Rh7BG216800

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006134
Physical Location & Seq
Forward (+)
18528404 .. 18533848
5445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG216800.1

Sequence Viewer

Length: 1173 bp
ATGAAGAAGAGGGGGACTCTGGGGTTCGAAGATTCCAAGGCCGTGTTTGGACTGCTCAGAGCAGAGCAACGACCACTCGAAGAGATCGTCTCCGACTTCACCTCTATTTTCTCTCACGCCTTCCATTTCATTCCTTGCTTCTCCCTCTCCCTCCTCTTACAGGATAAGAAGATGCTGAGTTCCACCCAACGCTTGATTGCATTTGCTTTACTTCATCAGGCTTATGCTTCCCAGAAACCTTCTGCGAATCCGTTCGTAAATTTGATTATAAGTGCTGCATGCGATGTTGAAGCTGAAAAATGTGAGAGGGCATTTGTTCTGCAGCTATTACAGTTATCCGGGTCTGATGGCTCTAATAGTGGCAAAGAGCTTCTTAAACAGTCCGCGACAGATTACATTAAAAATTTTGATTCTTCGGTGCATGTCTTCCCGCAACAGGAACATCTGCAGCAGCAGTATGCAGATAAAGTCCATCCAGAACCATATAGTTCTCCATTCAAGGATGGTTCTATCAAAAATGTGGTAGCGGACCCTGATGTTCCTTCTGGTTGTGATACCAACTCATCAGAGTTTGATCTACAACCCGGAGCAAAACCTAAAGTCGGTTCTGGAGATAAAGACGAGACGGTGCTTGGCTTGCTGTCCAATCTAGCGCTGGAAGGATTAGGTCCTCACTGGAGTAGGCCTATTCCTCCGAGGCTTCCAGTTCAGGACGATGAACTAGTGTGGCTCAACCCAGTTGACAATCATGAACTTTTATGGGATGATGGTATGTGTGTTGATACCAGTAGAGGTGCAGCTGTAAGGGACTTGATTGCTAAAGCTTTGAAGGGACCACTTGTGCCTGCACAACAAGAGCAAGTCTTGATGGAGTTGACAAATGACCCGAAACTTGTATATCACTGTGGGCTGACACCAAGAAAGCTGCCGGAACTGGTGGAAAATAATCCCCTAATTGCAGTTGAAGTTCTCACCAAGTTGATAAACTCCCCTGAAATTGCAGAATATTTTACAGTGCTCGTCAATATGGACATGAGTCTACACTCCATGGAAGTTGTGAACCGGCTTACGACAGCCGTTGAACTTCCTTCTGAGTTCATACATATGTACATAACCAATTGTATATCTTCGTGTGAGAACATCAAGGTACTTGCTCGTGCCTATGGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2363

Protein Analysis

390

Amino Acids

43.19

Weight (kDa)

5.13

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNOT11 PF10155 313 - 382 1.6e-23 CCR4-NOT transcription complex subunit 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AccI GTMKAC 1 cut(s) 1039
AccII CGCG 1 cut(s) 386
AciI CCGC 3 cut(s) 384, 431, 527
AcsI RAATTY 2 cut(s) 259, 403
AfaI GTAC 2 cut(s) 1109, 1149
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 3 cut(s) 160, 436, 602
AgsI TTSAA 5 cut(s) 290, 499, 829, 965, 1082
AhlI ACTAGT 1 cut(s) 721
AluBI AGCT 6 cut(s) 293, 325, 370, 800, 824, 925
AluI AGCT 6 cut(s) 293, 325, 370, 800, 824, 925
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 2 cut(s) 94, 617
Aor51HI AGCGCT 1 cut(s) 654
AoxI GGCC 2 cut(s) 39, 683
ApeKI GCWGC 6 cut(s) 275, 322, 448, 451, 797, 925
ApoI RAATTY 2 cut(s) 259, 403
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 3 cut(s) 529, 668, 833
AsuC2I CCSGG 2 cut(s) 340, 585
AsuHPI GGTGA 2 cut(s) 91, 964
AsuII TTCGAA 1 cut(s) 27
AvaII GGWCC 3 cut(s) 529, 668, 833
BauI CACGAG 1 cut(s) 1155
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 6 cut(s) 262, 334, 460, 463, 809, 912
BccI CCATC 5 cut(s) 341, 480, 497, 761, 862
BceAI ACGGC 2 cut(s) 26, 1061
BcnI CCSGG 2 cut(s) 340, 585
BcoDI GTCTC 2 cut(s) 94, 617
BcuI ACTAGT 1 cut(s) 721
BfaI CTAG 2 cut(s) 650, 722
BfmI CTRYAG 2 cut(s) 320, 446
BfoI RGCGCY 1 cut(s) 656
BisI GCNGC 6 cut(s) 276, 323, 449, 452, 798, 926
BlsI GCNGC 6 cut(s) 277, 324, 450, 453, 799, 927
Bme1390I CCNGG 2 cut(s) 340, 585
Bme18I GGWCC 3 cut(s) 529, 668, 833
BmgT120I GGNCC 3 cut(s) 529, 668, 833
BmiI GGNNCC 2 cut(s) 531, 834
BmrFI CCNGG 2 cut(s) 340, 585
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 731
BoxI GACNNNNGTC 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 418
BplI GAGNNNNNCTC 3 cut(s) 33, 74, 106
BpmI CTGGAG 2 cut(s) 630, 697
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 340, 585
BsaJI CCNNGG 3 cut(s) 36, 695, 1047
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 436, 602
Bse118I RCCGGY 1 cut(s) 1062
Bse1I ACTGG 5 cut(s) 680, 704, 737, 786, 939
BseDI CCNNGG 3 cut(s) 36, 695, 1047
BseGI GGATG 3 cut(s) 472, 508, 769
BseLI CCNNNNNNNGG 3 cut(s) 160, 436, 602
BseMII CTCAG 3 cut(s) 70, 167, 1083
BseNI ACTGG 5 cut(s) 680, 704, 737, 786, 939
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 6 cut(s) 262, 334, 460, 463, 809, 912
BsgI GTGCAG 2 cut(s) 816, 831
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 41, 685
BsiHKAI GWGCWC 1 cut(s) 1020
BsiSI CCGG 4 cut(s) 339, 585, 929, 1063
BslFI GGGAC 3 cut(s) 28, 821, 846
BslI CCNNNNNNNGG 3 cut(s) 160, 436, 602
BsmAI GTCTC 2 cut(s) 94, 617
BsmBI CGTCTC 2 cut(s) 94, 617
BsmFI GGGAC 3 cut(s) 28, 821, 846
BsnI GGCC 2 cut(s) 41, 685
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp1407I TGTACA 1 cut(s) 1107
Bsp143I GATC 2 cut(s) 84, 574
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 3 cut(s) 384, 431, 527
BspANI GGCC 2 cut(s) 41, 685
BspCNI CTCAG 3 cut(s) 69, 168, 1084
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 2 cut(s) 531, 834
BspMAI CTGCAG 2 cut(s) 324, 450
BspT104I TTCGAA 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 1062
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 5 cut(s) 680, 704, 737, 786, 939
BssAI RCCGGY 1 cut(s) 1062
BssECI CCNNGG 3 cut(s) 36, 695, 1047
BssMI GATC 2 cut(s) 84, 574
BssSI CACGAG 1 cut(s) 1155
BssT1I CCWWGG 2 cut(s) 36, 1047
Bst2BI CACGAG 1 cut(s) 1155
Bst4CI ACNGT 5 cut(s) 333, 381, 628, 905, 1015
Bst6I CTCTTC 2 cut(s) 2, 75
BstAUI TGTACA 1 cut(s) 1107
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 280, 638, 846
BstDEI CTNAG 3 cut(s) 56, 176, 1092
BstDSI CCRYGG 1 cut(s) 1047
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 3 cut(s) 472, 508, 769
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 2 cut(s) 87, 577
BstMAI GTCTC 2 cut(s) 94, 617
BstMBI GATC 2 cut(s) 84, 574
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNSI RCATGY 2 cut(s) 282, 425
BstPAI GACNNNNGTC 1 cut(s) 1035
BstSCI CCNGG 2 cut(s) 338, 583
BstSFI CTRYAG 2 cut(s) 320, 446
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 6 cut(s) 262, 334, 460, 463, 809, 912
BstV2I GAAGAC 1 cut(s) 418
BsuRI GGCC 2 cut(s) 41, 685
BtgI CCRYGG 1 cut(s) 1047
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 472, 508, 769
BtsIMutI CAGTG 3 cut(s) 673, 901, 1020
Cac8I GCNNGC 3 cut(s) 280, 638, 846
CciI TCATGA 1 cut(s) 748
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 1 cut(s) 1062
Cfr13I GGNCC 3 cut(s) 529, 668, 833
Csp6I GTAC 2 cut(s) 1108, 1148
CviAII CATG 5 cut(s) 279, 422, 749, 1033, 1048
CviQI GTAC 2 cut(s) 1108, 1148
DdeI CTNAG 3 cut(s) 56, 176, 1092
DpnI GATC 2 cut(s) 86, 576
DpnII GATC 2 cut(s) 84, 574
Eam1104I CTCTTC 2 cut(s) 2, 75
EarI CTCTTC 2 cut(s) 2, 75
Eco130I CCWWGG 2 cut(s) 36, 1047
Eco147I AGGCCT 1 cut(s) 685
Eco47I GGWCC 3 cut(s) 529, 668, 833
Eco47III AGCGCT 1 cut(s) 654
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 36, 1047
ErhI CCWWGG 2 cut(s) 36, 1047
Esp3I CGTCTC 2 cut(s) 94, 617
FaeI CATG 5 cut(s) 282, 425, 752, 1036, 1051
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 3 cut(s) 28, 821, 846
FatI CATG 5 cut(s) 278, 421, 748, 1032, 1047
FauI CCCGC 1 cut(s) 438
FauNDI CATATG 1 cut(s) 1104
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 6 cut(s) 276, 323, 449, 452, 798, 926
FokI GGATG 3 cut(s) 459, 515, 776
Fsp4HI GCNGC 6 cut(s) 276, 323, 449, 452, 798, 926
FspBI CTAG 2 cut(s) 650, 722
GlaI GCGC 1 cut(s) 654
GluI GCNGC 6 cut(s) 276, 323, 449, 452, 798, 926
GsuI CTGGAG 2 cut(s) 630, 697
HaeII RGCGCY 1 cut(s) 656
HaeIII GGCC 2 cut(s) 41, 685
HapII CCGG 4 cut(s) 339, 585, 929, 1063
HhaI GCGC 1 cut(s) 655
Hin1II CATG 5 cut(s) 282, 425, 752, 1036, 1051
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 2 cut(s) 742, 876
HindII GTYRAC 2 cut(s) 742, 876
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 5 cut(s) 16, 32, 247, 410, 1036
HpaII CCGG 4 cut(s) 339, 585, 929, 1063
HphI GGTGA 2 cut(s) 91, 964
Hpy166II GTNNAC 4 cut(s) 742, 876, 1040, 1060
Hpy188I TCNGA 6 cut(s) 59, 94, 346, 568, 696, 1093
Hpy188III TCNNGA 5 cut(s) 476, 609, 710, 749, 865
Hpy8I GTNNAC 4 cut(s) 742, 876, 1040, 1060
HpyAV CCTTC 6 cut(s) 130, 249, 552, 653, 823, 1098
HpyCH4III ACNGT 5 cut(s) 333, 381, 628, 905, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 3 cut(s) 56, 176, 1092
Hsp92II CATG 5 cut(s) 282, 425, 752, 1036, 1051
HspAI GCGC 1 cut(s) 653
Kzo9I GATC 2 cut(s) 84, 574
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 6 cut(s) 262, 334, 460, 463, 809, 912
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 650, 722
MalI GATC 2 cut(s) 86, 576
MboI GATC 2 cut(s) 84, 574
MboII GAAGA 8 cut(s) 16, 19, 41, 92, 181, 405, 418, 1119
MfeI CAATTG 1 cut(s) 1117
MhlI GDGCHC 1 cut(s) 1020
MluCI AATT 5 cut(s) 259, 403, 954, 996, 1117
MlyI GAGTC 2 cut(s) 10, 1045
MmeI TCCRAC 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 3 cut(s) 375, 399, 1171
MslI CAYNNNNRTG 1 cut(s) 1103
MspA1I CMGCKG 1 cut(s) 800
MspI CCGG 4 cut(s) 339, 585, 929, 1063
MspR9I CCNGG 2 cut(s) 340, 585
MunI CAATTG 1 cut(s) 1117
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 637
NciI CCSGG 2 cut(s) 340, 585
NcoI CCATGG 1 cut(s) 1047
NdeI CATATG 1 cut(s) 1104
NdeII GATC 2 cut(s) 84, 574
NlaIII CATG 5 cut(s) 282, 425, 752, 1036, 1051
NlaIV GGNNCC 2 cut(s) 531, 834
NspI RCATGY 2 cut(s) 282, 425
NspV TTCGAA 1 cut(s) 27
PaeI GCATGC 1 cut(s) 282
PagI TCATGA 1 cut(s) 748
PceI AGGCCT 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 32, 247, 410
PkrI GCNGC 6 cut(s) 277, 324, 450, 453, 799, 927
PleI GAGTC 2 cut(s) 10, 1044
PpsI GAGTC 2 cut(s) 10, 1044
PpuMI RGGWCCY 1 cut(s) 668
PshAI GACNNNNGTC 1 cut(s) 1035
PsiI TTATAA 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 668
PspN4I GGNNCC 2 cut(s) 531, 834
PspPI GGNCC 3 cut(s) 529, 668, 833
PspPPI RGGWCCY 1 cut(s) 668
PstI CTGCAG 2 cut(s) 324, 450
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 2 cut(s) 1109, 1149
RsaNI GTAC 2 cut(s) 1108, 1148
RseI CAYNNNNRTG 1 cut(s) 1103
SaqAI TTAA 3 cut(s) 375, 399, 1171
SatI GCNGC 6 cut(s) 276, 323, 449, 452, 798, 926
Sau3AI GATC 2 cut(s) 84, 574
Sau96I GGNCC 3 cut(s) 529, 668, 833
SchI GAGTC 2 cut(s) 10, 1045
ScrFI CCNGG 2 cut(s) 340, 585
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 2 cut(s) 320, 446
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 3 cut(s) 529, 668, 833
SmiMI CAYNNNNRTG 1 cut(s) 1103
SpeI ACTAGT 1 cut(s) 721
SphI GCATGC 1 cut(s) 282
Sse9I AATT 5 cut(s) 259, 403, 954, 996, 1117
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 3 cut(s) 384, 431, 527
SspI AATATT 1 cut(s) 1007
SspMI CTAG 2 cut(s) 650, 722
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 2 cut(s) 338, 583
StyI CCWWGG 2 cut(s) 36, 1047
TaaI ACNGT 5 cut(s) 333, 381, 628, 905, 1015
TaqI TCGA 2 cut(s) 27, 78
TasI AATT 5 cut(s) 259, 403, 954, 996, 1117
TatI WGTACW 1 cut(s) 1107
TfiI GAWTC 3 cut(s) 32, 247, 410
Tru1I TTAA 3 cut(s) 375, 399, 1171
Tru9I TTAA 3 cut(s) 375, 399, 1171
TscAI CASTG 3 cut(s) 680, 908, 1020
TseI GCWGC 6 cut(s) 275, 322, 448, 451, 797, 925
TspDTI ATGAA 6 cut(s) 17, 118, 203, 732, 765, 1087
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 3 cut(s) 680, 908, 1020
VpaK11BI GGWCC 3 cut(s) 529, 668, 833
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 2 cut(s) 259, 403
XceI RCATGY 2 cut(s) 282, 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 1039
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 650, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.