MD06G1047700.v1.1

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0006134
Physical Location & Seq
Reverse (-)
6463355 .. 6470420
7066 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1047700.v1.1.491

Sequence Viewer

Length: 1311 bp
ATGAAGCTCGGCTTTGAAGAATCGAAAGCGGTGTTTGGACTGCTCAGAGCAGAGCAGCGCCCGATCGAAGAGATCGTCTCTGAGTTCAACTCCATTTTCTCCCATGGCCGCCAATTCATTCCCTGCTTCTCTCTCTCCCTTCTTTTACAGGACAAGAAGATGCTGAACTCCTCTCAACGTTTGATTGCGTTCACTATTCTTCAGCAGGCATATTCGTCCCAGAAACCTTCTGCAAATCCGTTCTTTAGTTTACTTATAAACGCTGCATGTGATGTTGAAGTCGAAAAGTATGAGAGGGCACTTGTTCTGCAGCTATTACAGCTATTTGGCTCTGATGGCTCTAGTGGTAGCAAAGAGATACTTAAACAATCTGCTGCAGAGTACATCAAAAGTTTTGATCCTTCAGTACATGCATTCCCGCAACAAGAACAGTTGCAGCAGCAGTATGCTGATAAAGTTCATCCAGACCGGTTTATTTCTCCATTCAAGGATGGTTCTGTCAGAAATGTGGTTGCAGACCCTGATGTTCCTCATGGTTGTGATGTTAACTCATTAGAGTTTGATCTACAAACTGGAACAAAACCTAAAATTGGATCTGGAGATAGAGACGAGACAGTGCTTGGCTTGCTATCCAATTTAGCGCTGGAAGGGTTAGGTCCACACTGGAACAGGCCTATTCCACCAAGGCTCCCAGTTCAGGATGATGAACTAGTGTGGCTCAACCCTGTTGACAATCATGAACTTTTATGGGATGATGGCATGTGTTTTGATACTAGCAGAGGGGCAGCTGTCAGGGACTTGATTGCAAAAGCATTAAAAGGACCAATTGCGGCTGCACAACAAGAGCAAGTCTTTTCGGAGTTGGCAAATGACCTGAAACTTGTATATCATTGTGGGCTGACACCAAGAAAGCTACCGGAATTGGTGGAAAACAATCCCCTTATTGCAGTTGAAGTCCTCACCAAGCTGATAAATTCCCCTGAAATTGCAGAATACTTTACAGTGCTTGTCAATATGGACATGAGTCTGCACTCTATGGAAGTGGTGAACAGGCTTACTACAGCAGTCAAACTTCCTTCGGAGTTCATACACATGTACATATCAAATTGTATATCATCCTGTGAGAACATCAAGGATAAATACATGCAGAACAGACTTGTGAGACTAGTTTGCGTGTTTCTTCAGAGCCTTATCCGAAACAACATTATCAACGTCAAGGATCTTTTCATCGAAGTCCAGGCCTTTTGCATAGAGTTCTCGCGGATTAGGGAAGCGGCGGCGCTCTTCAGGCTCCTAAAGTCCTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2363

Protein Analysis

437

Amino Acids

49.08

Weight (kDa)

5.36

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNOT11 PF10155 309 - 433 6.7e-54 CCR4-NOT transcription complex subunit 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccII CGCG 1 cut(s) 1261
AciI CCGC 7 cut(s) 29, 109, 419, 830, 1261, 1274, 1277
AclI AACGTT 1 cut(s) 178
AclWI GGATC 3 cut(s) 392, 601, 1227
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 973
AcuI CTGAAG 4 cut(s) 185, 387, 1166, 1270
AfaI GTAC 3 cut(s) 383, 408, 1097
AfeI AGCGCT 1 cut(s) 642
AfiI CCNNNNNNNGG 2 cut(s) 590, 697
AflIII ACRYGT 1 cut(s) 1092
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 5 cut(s) 17, 88, 278, 487, 953
AhlI ACTAGT 2 cut(s) 709, 1165
AjnI CCWGG 1 cut(s) 1236
AluBI AGCT 6 cut(s) 7, 313, 322, 788, 913, 967
AluI AGCT 6 cut(s) 7, 313, 322, 788, 913, 967
Alw26I GTCTC 4 cut(s) 82, 600, 605, 1156
AlwI GGATC 3 cut(s) 392, 601, 1227
AlwNI CAGNNNCTG 1 cut(s) 521
Aor51HI AGCGCT 1 cut(s) 642
AoxI GGCC 3 cut(s) 106, 671, 1239
ApeKI GCWGC 8 cut(s) 55, 263, 310, 374, 436, 439, 785, 833
ApoI RAATTY 1 cut(s) 973
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AsiGI ACCGGT 1 cut(s) 468
AspLEI GCGC 3 cut(s) 60, 643, 1282
AspS9I GGNCC 2 cut(s) 656, 821
AsuHPI GGTGA 2 cut(s) 952, 1057
AvaII GGWCC 2 cut(s) 656, 821
BaeGI GKGCMC 1 cut(s) 301
BbvI GCAGC 8 cut(s) 67, 250, 322, 361, 448, 451, 797, 820
BccI CCATC 3 cut(s) 329, 485, 749
BciT130I CCWGG 1 cut(s) 1238
BcoDI GTCTC 4 cut(s) 82, 600, 605, 1156
BcuI ACTAGT 2 cut(s) 709, 1165
BfaI CTAG 4 cut(s) 342, 710, 774, 1166
BfmI CTRYAG 3 cut(s) 308, 375, 1059
BfoI RGCGCY 3 cut(s) 61, 644, 1283
Bme1390I CCNGG 1 cut(s) 1238
Bme18I GGWCC 2 cut(s) 656, 821
BmgT120I GGNCC 2 cut(s) 656, 821
BmiI GGNNCC 2 cut(s) 689, 1292
BmrFI CCNGG 1 cut(s) 1238
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 686
BoxI GACNNNNGTC 1 cut(s) 1023
BplI GAGNNNNNCTC 4 cut(s) 62, 94, 74, 106
BpmI CTGGAG 1 cut(s) 618
BsaJI CCNNGG 3 cut(s) 103, 683, 1302
BsaWI WCCGGW 2 cut(s) 468, 916
BsaXI ACNNNNNCTCC 2 cut(s) 672, 702
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 697
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 3 cut(s) 577, 668, 692
BseBI CCWGG 1 cut(s) 1238
BseDI CCNNGG 3 cut(s) 103, 683, 1302
BseGI GGATG 5 cut(s) 460, 496, 706, 757, 1115
BseLI CCNNNNNNNGG 2 cut(s) 590, 697
BseMII CTCAG 2 cut(s) 58, 72
BseNI ACTGG 3 cut(s) 577, 668, 692
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 8 cut(s) 67, 250, 322, 361, 448, 451, 797, 820
BsgI GTGCAG 2 cut(s) 819, 1013
Bsh1236I CGCG 1 cut(s) 1261
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 108, 673, 1241
BshTI ACCGGT 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 469, 917
BslFI GGGAC 2 cut(s) 202, 809
BslI CCNNNNNNNGG 2 cut(s) 590, 697
BsmAI GTCTC 4 cut(s) 82, 600, 605, 1156
BsmBI CGTCTC 2 cut(s) 82, 600
BsmFI GGGAC 2 cut(s) 202, 809
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 3 cut(s) 108, 673, 1241
Bsp1286I GDGCHC 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 1095
Bsp143I GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 7 cut(s) 29, 109, 419, 830, 1261, 1274, 1277
BspANI GGCC 3 cut(s) 108, 673, 1241
BspCNI CTCAG 2 cut(s) 57, 73
BspFNI CGCG 1 cut(s) 1261
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 689, 1292
BspMAI CTGCAG 2 cut(s) 312, 379
BspPI GGATC 3 cut(s) 392, 601, 1227
BspQI GCTCTTC 1 cut(s) 1289
BsrFI RCCGGY 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 1095
BsrI ACTGG 3 cut(s) 577, 668, 692
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 103, 683, 1302
BssMI GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
BssT1I CCWWGG 3 cut(s) 103, 683, 1302
Bst2UI CCWGG 1 cut(s) 1238
Bst4CI ACNGT 3 cut(s) 432, 616, 1003
Bst6I CTCTTC 2 cut(s) 63, 1289
BstAUI TGTACA 1 cut(s) 1095
BstC8I GCNNGC 2 cut(s) 207, 626
BstDEI CTNAG 2 cut(s) 44, 81
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 5 cut(s) 460, 496, 706, 757, 1115
BstFNI CGCG 1 cut(s) 1261
BstH2I RGCGCY 3 cut(s) 61, 644, 1283
BstHHI GCGC 3 cut(s) 60, 643, 1282
BstKTI GATC 6 cut(s) 66, 75, 400, 565, 596, 1222
BstMAI GTCTC 4 cut(s) 82, 600, 605, 1156
BstMBI GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 319, 336, 625, 1288
BstNI CCWGG 1 cut(s) 1238
BstNSI RCATGY 5 cut(s) 270, 413, 763, 1096, 1147
BstPAI GACNNNNGTC 1 cut(s) 1023
BstSCI CCNGG 1 cut(s) 1236
BstSFI CTRYAG 3 cut(s) 308, 375, 1059
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 1 cut(s) 1261
BstV1I GCAGC 8 cut(s) 67, 250, 322, 361, 448, 451, 797, 820
BstX2I RGATCY 2 cut(s) 593, 1219
BstYI RGATCY 2 cut(s) 593, 1219
BsuRI GGCC 3 cut(s) 108, 673, 1241
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 5 cut(s) 460, 496, 706, 757, 1115
BtsIMutI CAGTG 3 cut(s) 621, 661, 1008
Cac8I GCNNGC 2 cut(s) 207, 626
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 736
CfoI GCGC 3 cut(s) 60, 643, 1282
Cfr10I RCCGGY 1 cut(s) 468
Cfr13I GGNCC 2 cut(s) 656, 821
Csp6I GTAC 3 cut(s) 382, 407, 1096
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 9 cut(s) 104, 267, 410, 533, 737, 760, 1021, 1093, 1144
CviQI GTAC 3 cut(s) 382, 407, 1096
DdeI CTNAG 2 cut(s) 44, 81
DpnI GATC 6 cut(s) 65, 74, 399, 564, 595, 1221
DpnII GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 63, 1289
EarI CTCTTC 2 cut(s) 63, 1289
Eco130I CCWWGG 3 cut(s) 103, 683, 1302
Eco147I AGGCCT 2 cut(s) 673, 1241
Eco47I GGWCC 2 cut(s) 656, 821
Eco47III AGCGCT 1 cut(s) 642
Eco57I CTGAAG 4 cut(s) 185, 387, 1166, 1270
EcoRII CCWGG 1 cut(s) 1236
EcoT14I CCWWGG 3 cut(s) 103, 683, 1302
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 3 cut(s) 103, 683, 1302
Esp3I CGTCTC 2 cut(s) 82, 600
FaeI CATG 9 cut(s) 107, 270, 413, 536, 740, 763, 1024, 1096, 1147
FalI AAGNNNNNCTT 3 cut(s) 28, 345, 377
FaqI GGGAC 2 cut(s) 202, 809
FatI CATG 9 cut(s) 103, 266, 409, 532, 736, 759, 1020, 1092, 1143
FauI CCCGC 1 cut(s) 426
FokI GGATG 5 cut(s) 447, 503, 713, 764, 1102
FspBI CTAG 4 cut(s) 342, 710, 774, 1166
GlaI GCGC 3 cut(s) 59, 642, 1281
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 3 cut(s) 61, 644, 1283
HaeIII GGCC 3 cut(s) 108, 673, 1241
HapII CCGG 2 cut(s) 469, 917
HhaI GCGC 3 cut(s) 60, 643, 1282
Hin1II CATG 9 cut(s) 107, 270, 413, 536, 740, 763, 1024, 1096, 1147
Hin6I GCGC 3 cut(s) 58, 641, 1280
HinP1I GCGC 3 cut(s) 58, 641, 1280
HincII GTYRAC 2 cut(s) 547, 730
HindII GTYRAC 2 cut(s) 547, 730
HinfI GANTC 2 cut(s) 20, 1024
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 2 cut(s) 469, 917
HphI GGTGA 2 cut(s) 952, 1057
Hpy166II GTNNAC 6 cut(s) 192, 251, 547, 659, 730, 1048
Hpy188I TCNGA 8 cut(s) 47, 82, 334, 503, 859, 1081, 1185, 1196
Hpy188III TCNNGA 4 cut(s) 464, 597, 698, 737
Hpy8I GTNNAC 6 cut(s) 192, 251, 547, 659, 730, 1048
HpyAV CCTTC 5 cut(s) 149, 237, 411, 641, 1086
HpyCH4III ACNGT 3 cut(s) 432, 616, 1003
HpyCH4IV ACGT 2 cut(s) 178, 1212
HpyF10VI GCNNNNNNNGC 4 cut(s) 319, 336, 625, 1288
HpyF3I CTNAG 2 cut(s) 44, 81
HpySE526I ACGT 2 cut(s) 178, 1212
Hsp92II CATG 9 cut(s) 107, 270, 413, 536, 740, 763, 1024, 1096, 1147
HspAI GCGC 3 cut(s) 58, 641, 1280
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
LguI GCTCTTC 1 cut(s) 1289
LmnI GCTCC 2 cut(s) 693, 1296
Lsp1109I GCAGC 8 cut(s) 67, 250, 322, 361, 448, 451, 797, 820
LweI GCATC 1 cut(s) 150
MaeI CTAG 4 cut(s) 342, 710, 774, 1166
MaeII ACGT 2 cut(s) 178, 1212
MalI GATC 6 cut(s) 65, 74, 399, 564, 595, 1221
MboI GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
MboII GAAGA 6 cut(s) 29, 80, 169, 191, 1172, 1276
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 2 cut(s) 593, 1219
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 8 cut(s) 113, 588, 634, 825, 920, 973, 984, 1105
MlyI GAGTC 1 cut(s) 1033
MnlI CCTC 5 cut(s) 181, 288, 540, 773, 968
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 3 cut(s) 363, 546, 815
MslI CAYNNNNRTG 2 cut(s) 537, 1091
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 2 cut(s) 469, 917
MspR9I CCNGG 1 cut(s) 1238
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 1238
MvnI CGCG 1 cut(s) 1261
MwoI GCNNNNNNNGC 4 cut(s) 319, 336, 625, 1288
NcoI CCATGG 1 cut(s) 103
NdeII GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
NlaIII CATG 9 cut(s) 107, 270, 413, 536, 740, 763, 1024, 1096, 1147
NlaIV GGNNCC 2 cut(s) 689, 1292
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 5 cut(s) 270, 413, 763, 1096, 1147
PagI TCATGA 1 cut(s) 736
PceI AGGCCT 2 cut(s) 673, 1241
PciI ACATGT 1 cut(s) 1092
PciSI GCTCTTC 1 cut(s) 1289
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 20
PinAI ACCGGT 1 cut(s) 468
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 1 cut(s) 1032
PpsI GAGTC 1 cut(s) 1032
PscI ACATGT 1 cut(s) 1092
PshAI GACNNNNGTC 1 cut(s) 1023
PsiI TTATAA 1 cut(s) 257
Psp1406I AACGTT 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 1236
PspGI CCWGG 1 cut(s) 1236
PspN4I GGNNCC 2 cut(s) 689, 1292
PspPI GGNCC 2 cut(s) 656, 821
PstI CTGCAG 2 cut(s) 312, 379
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 2 cut(s) 593, 1219
PvuI CGATCG 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 3 cut(s) 383, 408, 1097
RsaNI GTAC 3 cut(s) 382, 407, 1096
RseI CAYNNNNRTG 2 cut(s) 537, 1091
SapI GCTCTTC 1 cut(s) 1289
SaqAI TTAA 3 cut(s) 363, 546, 815
Sau3AI GATC 6 cut(s) 63, 72, 397, 562, 593, 1219
Sau96I GGNCC 2 cut(s) 656, 821
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 1 cut(s) 1238
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 1 cut(s) 150
SfcI CTRYAG 3 cut(s) 308, 375, 1059
SinI GGWCC 2 cut(s) 656, 821
SmiMI CAYNNNNRTG 2 cut(s) 537, 1091
SpeI ACTAGT 2 cut(s) 709, 1165
Sse9I AATT 8 cut(s) 113, 588, 634, 825, 920, 973, 984, 1105
SseBI AGGCCT 2 cut(s) 673, 1241
SsiI CCGC 7 cut(s) 29, 109, 419, 830, 1261, 1274, 1277
SspMI CTAG 4 cut(s) 342, 710, 774, 1166
StuI AGGCCT 2 cut(s) 673, 1241
StyD4I CCNGG 1 cut(s) 1236
StyI CCWWGG 3 cut(s) 103, 683, 1302
TaaI ACNGT 3 cut(s) 432, 616, 1003
TaiI ACGT 2 cut(s) 181, 1215
TaqI TCGA 4 cut(s) 23, 66, 282, 1230
TasI AATT 8 cut(s) 113, 588, 634, 825, 920, 973, 984, 1105
TatI WGTACW 3 cut(s) 381, 406, 1095
TauI GCSGC 4 cut(s) 111, 833, 1277, 1280
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 3 cut(s) 363, 546, 815
Tru9I TTAA 3 cut(s) 363, 546, 815
TscAI CASTG 3 cut(s) 621, 668, 1008
TseI GCWGC 8 cut(s) 55, 263, 310, 374, 436, 439, 785, 833
TspDTI ATGAA 7 cut(s) 17, 106, 449, 720, 753, 1075, 1216
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 3 cut(s) 621, 668, 1008
VpaK11BI GGWCC 2 cut(s) 656, 821
XapI RAATTY 1 cut(s) 973
XceI RCATGY 5 cut(s) 270, 413, 763, 1096, 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XspI CTAG 4 cut(s) 342, 710, 774, 1166
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.