(s)	622, 1107, 1324
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstMAI	GTCTC	3 cut(s)	60, 798, 1298
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 1165, 1174
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	1159
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	1071
BstV1I	GCAGC	4 cut(s)	268, 429, 909, 1298
BstV2I	GAAGAC	2 cut(s)	93, 1180
BstX2I	RGATCY	4 cut(s)	70, 602, 675, 1231
BstYI	RGATCY	4 cut(s)	70, 602, 675, 1231
BstZI	CGGCCG	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	914
BtsCI	GGATG	3 cut(s)	622, 1107, 1324
BtsI	GCAGTG	2 cut(s)	793, 898
BtsIMutI	CAGTG	4 cut(s)	142, 230, 793, 898
Cac8I	GCNNGC	2 cut(s)	579, 1037
CaiI	CAGNNNCTG	1 cut(s)	141
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	476, 665
ClaI	ATCGAT	1 cut(s)	7
CseI	GACGC	1 cut(s)	1174
Csp6I	GTAC	3 cut(s)	697, 1105, 1172
CviAII	CATG	7 cut(s)	157, 419, 524, 684, 746, 1030, 1156
CviQI	GTAC	3 cut(s)	697, 1105, 1172
DdeI	CTNAG	6 cut(s)	111, 134, 379, 637, 948, 1140
DraI	TTTAAA	1 cut(s)	825
DrdI	GACNNNNNNGTC	1 cut(s)	483
DseDI	GACNNNNNNGTC	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
Eam1104I	CTCTTC	2 cut(s)	30, 1301
EarI	CTCTTC	2 cut(s)	30, 1301
EclXI	CGGCCG	1 cut(s)	77
Eco130I	CCWWGG	3 cut(s)	668, 692, 1086
Eco31I	GGTCTC	1 cut(s)	1298
Eco47I	GGWCC	2 cut(s)	476, 665
Eco47III	AGCGCT	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	1282
Eco88I	CYCGRG	1 cut(s)	1272
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	3 cut(s)	668, 692, 1086
ErhI	CCWWGG	3 cut(s)	668, 692, 1086
FaeI	CATG	7 cut(s)	160, 422, 527, 687, 749, 1033, 1159
FalI	AAGNNNNNCTT	4 cut(s)	268, 300, 878, 910
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	7 cut(s)	156, 418, 523, 683, 745, 1029, 1155
Fnu4HI	GCNGC	5 cut(s)	282, 443, 923, 926, 1287
FokI	GGATG	2 cut(s)	629, 1114
Fsp4HI	GCNGC	5 cut(s)	282, 443, 923, 926, 1287
FspBI	CTAG	5 cut(s)	434, 483, 669, 783, 1016
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	5 cut(s)	282, 443, 923, 926, 1287
GsuI	CTGGAG	2 cut(s)	546, 603
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	2 cut(s)	76, 428
HgaI	GACGC	1 cut(s)	1174
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	7 cut(s)	160, 422, 527, 687, 749, 1033, 1159
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	3 cut(s)	887, 1198, 1251
HinfI	GANTC	6 cut(s)	4, 38, 107, 367, 589, 633
HpaII	CCGG	2 cut(s)	76, 428
HphI	GGTGA	4 cut(s)	620, 831, 841, 961
Hpy166II	GTNNAC	1 cut(s)	689
Hpy188I	TCNGA	7 cut(s)	70, 100, 268, 310, 398, 711, 951
Hpy188III	TCNNGA	6 cut(s)	419, 428, 530, 563, 630, 1280
Hpy8I	GTNNAC	1 cut(s)	689
HpyAV	CCTTC	2 cut(s)	420, 1222
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	4 cut(s)	90, 196, 357, 1224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 1165, 1174
HpyF3I	CTNAG	6 cut(s)	111, 134, 379, 637, 948, 1140
HpySE526I	ACGT	4 cut(s)	90, 196, 357, 1224
Hsp92II	CATG	7 cut(s)	160, 422, 527, 687, 749, 1033, 1159
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	427
KpnI	GGTACC	1 cut(s)	700
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	4 cut(s)	268, 429, 909, 1298
MaeI	CTAG	5 cut(s)	434, 483, 669, 783, 1016
MaeII	ACGT	4 cut(s)	90, 196, 357, 1224
MaeIII	GTNAC	6 cut(s)	128, 333, 347, 485, 829, 1208
MboII	GAAGA	6 cut(s)	47, 98, 225, 314, 1180, 1288
MfeI	CAATTG	1 cut(s)	1313
MflI	RGATCY	4 cut(s)	70, 602, 675, 1231
MhlI	GDGCHC	1 cut(s)	942
MlyI	GAGTC	2 cut(s)	47, 101
MnlI	CCTC	6 cut(s)	21, 143, 549, 613, 847, 957
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	5 cut(s)	183, 816, 824, 996, 1202
MslI	CAYNNNNRTG	2 cut(s)	1100, 1223
MspA1I	CMGCKG	3 cut(s)	298, 383, 1289
MspI	CCGG	2 cut(s)	76, 428
MspR9I	CCNGG	1 cut(s)	474
MunI	CAATTG	1 cut(s)	1313
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	172, 1165, 1174
NlaIII	CATG	7 cut(s)	160, 422, 527, 687, 749, 1033, 1159
NlaIV	GGNNCC	2 cut(s)	677, 698
NmuCI	GTSAC	2 cut(s)	485, 829
NspI	RCATGY	1 cut(s)	1159
NspV	TTCGAA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	418
PfeI	GAWTC	4 cut(s)	4, 367, 589, 633
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	283, 444, 924, 927, 1288
PleI	GAGTC	2 cut(s)	46, 101
PpsI	GAGTC	2 cut(s)	46, 101
PpuMI	RGGWCCY	1 cut(s)	665
PshBI	ATTAAT	1 cut(s)	996
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	677, 698
PspPI	GGNCC	2 cut(s)	476, 665
PspPPI	RGGWCCY	1 cut(s)	665
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	4 cut(s)	70, 602, 675, 1231
PvuII	CAGCTG	3 cut(s)	298, 383, 1289
RsaI	GTAC	3 cut(s)	698, 1106, 1173
RsaNI	GTAC	3 cut(s)	697, 1105, 1172
RseI	CAYNNNNRTG	2 cut(s)	1100, 1223
SaqAI	TTAA	5 cut(s)	183, 816, 824, 996, 1202
SatI	GCNGC	5 cut(s)	282, 443, 923, 926, 1287
Sau96I	GGNCC	2 cut(s)	476, 665
SchI	GAGTC	2 cut(s)	47, 101
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	942
SfcI	CTRYAG	1 cut(s)	1071
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	2 cut(s)	476, 665
SmiMI	CAYNNNNRTG	2 cut(s)	1100, 1223
SsiI	CCGC	2 cut(s)	903, 926
SspMI	CTAG	5 cut(s)	434, 483, 669, 783, 1016
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	3 cut(s)	668, 692, 1086
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	4 cut(s)	93, 199, 360, 1227
TaqI	TCGA	4 cut(s)	7, 105, 117, 1279
TatI	WGTACW	1 cut(s)	1104
TauI	GCSGC	1 cut(s)	928
TfiI	GAWTC	4 cut(s)	4, 367, 589, 633
Tru1I	TTAA	5 cut(s)	183, 816, 824, 996, 1202
Tru9I	TTAA	5 cut(s)	183, 816, 824, 996, 1202
TscAI	CASTG	4 cut(s)	142, 230, 793, 905
TseFI	GTSAC	2 cut(s)	485, 829
TseI	GCWGC	4 cut(s)	281, 442, 922, 1286
Tsp45I	GTSAC	2 cut(s)	485, 829
TspDTI	ATGAA	6 cut(s)	17, 306, 695, 1023, 1084, 1228
TspGWI	ACGGA	4 cut(s)	668, 860, 931, 1114
TspRI	CASTG	4 cut(s)	142, 230, 793, 905
VpaK11BI	GGWCC	2 cut(s)	476, 665
VspI	ATTAAT	1 cut(s)	996
XapI	RAATTY	3 cut(s)	101, 643, 963
XceI	RCATGY	1 cut(s)	1159
XmaJI	CCTAGG	1 cut(s)	668
XspI	CTAG	5 cut(s)	434, 483, 669, 783, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.