Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000004.1

Orthogroup ID

OG0006134

Physical Location & Seq

Genomic Coordinates Reverse (-)

75810 .. 80779

Gene Structure 4970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000004.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atgaagaagagggggactctggggttcgaagattccaaggccgtgtttggactgctcagagcagagcaacgaccactcgaagagatcgtctccgacttcacctctattttctctcacgccttccatttcattccttgcttctccctctccctcctcttacaggataagaagatgctgagttccacccaacgcttgattgcatttgctttacttcaccaggcttatgcttcccagaaaccttccgcgaatccgttcataaatttgattataagtgctgcatgcgatgttgaagctgaaaaatgtgagagggcatttgttttgcagctattacagttatccgggtctgatggctctaatagtggcaaagagcttcttaaacagtccgcgacagattacattaaaaattttgattcttcggtcttcccgcaacaggaacatctgcagcagcagtatgcagataaagtccatccagaaccgtatagttctccattcaaggatggttctatcaaaaatgtggtagcggaccctgatgttccttctggttgtgataacaactcatcagagtttgatctacaacccggagcaaaacctaaagtcggttctggagataaagatgagacagtgcttggcttgctgtccaatctagcgctggaaggattaggtcctcactggagtaggcctattcctccgaggcttccagttcaggacgatgaactagtgtggctcaacccagttgacaatcatgaacttttatgggatgatggtatgtgtgttgataccagcagaggtgcagctgtaagggacttgattgctaaagctttgaagggaccacttgtgcctgcacaacaagagcaagtcgtgatggagttgacaaaggacccgaagcttgtatatcactgtgggctgacaccaagaaagctaccggaactggtggaaaataatcccctaattgcagttgaagttctcaccaagttgataaactcccctgaaattgcagaatattttacagtgctcgtcaatatggacatgagtctacactccatggaagttgtgaaccggcttacgacagccgttgaacttccttctgagttcatacacatgtacataaccaattgtatatcctcgtgtgagaacattaaggacaagtacatgcagaacagacttgtgaggcttgtctgtgtatttctgcagagccttatccgaaacaacattataaatgttaaggatcttttcattgaagttcaagctttttgcattgagttctcccggattagagaagcagccgcactctttaggctcctaaaatccttggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2363

Protein Analysis

438

Amino Acids

48.97

Weight (kDa)

5.34

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18420 AT5G18420 AT5G18420 AT5G18420
fragaria_vesca	FvH4_5g20280 FvH4_5g20280
malus_domestica	MD04G1052500.v1.1 MD06G1047700.v1.1
prunus_persica	Prupe.5G058000_v2.0.a1
pyrus_communis	pycom04g04630 pycom06g04070
rosa_chinensis	RchiOBHm_Chr7g0205341
rosa_laevigata	RLG00000003386
rosa_multiflora	Rmu_sc0009725.1_g000008 Rmu_ssc0000004.1_g000021
rosa_roxburghii	Rroxscaffold_3G00252440
rosa_rugosa	Rorug07G0089900 Rorug07G0090000 Rorug07G0090000 Rorug07G0090000 Rorug07G0090100 Rorug07G0090200
rosa_samantha	Rh7AG220600 Rh7BG216800 Rh7CG233600 Rh7DG227500
rosa_wichuraiana	Rw7G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	269, 1214
AccI	GTMKAC	1 cut(s)	1033
AccII	CGCG	2 cut(s)	245, 386
AciI	CCGC	5 cut(s)	243, 384, 425, 521, 1284
AclWI	GGATC	1 cut(s)	1233
AcsI	RAATTY	2 cut(s)	259, 403
AfaI	GTAC	2 cut(s)	1103, 1148
AfeI	AGCGCT	1 cut(s)	648
AfiI	CCNNNNNNNGG	3 cut(s)	160, 430, 596
AflIII	ACRYGT	1 cut(s)	1098
AgsI	TTSAA	7 cut(s)	290, 493, 823, 959, 1076, 1238, 1244
AhlI	ACTAGT	1 cut(s)	715
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	8 cut(s)	293, 325, 370, 794, 818, 886, 919, 1247
AluI	AGCT	8 cut(s)	293, 325, 370, 794, 818, 886, 919, 1247
Alw21I	GWGCWC	1 cut(s)	1014
Alw26I	GTCTC	2 cut(s)	94, 611
AlwI	GGATC	1 cut(s)	1233
Aor51HI	AGCGCT	1 cut(s)	648
AoxI	GGCC	2 cut(s)	39, 677
ApeKI	GCWGC	6 cut(s)	275, 322, 442, 445, 791, 1280
ApoI	RAATTY	2 cut(s)	259, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	4 cut(s)	523, 662, 827, 877
AsuC2I	CCSGG	3 cut(s)	340, 579, 1267
AsuHPI	GGTGA	3 cut(s)	91, 206, 958
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	4 cut(s)	523, 662, 827, 877
BauI	CACGAG	1 cut(s)	1123
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	1014
BbvI	GCAGC	6 cut(s)	262, 334, 454, 457, 803, 1292
BccI	CCATC	5 cut(s)	341, 474, 491, 755, 856
BceAI	ACGGC	2 cut(s)	26, 1055
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	3 cut(s)	340, 579, 1267
BcoDI	GTCTC	2 cut(s)	94, 611
BcuI	ACTAGT	1 cut(s)	715
BfaI	CTAG	2 cut(s)	644, 716
BfmI	CTRYAG	2 cut(s)	440, 1187
BfoI	RGCGCY	1 cut(s)	650
BisI	GCNGC	7 cut(s)	276, 323, 443, 446, 792, 1281, 1284
BlsI	GCNGC	7 cut(s)	277, 324, 444, 447, 793, 1282, 1285
Bme1390I	CCNGG	4 cut(s)	218, 340, 579, 1267
Bme18I	GGWCC	4 cut(s)	523, 662, 827, 877
BmgT120I	GGNCC	4 cut(s)	523, 662, 827, 877
BmiI	GGNNCC	4 cut(s)	525, 828, 879, 1298
BmrFI	CCNGG	4 cut(s)	218, 340, 579, 1267
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	725
BoxI	GACNNNNGTC	1 cut(s)	1029
BpiI	GAAGAC	1 cut(s)	412
BplI	GAGNNNNNCTC	3 cut(s)	33, 74, 106
BpmI	CTGGAG	2 cut(s)	624, 691
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	3 cut(s)	340, 579, 1267
BsaJI	CCNNGG	4 cut(s)	36, 689, 1041, 1308
BsaWI	WCCGGW	1 cut(s)	922
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 430, 596
Bse118I	RCCGGY	1 cut(s)	1056
Bse1I	ACTGG	4 cut(s)	674, 698, 731, 933
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	4 cut(s)	36, 689, 1041, 1308
BseGI	GGATG	3 cut(s)	466, 502, 763
BseLI	CCNNNNNNNGG	3 cut(s)	160, 430, 596
BseMII	CTCAG	3 cut(s)	70, 167, 1077
BseNI	ACTGG	4 cut(s)	674, 698, 731, 933
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	6 cut(s)	262, 334, 454, 457, 803, 1292
BsgI	GTGCAG	2 cut(s)	810, 825
Bsh1236I	CGCG	2 cut(s)	245, 386
BshFI	GGCC	2 cut(s)	41, 679
BsiHKAI	GWGCWC	1 cut(s)	1014
BsiSI	CCGG	5 cut(s)	339, 579, 923, 1057, 1267
BslFI	GGGAC	3 cut(s)	28, 815, 840
BslI	CCNNNNNNNGG	3 cut(s)	160, 430, 596
BsmAI	GTCTC	2 cut(s)	94, 611
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	3 cut(s)	28, 815, 840
BsnI	GGCC	2 cut(s)	41, 679
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	1014
Bsp1407I	TGTACA	1 cut(s)	1101
Bsp143I	GATC	3 cut(s)	84, 568, 1225
Bsp19I	CCATGG	1 cut(s)	1041
BspACI	CCGC	5 cut(s)	243, 384, 425, 521, 1284
BspANI	GGCC	2 cut(s)	41, 679
BspCNI	CTCAG	3 cut(s)	69, 168, 1078
BspFNI	CGCG	2 cut(s)	245, 386
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	4 cut(s)	525, 828, 879, 1298
BspMAI	CTGCAG	2 cut(s)	444, 1191
BspPI	GGATC	1 cut(s)	1233
BspT104I	TTCGAA	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	1056
BsrGI	TGTACA	1 cut(s)	1101
BsrI	ACTGG	4 cut(s)	674, 698, 731, 933
BssAI	RCCGGY	1 cut(s)	1056
BssECI	CCNNGG	4 cut(s)	36, 689, 1041, 1308
BssMI	GATC	3 cut(s)	84, 568, 1225
BssSI	CACGAG	1 cut(s)	1123
BssT1I	CCWWGG	3 cut(s)	36, 1041, 1308
Bst2BI	CACGAG	1 cut(s)	1123
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	6 cut(s)	333, 381, 477, 622, 899, 1009
Bst6I	CTCTTC	2 cut(s)	2, 75
BstAUI	TGTACA	1 cut(s)	1101
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	280, 632, 840
BstDEI	CTNAG	3 cut(s)	56, 176, 1086
BstDSI	CCRYGG	1 cut(s)	1041
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	466, 502, 763
BstFNI	CGCG	2 cut(s)	245, 386
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	3 cut(s)	87, 571, 1228
BstMAI	GTCTC	2 cut(s)	94, 611
BstMBI	GATC	3 cut(s)	84, 568, 1225
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	3 cut(s)	282, 1102, 1153
BstPAI	GACNNNNGTC	1 cut(s)	1029
BstSCI	CCNGG	4 cut(s)	216, 338, 577, 1265
BstSFI	CTRYAG	2 cut(s)	440, 1187
BstUI	CGCG	2 cut(s)	245, 386
BstV1I	GCAGC	6 cut(s)	262, 334, 454, 457, 803, 1292
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	1225
BstYI	RGATCY	1 cut(s)	1225
BsuRI	GGCC	2 cut(s)	41, 679
BtgI	CCRYGG	1 cut(s)	1041
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	466, 502, 763
BtsIMutI	CAGTG	4 cut(s)	627, 667, 895, 1014
Cac8I	GCNNGC	3 cut(s)	280, 632, 840
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	1056
Cfr13I	GGNCC	4 cut(s)	523, 662, 827, 877
Csp6I	GTAC	2 cut(s)	1102, 1147
CviAII	CATG	6 cut(s)	279, 743, 1027, 1042, 1099, 1150
CviQI	GTAC	2 cut(s)	1102, 1147
DdeI	CTNAG	3 cut(s)	56, 176, 1086
DpnI	GATC	3 cut(s)	86, 570, 1227
DpnII	GATC	3 cut(s)	84, 568, 1225
Eam1104I	CTCTTC	2 cut(s)	2, 75
EarI	CTCTTC	2 cut(s)	2, 75
Eco130I	CCWWGG	3 cut(s)	36, 1041, 1308
Eco147I	AGGCCT	1 cut(s)	679
Eco47I	GGWCC	4 cut(s)	523, 662, 827, 877
Eco47III	AGCGCT	1 cut(s)	648
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	662, 877
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	3 cut(s)	36, 1041, 1308
ErhI	CCWWGG	3 cut(s)	36, 1041, 1308
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	6 cut(s)	282, 746, 1030, 1045, 1102, 1153
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	3 cut(s)	28, 815, 840
FatI	CATG	6 cut(s)	278, 742, 1026, 1041, 1098, 1149
FauI	CCCGC	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	1033
Fnu4HI	GCNGC	7 cut(s)	276, 323, 443, 446, 792, 1281, 1284
FokI	GGATG	3 cut(s)	453, 509, 770
Fsp4HI	GCNGC	7 cut(s)	276, 323, 443, 446, 792, 1281, 1284
FspBI	CTAG	2 cut(s)	644, 716
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	7 cut(s)	276, 323, 443, 446, 792, 1281, 1284
GsuI	CTGGAG	2 cut(s)	624, 691
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	41, 679
HapII	CCGG	5 cut(s)	339, 579, 923, 1057, 1267
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	6 cut(s)	282, 746, 1030, 1045, 1102, 1153
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HincII	GTYRAC	2 cut(s)	736, 870
HindII	GTYRAC	2 cut(s)	736, 870
HindIII	AAGCTT	3 cut(s)	816, 884, 1245
HinfI	GANTC	5 cut(s)	16, 32, 247, 410, 1030
HpaII	CCGG	5 cut(s)	339, 579, 923, 1057, 1267
HphI	GGTGA	3 cut(s)	91, 206, 958
Hpy166II	GTNNAC	4 cut(s)	736, 870, 1034, 1054
Hpy188I	TCNGA	7 cut(s)	59, 94, 346, 562, 690, 1087, 1202
Hpy188III	TCNNGA	5 cut(s)	470, 603, 704, 743, 859
Hpy8I	GTNNAC	4 cut(s)	736, 870, 1034, 1054
HpyAV	CCTTC	6 cut(s)	130, 249, 546, 647, 817, 1092
HpyCH4III	ACNGT	6 cut(s)	333, 381, 477, 622, 899, 1009
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	3 cut(s)	56, 176, 1086
Hsp92II	CATG	6 cut(s)	282, 746, 1030, 1045, 1102, 1153
HspAI	GCGC	1 cut(s)	647
Kzo9I	GATC	3 cut(s)	84, 568, 1225
LmnI	GCTCC	2 cut(s)	581, 1302
Lsp1109I	GCAGC	6 cut(s)	262, 334, 454, 457, 803, 1292
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	644, 716
MalI	GATC	3 cut(s)	86, 570, 1227
MboI	GATC	3 cut(s)	84, 568, 1225
MboII	GAAGA	7 cut(s)	16, 19, 41, 92, 181, 405, 412
MfeI	CAATTG	1 cut(s)	1111
MflI	RGATCY	1 cut(s)	1225
MhlI	GDGCHC	1 cut(s)	1014
MluCI	AATT	5 cut(s)	259, 403, 948, 990, 1111
MlyI	GAGTC	2 cut(s)	10, 1039
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	4 cut(s)	375, 399, 1137, 1221
MslI	CAYNNNNRTG	1 cut(s)	1097
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	5 cut(s)	339, 579, 923, 1057, 1267
MspR9I	CCNGG	4 cut(s)	218, 340, 579, 1267
MunI	CAATTG	1 cut(s)	1111
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	2 cut(s)	245, 386
MwoI	GCNNNNNNNGC	1 cut(s)	631
NciI	CCSGG	3 cut(s)	340, 579, 1267
NcoI	CCATGG	1 cut(s)	1041
NdeII	GATC	3 cut(s)	84, 568, 1225
NlaIII	CATG	6 cut(s)	282, 746, 1030, 1045, 1102, 1153
NlaIV	GGNNCC	4 cut(s)	525, 828, 879, 1298
NspI	RCATGY	3 cut(s)	282, 1102, 1153
NspV	TTCGAA	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	282
PagI	TCATGA	1 cut(s)	742
PceI	AGGCCT	1 cut(s)	679
PciI	ACATGT	1 cut(s)	1098
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	32, 247, 410
PfoI	TCCNGGA	1 cut(s)	1265
PkrI	GCNGC	7 cut(s)	277, 324, 444, 447, 793, 1282, 1285
PleI	GAGTC	2 cut(s)	10, 1038
PpsI	GAGTC	2 cut(s)	10, 1038
PpuMI	RGGWCCY	2 cut(s)	662, 877
PscI	ACATGT	1 cut(s)	1098
PshAI	GACNNNNGTC	1 cut(s)	1029
PsiI	TTATAA	2 cut(s)	269, 1214
Psp5II	RGGWCCY	2 cut(s)	662, 877
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	525, 828, 879, 1298
PspPI	GGNCC	4 cut(s)	523, 662, 827, 877
PspPPI	RGGWCCY	2 cut(s)	662, 877
PstI	CTGCAG	2 cut(s)	444, 1191
PsuI	RGATCY	1 cut(s)	1225
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	2 cut(s)	1103, 1148
RsaNI	GTAC	2 cut(s)	1102, 1147
RseI	CAYNNNNRTG	1 cut(s)	1097
SaqAI	TTAA	4 cut(s)	375, 399, 1137, 1221
SatI	GCNGC	7 cut(s)	276, 323, 443, 446, 792, 1281, 1284
Sau3AI	GATC	3 cut(s)	84, 568, 1225
Sau96I	GGNCC	4 cut(s)	523, 662, 827, 877
SchI	GAGTC	2 cut(s)	10, 1039
ScrFI	CCNGG	4 cut(s)	218, 340, 579, 1267
SduI	GDGCHC	1 cut(s)	1014
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	2 cut(s)	440, 1187
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	4 cut(s)	523, 662, 827, 877
SmiMI	CAYNNNNRTG	1 cut(s)	1097
SpeI	ACTAGT	1 cut(s)	715
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	5 cut(s)	259, 403, 948, 990, 1111
SseBI	AGGCCT	1 cut(s)	679
SsiI	CCGC	5 cut(s)	243, 384, 425, 521, 1284
SspI	AATATT	1 cut(s)	1001
SspMI	CTAG	2 cut(s)	644, 716
StuI	AGGCCT	1 cut(s)	679
StyD4I	CCNGG	4 cut(s)	216, 338, 577, 1265
StyI	CCWWGG	3 cut(s)	36, 1041, 1308
TaaI	ACNGT	6 cut(s)	333, 381, 477, 622, 899, 1009
TaqI	TCGA	2 cut(s)	27, 78
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	5 cut(s)	259, 403, 948, 990, 1111
TatI	WGTACW	2 cut(s)	1101, 1146
TauI	GCSGC	1 cut(s)	1286
TfiI	GAWTC	3 cut(s)	32, 247, 410
Tru1I	TTAA	4 cut(s)	375, 399, 1137, 1221
Tru9I	TTAA	4 cut(s)	375, 399, 1137, 1221
TscAI	CASTG	4 cut(s)	627, 674, 902, 1014
TseI	GCWGC	6 cut(s)	275, 322, 442, 445, 791, 1280
TspDTI	ATGAA	7 cut(s)	17, 118, 244, 726, 759, 1081, 1222
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	4 cut(s)	627, 674, 902, 1014
VpaK11BI	GGWCC	4 cut(s)	523, 662, 827, 877
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	259, 403
XceI	RCATGY	3 cut(s)	282, 1102, 1153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	644, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.