Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006134

Physical Location & Seq

Genomic Coordinates Forward (+)

4237175 .. 4244944

Gene Structure 7770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGAAGCTGGGGTTTGAAGAATCCAAGGTGGTGTTTGGACTGCTGAGAGCAGAGCAGCGCCCGATCGAAGAGATCGTCTCTGAGTTCAACTCCATTTTCTCTCATGGCCGCCAATTCACTCCCTGCTTCTCTCTCTCCATTCTTTTACAGGACAAGAAGATGCTGAGCTCCACTCAGCGTTTGATTGCCTTCGCTATTCTTCAGCAGGCCTACTCATCACAGAAACCTTCTGCAAATCCGTTCCTTGATTTACTTATAAACGCTGCATGTGATGTTGAAGCCGAAAAGTATGAGAGGGCACTTGTTCTGCAGCTATTACAGCTGTTTGGCTCTGTTGGCTCTAGTGAAAGCAAAGAGATTCTTAAAAAGTCTGCTGCAGAGTACATCAAAAGCTTTGATCCTTCAGTACATGCATTTCCGCAACATGAACAGTTGCAGCAGCAGTATGCTGATAAAGTCCATCCAGAACGATTTATTTCTCCATTCAAGGATGCTTCCATCAGAAATGTGGTTGCAGACCCTGATGTTCCTCGTGGTTGTGATGTTAACTCATTAGAGTTTGATATACAAACTGGAGCAAAACCTAAAATTGGATCTGGAGATAGAGACGAGACGGTGCTTGGCTTGCTATCCAATTTAACGCTGGAAGGGTTAGGTCCTCACTGGAACAGGCCTATTCCACCTAGGCTCCCAGTTCAGAATGATGAACTAGTGTGGCTTAACCCTGTGGACAATCATGAACTTTTATGGGATGATGGAATGTGTATTGATACTAGTAGAGGGGCAGCTGTCAGGGACTTGATTGCAAAAGCTTTAAAGGGACCACTTGCGCCTGCACAACAAGAGAAAGTCTTGTTGGAGCTGGCAAATGACCCGAAACTTGTATATCACTGTGGGCTGACACCAAGAAAGCTACCGGAATTGGTGGAAAATAATCCCCTTATTGCAGTTGAAGTCCTCGCCAAGCTCATAAAACTCCCTGAAATTGCAGAATACTTTACAGTGCTTGTCAATATGGACATGAGTCTGCACTCAATGGAAGTGGTGAACAGGCTTACTACAGCAGTTGGACTTCCTTCCGAGTTCATACACTTGTACATAGCAAATTGTATATCATCTTGTGAGAACATCAAGGATAAATACATGCAGAACAGACTTGTGAGACTTGTTTGCGTGTTTCTTCAGAGCCTTATCCGAAGCAAAATTATCAATGTTAAGGATCTTTTCATCGAAGTCCAAGCTTTTTGCATAGAGTTCTCGCGGATTAGGGAAGCAGCGGCACTGTTTAGGCTCCTAAAGTCCTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2363

Protein Analysis

437

Amino Acids

49.0

Weight (kDa)

5.72

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18420 AT5G18420 AT5G18420 AT5G18420
fragaria_vesca	FvH4_5g20280 FvH4_5g20280
malus_domestica	MD04G1052500.v1.1 MD06G1047700.v1.1
prunus_persica	Prupe.5G058000_v2.0.a1
pyrus_communis	pycom04g04630 pycom06g04070
rosa_chinensis	RchiOBHm_Chr7g0205341
rosa_laevigata	RLG00000003386
rosa_multiflora	Rmu_sc0009725.1_g000008 Rmu_ssc0000004.1_g000021
rosa_roxburghii	Rroxscaffold_3G00252440
rosa_rugosa	Rorug07G0089900 Rorug07G0090000 Rorug07G0090000 Rorug07G0090000 Rorug07G0090100 Rorug07G0090200
rosa_samantha	Rh7AG220600 Rh7BG216800 Rh7CG233600 Rh7DG227500
rosa_wichuraiana	Rw7G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccII	CGCG	1 cut(s)	1261
AciI	CCGC	4 cut(s)	109, 419, 1261, 1277
AclWI	GGATC	3 cut(s)	392, 601, 1227
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	3 cut(s)	185, 387, 1166
AfaI	GTAC	3 cut(s)	383, 408, 1097
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	5 cut(s)	17, 88, 278, 487, 953
AhlI	ACTAGT	2 cut(s)	709, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	839, 871
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	4 cut(s)	82, 600, 605, 1156
AlwI	GGATC	3 cut(s)	392, 601, 1227
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	3 cut(s)	106, 207, 671
ApeKI	GCWGC	8 cut(s)	55, 263, 310, 374, 436, 439, 785, 1274
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspA2I	CCTAGG	1 cut(s)	683
AspLEI	GCGC	2 cut(s)	60, 832
AspS9I	GGNCC	2 cut(s)	656, 821
AsuHPI	GGTGA	1 cut(s)	1057
AvaII	GGWCC	2 cut(s)	656, 821
AvrII	CCTAGG	1 cut(s)	683
BaeGI	GKGCMC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	8 cut(s)	67, 250, 322, 361, 448, 451, 797, 1286
BccI	CCATC	3 cut(s)	468, 506, 749
BcoDI	GTCTC	4 cut(s)	82, 600, 605, 1156
BcuI	ACTAGT	2 cut(s)	709, 773
BfaI	CTAG	4 cut(s)	342, 684, 710, 774
BfmI	CTRYAG	3 cut(s)	308, 375, 1059
BfoI	RGCGCY	1 cut(s)	61
BlnI	CCTAGG	1 cut(s)	683
BlpI	GCTNAGC	1 cut(s)	164
Bme18I	GGWCC	2 cut(s)	656, 821
BmgT120I	GGNCC	2 cut(s)	656, 821
BmiI	GGNNCC	3 cut(s)	689, 822, 1292
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	2 cut(s)	150, 481
BmuI	ACTGGG	1 cut(s)	686
BoxI	GACNNNNGTC	1 cut(s)	1023
BplI	GAGNNNNNCTC	6 cut(s)	62, 94, 74, 106, 157, 189
BpmI	CTGGAG	2 cut(s)	594, 618
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	24, 683, 1302
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	3 cut(s)	577, 668, 692
BseDI	CCNNGG	3 cut(s)	24, 683, 1302
BseGI	GGATG	3 cut(s)	460, 496, 757
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	4 cut(s)	35, 72, 155, 188
BseNI	ACTGG	3 cut(s)	577, 668, 692
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	8 cut(s)	67, 250, 322, 361, 448, 451, 797, 1286
BseYI	CCCAGC	1 cut(s)	7
BsgI	GTGCAG	2 cut(s)	819, 1013
Bsh1236I	CGCG	1 cut(s)	1261
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	108, 209, 673
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	2 cut(s)	809, 834
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	4 cut(s)	82, 600, 605, 1156
BsmBI	CGTCTC	3 cut(s)	82, 600, 605
BsmFI	GGGAC	2 cut(s)	809, 834
BsnI	GGCC	3 cut(s)	108, 209, 673
Bsp1286I	GDGCHC	2 cut(s)	170, 301
Bsp1407I	TGTACA	1 cut(s)	1095
Bsp143I	GATC	5 cut(s)	63, 72, 397, 593, 1219
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	4 cut(s)	109, 419, 1261, 1277
BspANI	GGCC	3 cut(s)	108, 209, 673
BspCNI	CTCAG	4 cut(s)	36, 73, 156, 187
BspFNI	CGCG	1 cut(s)	1261
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	3 cut(s)	689, 822, 1292
BspMAI	CTGCAG	2 cut(s)	312, 379
BspPI	GGATC	3 cut(s)	392, 601, 1227
BsrGI	TGTACA	1 cut(s)	1095
BsrI	ACTGG	3 cut(s)	577, 668, 692
BssECI	CCNNGG	3 cut(s)	24, 683, 1302
BssMI	GATC	5 cut(s)	63, 72, 397, 593, 1219
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	3 cut(s)	24, 683, 1302
Bst2BI	CACGAG	1 cut(s)	531
Bst4CI	ACNGT	5 cut(s)	432, 616, 893, 1003, 1284
Bst6I	CTCTTC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	1095
BstC8I	GCNNGC	4 cut(s)	207, 626, 834, 864
BstDEI	CTNAG	4 cut(s)	44, 81, 164, 174
BstF5I	GGATG	3 cut(s)	460, 496, 757
BstFNI	CGCG	1 cut(s)	1261
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	60, 832
BstKTI	GATC	5 cut(s)	66, 75, 400, 596, 1222
BstMAI	GTCTC	4 cut(s)	82, 600, 605, 1156
BstMBI	GATC	5 cut(s)	63, 72, 397, 593, 1219
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 336, 625
BstNSI	RCATGY	3 cut(s)	270, 413, 1147
BstPAI	GACNNNNGTC	1 cut(s)	1023
BstSFI	CTRYAG	3 cut(s)	308, 375, 1059
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	1261
BstV1I	GCAGC	8 cut(s)	67, 250, 322, 361, 448, 451, 797, 1286
BstX2I	RGATCY	2 cut(s)	593, 1219
BstYI	RGATCY	2 cut(s)	593, 1219
BsuRI	GGCC	3 cut(s)	108, 209, 673
BtsCI	GGATG	3 cut(s)	460, 496, 757
BtsIMutI	CAGTG	4 cut(s)	661, 889, 1008, 1280
Cac8I	GCNNGC	4 cut(s)	207, 626, 834, 864
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	2 cut(s)	60, 832
Cfr13I	GGNCC	2 cut(s)	656, 821
Csp6I	GTAC	3 cut(s)	382, 407, 1096
CspCI	CAANNNNNGTGG	2 cut(s)	1023, 1058
CviAII	CATG	7 cut(s)	104, 267, 410, 425, 737, 1021, 1144
CviQI	GTAC	3 cut(s)	382, 407, 1096
DdeI	CTNAG	4 cut(s)	44, 81, 164, 174
DpnI	GATC	5 cut(s)	65, 74, 399, 595, 1221
DpnII	GATC	5 cut(s)	63, 72, 397, 593, 1219
DraI	TTTAAA	1 cut(s)	816
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	3 cut(s)	24, 683, 1302
Eco147I	AGGCCT	2 cut(s)	209, 673
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	656, 821
Eco53kI	GAGCTC	1 cut(s)	168
Eco57I	CTGAAG	3 cut(s)	185, 387, 1166
EcoICRI	GAGCTC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	656
EcoT14I	CCWWGG	3 cut(s)	24, 683, 1302
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	3 cut(s)	24, 683, 1302
Esp3I	CGTCTC	3 cut(s)	82, 600, 605
FaeI	CATG	7 cut(s)	107, 270, 413, 428, 740, 1024, 1147
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	809, 834
FatI	CATG	7 cut(s)	103, 266, 409, 424, 736, 1020, 1143
FokI	GGATG	3 cut(s)	447, 503, 764
FriOI	GRGCYC	1 cut(s)	170
FspBI	CTAG	4 cut(s)	342, 684, 710, 774
GlaI	GCGC	2 cut(s)	59, 831
GsaI	CCCAGC	1 cut(s)	11
GsuI	CTGGAG	2 cut(s)	594, 618
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	3 cut(s)	108, 209, 673
HapII	CCGG	1 cut(s)	917
HhaI	GCGC	2 cut(s)	60, 832
Hin1II	CATG	7 cut(s)	107, 270, 413, 428, 740, 1024, 1147
Hin6I	GCGC	2 cut(s)	58, 830
HinP1I	GCGC	2 cut(s)	58, 830
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	3 cut(s)	391, 810, 1239
HinfI	GANTC	3 cut(s)	20, 358, 1024
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	1 cut(s)	1057
Hpy166II	GTNNAC	3 cut(s)	547, 730, 1048
Hpy188I	TCNGA	6 cut(s)	82, 503, 699, 1081, 1185, 1196
Hpy188III	TCNNGA	3 cut(s)	464, 597, 737
Hpy8I	GTNNAC	3 cut(s)	547, 730, 1048
HpyAV	CCTTC	5 cut(s)	199, 237, 411, 641, 1086
HpyCH4III	ACNGT	5 cut(s)	432, 616, 893, 1003, 1284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 336, 625
HpyF3I	CTNAG	4 cut(s)	44, 81, 164, 174
Hsp92II	CATG	7 cut(s)	107, 270, 413, 428, 740, 1024, 1147
HspAI	GCGC	2 cut(s)	58, 830
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	63, 72, 397, 593, 1219
LmnI	GCTCC	5 cut(s)	173, 575, 693, 859, 1296
Lsp1109I	GCAGC	8 cut(s)	67, 250, 322, 361, 448, 451, 797, 1286
LweI	GCATC	2 cut(s)	150, 481
MaeI	CTAG	4 cut(s)	342, 684, 710, 774
MalI	GATC	5 cut(s)	65, 74, 399, 595, 1221
MboI	GATC	5 cut(s)	63, 72, 397, 593, 1219
MboII	GAAGA	5 cut(s)	29, 80, 169, 191, 1172
MflI	RGATCY	2 cut(s)	593, 1219
MhlI	GDGCHC	2 cut(s)	170, 301
MluCI	AATT	7 cut(s)	113, 588, 634, 920, 984, 1105, 1203
MlyI	GAGTC	1 cut(s)	1033
MmeI	TCCRAC	2 cut(s)	837, 1048
MnlI	CCTC	5 cut(s)	288, 540, 669, 773, 968
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	6 cut(s)	363, 546, 638, 720, 815, 1215
MspA1I	CMGCKG	3 cut(s)	322, 788, 1277
MspI	CCGG	1 cut(s)	917
MvnI	CGCG	1 cut(s)	1261
MwoI	GCNNNNNNNGC	3 cut(s)	319, 336, 625
NdeII	GATC	5 cut(s)	63, 72, 397, 593, 1219
NlaIII	CATG	7 cut(s)	107, 270, 413, 428, 740, 1024, 1147
NlaIV	GGNNCC	3 cut(s)	689, 822, 1292
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	3 cut(s)	270, 413, 1147
PagI	TCATGA	1 cut(s)	736
PceI	AGGCCT	2 cut(s)	209, 673
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	20, 358
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	1032
PpsI	GAGTC	1 cut(s)	1032
PpuMI	RGGWCCY	1 cut(s)	656
PshAI	GACNNNNGTC	1 cut(s)	1023
PsiI	TTATAA	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	656
PspFI	CCCAGC	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	689, 822, 1292
PspPI	GGNCC	2 cut(s)	656, 821
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	2 cut(s)	312, 379
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	593, 1219
PvuI	CGATCG	1 cut(s)	66
PvuII	CAGCTG	2 cut(s)	322, 788
RsaI	GTAC	3 cut(s)	383, 408, 1097
RsaNI	GTAC	3 cut(s)	382, 407, 1096
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	6 cut(s)	363, 546, 638, 720, 815, 1215
Sau3AI	GATC	5 cut(s)	63, 72, 397, 593, 1219
Sau96I	GGNCC	2 cut(s)	656, 821
SchI	GAGTC	1 cut(s)	1033
SduI	GDGCHC	2 cut(s)	170, 301
SfaNI	GCATC	2 cut(s)	150, 481
SfcI	CTRYAG	3 cut(s)	308, 375, 1059
SinI	GGWCC	2 cut(s)	656, 821
SpeI	ACTAGT	2 cut(s)	709, 773
Sse9I	AATT	7 cut(s)	113, 588, 634, 920, 984, 1105, 1203
SseBI	AGGCCT	2 cut(s)	209, 673
SsiI	CCGC	4 cut(s)	109, 419, 1261, 1277
SspMI	CTAG	4 cut(s)	342, 684, 710, 774
SstI	GAGCTC	1 cut(s)	170
StuI	AGGCCT	2 cut(s)	209, 673
StyI	CCWWGG	3 cut(s)	24, 683, 1302
TaaI	ACNGT	5 cut(s)	432, 616, 893, 1003, 1284
TaqI	TCGA	2 cut(s)	66, 1230
TasI	AATT	7 cut(s)	113, 588, 634, 920, 984, 1105, 1203
TatI	WGTACW	3 cut(s)	381, 406, 1095
TauI	GCSGC	2 cut(s)	111, 1280
TfiI	GAWTC	2 cut(s)	20, 358
Tru1I	TTAA	6 cut(s)	363, 546, 638, 720, 815, 1215
Tru9I	TTAA	6 cut(s)	363, 546, 638, 720, 815, 1215
TscAI	CASTG	4 cut(s)	668, 896, 1008, 1287
TseI	GCWGC	8 cut(s)	55, 263, 310, 374, 436, 439, 785, 1274
TspDTI	ATGAA	6 cut(s)	17, 441, 720, 753, 1075, 1216
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	4 cut(s)	668, 896, 1008, 1287
VpaK11BI	GGWCC	2 cut(s)	656, 821
XceI	RCATGY	3 cut(s)	270, 413, 1147
XcmI	CCANNNNNNNNNTGG	2 cut(s)	505, 640
XmaJI	CCTAGG	1 cut(s)	683
XspI	CTAG	4 cut(s)	342, 684, 710, 774
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.