Prupe.5G058000_v2.0.a1

CCR4-NOT transcription complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
6266284 .. 6273125
6842 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G058000.1

Sequence Viewer

Length: 1323 bp
ATGAAGAAGAGGGCGACGCTGGGGTTCGAAGAATCGAAGGCCGTGTTTGGTCTGCTGAGAGCAGAGCAACGTCCACTTGAAGAGATCGTCTCAGACTTCAACTCCTTTTTCTCCCATGGCCGCCAATTCATTCCCTGCTTTTCTATCTCCATTCTTTTACAGGATAAGAAGATGCTGAGTTCCACTCAACGTTTGATTGCGTTCGCTATTCTTCAGCAGGCGTATTCTTCCCAGAAACCTTCTGCAAATCCGTTCATTAGTTTACTAATAAATGCTGCATGTGATGTTGAAGCTGAAAAATATGAGAGGGCACTTATTCTTCAGCTATTACAGCTATTTGGCTCTGATGGCTCTAGTGGTGGCAAAGAGCTACTTAAACAGTCTGCTGCAGATTACATCAAAAGTTTTGATCCTTCAGTGCATGCCTTCCCGCAACATGAACAGTTGCAGCAGCAGTATGCTGATAAAGTCCATCCTGAACGATATAATTCTCCACTAAAGGATAGTTCAGTTAGAAATGTGATCGCAGATCCTGATGTTCCTCGCGGTTTTGATGTTAACTCATCAGAGTTTGATCTACAACCAGGAGCAAATCCTAAGCTTAGTTCTGGAGATAGAGATGAGACGGTGCTTGGTTTGCTGTCCAATTTAGCGCTCGAAGGGTTAGGTCCTCACTGGAAGAGGCCTATTCCACCAAGGCTCCCAGTACAGGATGATGAACTAGTCTGGCTCAACCCTGTTGACAATCATGAACTTTTATGGGATGATGGTATGTGTGTTGATACTAGCAGAGGGGCAGCTGTCAGGGACTTGATTGCAAAAGCTTTGAAGGGACCACTTGCACCTGCACAACAAGAGCAAGTCTTGTTGGAGTTGGCAAATGACCCGAAACTTGTATATCACTGTGGGTTGACACCAAGAAAGCTACCGGAATTGGTGGAAAATAATCCCCTCATTGCGGTTGAAGTTCTCACCAAGTTGATAAATTCCCCTGAAATCGCAGAATACTTTACAGTGCTTGTCAATATGGACATGAGTCTACACTCTATGGAAGTGGTGAACAGGCTTACAACAGCAGTTGAACTTCCTTCTGAGTTCATACACATGTACATAACAAATTGTATATCATCGTGTGAGAATATCAAGGACAAGTACATGCAGAACAGACTTGTGAGGCTTGTTTGTGTGTTTCTGCAGAGCCTTATCCGAAACAACATTATCAATGTTAAGGATCTTTTCATCGAAGTCCAAGCGTTTTGCATAGAGTTTTCACGGATTAGGGAAGCAGCGGCACTCTTTAGGCTCCTTAAGTCATTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

49.47

Weight (kDa)

5.44

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 853
Acc36I ACCTGC 1 cut(s) 853
AccI GTMKAC 1 cut(s) 1039
AccII CGCG 1 cut(s) 546
AciI CCGC 5 cut(s) 121, 431, 546, 959, 1289
AclI AACGTT 1 cut(s) 190
AclWI GGATC 3 cut(s) 404, 524, 1239
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 985
AcuI CTGAAG 3 cut(s) 197, 305, 399
AfaI GTAC 3 cut(s) 708, 1109, 1154
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 2 cut(s) 709, 958
AflII CTTAAG 1 cut(s) 1307
AflIII ACRYGT 1 cut(s) 1104
AgsI TTSAA 6 cut(s) 80, 100, 290, 829, 965, 1082
AhlI ACTAGT 1 cut(s) 721
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 8 cut(s) 293, 325, 334, 370, 601, 800, 824, 925
AluI AGCT 8 cut(s) 293, 325, 334, 370, 601, 800, 824, 925
Alw26I GTCTC 2 cut(s) 94, 617
AlwI GGATC 3 cut(s) 404, 524, 1239
AlwNI CAGNNNCTG 1 cut(s) 533
Aor51HI AGCGCT 1 cut(s) 654
AoxI GGCC 3 cut(s) 39, 118, 683
ApeKI GCWGC 6 cut(s) 275, 386, 448, 451, 797, 1286
ApoI RAATTY 1 cut(s) 985
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 668, 833
AsuHPI GGTGA 2 cut(s) 964, 1069
AsuII TTCGAA 1 cut(s) 27
AvaII GGWCC 2 cut(s) 668, 833
BaeGI GKGCMC 1 cut(s) 313
BbvI GCAGC 6 cut(s) 262, 373, 460, 463, 809, 1298
BccI CCATC 3 cut(s) 341, 480, 761
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 2 cut(s) 94, 617
BcuI ACTAGT 1 cut(s) 721
BfaI CTAG 3 cut(s) 354, 722, 786
BfmI CTRYAG 2 cut(s) 387, 1193
BfoI RGCGCY 1 cut(s) 656
BfrI CTTAAG 1 cut(s) 1307
BfuAI ACCTGC 1 cut(s) 853
BisI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
BlsI GCNGC 8 cut(s) 122, 277, 388, 450, 453, 799, 1288, 1291
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 2 cut(s) 668, 833
BmgT120I GGNCC 2 cut(s) 668, 833
BmiI GGNNCC 3 cut(s) 701, 834, 1304
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 698
BoxI GACNNNNGTC 1 cut(s) 1035
BplI GAGNNNNNCTC 4 cut(s) 74, 106, 169, 201
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 115, 695
BsaWI WCCGGW 1 cut(s) 928
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 684, 714
Bsc4I CCNNNNNNNGG 2 cut(s) 709, 958
Bse1I ACTGG 2 cut(s) 680, 704
Bse3DI GCAATG 1 cut(s) 954
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 115, 695
BseGI GGATG 3 cut(s) 472, 718, 769
BseLI CCNNNNNNNGG 2 cut(s) 709, 958
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 4 cut(s) 47, 105, 167, 1083
BseNI ACTGG 2 cut(s) 680, 704
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 6 cut(s) 262, 373, 460, 463, 809, 1298
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 831
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 3 cut(s) 41, 120, 685
BsiSI CCGG 1 cut(s) 929
BslFI GGGAC 2 cut(s) 821, 846
BslI CCNNNNNNNGG 2 cut(s) 709, 958
BsmAI GTCTC 2 cut(s) 94, 617
BsmBI CGTCTC 2 cut(s) 94, 617
BsmFI GGGAC 2 cut(s) 821, 846
BsnI GGCC 3 cut(s) 41, 120, 685
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 313
Bsp1407I TGTACA 1 cut(s) 1107
Bsp143I GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 5 cut(s) 121, 431, 546, 959, 1289
BspANI GGCC 3 cut(s) 41, 120, 685
BspCNI CTCAG 4 cut(s) 48, 104, 168, 1084
BspFNI CGCG 1 cut(s) 546
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 3 cut(s) 701, 834, 1304
BspMAI CTGCAG 2 cut(s) 391, 1197
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 3 cut(s) 404, 524, 1239
BspT104I TTCGAA 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 1307
BsrDI GCAATG 1 cut(s) 954
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 2 cut(s) 680, 704
BssECI CCNNGG 2 cut(s) 115, 695
BssMI GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
BssT1I CCWWGG 2 cut(s) 115, 695
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 5 cut(s) 381, 444, 628, 905, 1015
Bst6I CTCTTC 3 cut(s) 2, 75, 674
BstAFI CTTAAG 1 cut(s) 1307
BstAUI TGTACA 1 cut(s) 1107
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 219, 423
BstDEI CTNAG 6 cut(s) 56, 91, 176, 597, 602, 1092
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 472, 718, 769
BstFNI CGCG 1 cut(s) 546
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 6 cut(s) 87, 412, 525, 532, 577, 1234
BstMAI GTCTC 2 cut(s) 94, 617
BstMBI GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 331, 348, 637
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 4 cut(s) 282, 425, 1108, 1159
BstPAI GACNNNNGTC 1 cut(s) 1035
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 2 cut(s) 387, 1193
BstSLI GKGCMC 1 cut(s) 313
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 6 cut(s) 262, 373, 460, 463, 809, 1298
BstX2I RGATCY 2 cut(s) 529, 1231
BstYI RGATCY 2 cut(s) 529, 1231
BsuRI GGCC 3 cut(s) 41, 120, 685
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 472, 718, 769
BtsIMutI CAGTG 4 cut(s) 423, 673, 901, 1020
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 2 cut(s) 219, 423
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 748
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 2 cut(s) 668, 833
CseI GACGC 1 cut(s) 25
Csp6I GTAC 3 cut(s) 707, 1108, 1153
CviAII CATG 8 cut(s) 116, 279, 422, 437, 749, 1033, 1105, 1156
CviQI GTAC 3 cut(s) 707, 1108, 1153
DdeI CTNAG 6 cut(s) 56, 91, 176, 597, 602, 1092
DpnI GATC 6 cut(s) 86, 411, 524, 531, 576, 1233
DpnII GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 3 cut(s) 2, 75, 674
EarI CTCTTC 3 cut(s) 2, 75, 674
Eco130I CCWWGG 2 cut(s) 115, 695
Eco147I AGGCCT 1 cut(s) 685
Eco47I GGWCC 2 cut(s) 668, 833
Eco47III AGCGCT 1 cut(s) 654
Eco57I CTGAAG 3 cut(s) 197, 305, 399
EcoO109I RGGNCCY 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 2 cut(s) 115, 695
ErhI CCWWGG 2 cut(s) 115, 695
Esp3I CGTCTC 2 cut(s) 94, 617
FaeI CATG 8 cut(s) 119, 282, 425, 440, 752, 1036, 1108, 1159
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 2 cut(s) 821, 846
FatI CATG 8 cut(s) 115, 278, 421, 436, 748, 1032, 1104, 1155
FauI CCCGC 1 cut(s) 438
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
FokI GGATG 3 cut(s) 459, 725, 776
Fsp4HI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
FspBI CTAG 3 cut(s) 354, 722, 786
GlaI GCGC 1 cut(s) 654
GluI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 656
HaeIII GGCC 3 cut(s) 41, 120, 685
HapII CCGG 1 cut(s) 929
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 655
Hin1II CATG 8 cut(s) 119, 282, 425, 440, 752, 1036, 1108, 1159
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 3 cut(s) 559, 742, 912
HindII GTYRAC 3 cut(s) 559, 742, 912
HindIII AAGCTT 2 cut(s) 599, 822
HinfI GANTC 2 cut(s) 32, 1036
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 1 cut(s) 929
HphI GGTGA 2 cut(s) 964, 1069
Hpy166II GTNNAC 7 cut(s) 74, 263, 559, 742, 912, 1040, 1060
Hpy188I TCNGA 5 cut(s) 94, 346, 568, 1093, 1208
Hpy188III TCNNGA 4 cut(s) 476, 533, 609, 749
Hpy8I GTNNAC 7 cut(s) 74, 263, 559, 742, 912, 1040, 1060
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 7 cut(s) 31, 249, 423, 436, 653, 823, 1098
HpyCH4III ACNGT 5 cut(s) 381, 444, 628, 905, 1015
HpyCH4IV ACGT 2 cut(s) 70, 190
HpyF10VI GCNNNNNNNGC 3 cut(s) 331, 348, 637
HpyF3I CTNAG 6 cut(s) 56, 91, 176, 597, 602, 1092
HpySE526I ACGT 2 cut(s) 70, 190
Hsp92II CATG 8 cut(s) 119, 282, 425, 440, 752, 1036, 1108, 1159
HspAI GCGC 1 cut(s) 653
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
LmnI GCTCC 3 cut(s) 587, 705, 1308
Lsp1109I GCAGC 6 cut(s) 262, 373, 460, 463, 809, 1298
LweI GCATC 1 cut(s) 162
MaeI CTAG 3 cut(s) 354, 722, 786
MaeII ACGT 2 cut(s) 70, 190
MalI GATC 6 cut(s) 86, 411, 524, 531, 576, 1233
MboI GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
MboII GAAGA 9 cut(s) 16, 19, 41, 92, 181, 203, 219, 311, 691
MflI RGATCY 2 cut(s) 529, 1231
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 6 cut(s) 125, 487, 646, 932, 985, 1117
MlyI GAGTC 1 cut(s) 1045
MmeI TCCRAC 1 cut(s) 849
MnlI CCTC 8 cut(s) 3, 300, 552, 675, 681, 785, 962, 1167
MseI TTAA 4 cut(s) 375, 558, 1227, 1308
MslI CAYNNNNRTG 2 cut(s) 1103, 1318
MspA1I CMGCKG 2 cut(s) 800, 1289
MspCI CTTAAG 1 cut(s) 1307
MspI CCGG 1 cut(s) 929
MspR9I CCNGG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 3 cut(s) 331, 348, 637
NcoI CCATGG 1 cut(s) 115
NdeII GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
NlaIII CATG 8 cut(s) 119, 282, 425, 440, 752, 1036, 1108, 1159
NlaIV GGNNCC 3 cut(s) 701, 834, 1304
NspI RCATGY 4 cut(s) 282, 425, 1108, 1159
NspV TTCGAA 1 cut(s) 27
PaeI GCATGC 1 cut(s) 425
PagI TCATGA 1 cut(s) 748
PaqCI CACCTGC 1 cut(s) 853
PceI AGGCCT 1 cut(s) 685
PciI ACATGT 1 cut(s) 1104
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 8 cut(s) 122, 277, 388, 450, 453, 799, 1288, 1291
PleI GAGTC 1 cut(s) 1044
PpsI GAGTC 1 cut(s) 1044
PpuMI RGGWCCY 1 cut(s) 668
PscI ACATGT 1 cut(s) 1104
PshAI GACNNNNGTC 1 cut(s) 1035
Psp1406I AACGTT 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 3 cut(s) 701, 834, 1304
PspPI GGNCC 2 cut(s) 668, 833
PspPPI RGGWCCY 1 cut(s) 668
PstI CTGCAG 2 cut(s) 391, 1197
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 2 cut(s) 529, 1231
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 3 cut(s) 708, 1109, 1154
RsaNI GTAC 3 cut(s) 707, 1108, 1153
RseI CAYNNNNRTG 2 cut(s) 1103, 1318
SaqAI TTAA 4 cut(s) 375, 558, 1227, 1308
SatI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
Sau3AI GATC 6 cut(s) 84, 409, 522, 529, 574, 1231
Sau96I GGNCC 2 cut(s) 668, 833
SchI GAGTC 1 cut(s) 1045
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 2 cut(s) 387, 1193
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 2 cut(s) 668, 833
SmiMI CAYNNNNRTG 2 cut(s) 1103, 1318
SmlI CTYRAG 1 cut(s) 1307
SmoI CTYRAG 1 cut(s) 1307
SpeI ACTAGT 1 cut(s) 721
SphI GCATGC 1 cut(s) 425
Sse9I AATT 6 cut(s) 125, 487, 646, 932, 985, 1117
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 5 cut(s) 121, 431, 546, 959, 1289
SspMI CTAG 3 cut(s) 354, 722, 786
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 2 cut(s) 115, 695
TaaI ACNGT 5 cut(s) 381, 444, 628, 905, 1015
TaiI ACGT 2 cut(s) 73, 193
TaqI TCGA 4 cut(s) 27, 35, 657, 1242
TasI AATT 6 cut(s) 125, 487, 646, 932, 985, 1117
TatI WGTACW 3 cut(s) 706, 1107, 1152
TauI GCSGC 2 cut(s) 123, 1292
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 4 cut(s) 375, 558, 1227, 1308
Tru9I TTAA 4 cut(s) 375, 558, 1227, 1308
TscAI CASTG 4 cut(s) 423, 680, 908, 1020
TseI GCWGC 6 cut(s) 275, 386, 448, 451, 797, 1286
TspDTI ATGAA 8 cut(s) 17, 118, 244, 453, 732, 765, 1087, 1228
TspGWI ACGGA 2 cut(s) 240, 1288
TspRI CASTG 4 cut(s) 423, 680, 908, 1020
Vha464I CTTAAG 1 cut(s) 1307
VpaK11BI GGWCC 2 cut(s) 668, 833
XapI RAATTY 1 cut(s) 985
XceI RCATGY 4 cut(s) 282, 425, 1108, 1159
XmiI GTMKAC 1 cut(s) 1039
XspI CTAG 3 cut(s) 354, 722, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.