Rh7CG233600

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006134
Physical Location & Seq
Forward (+)
21802384 .. 21807726
5343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG233600.1

Sequence Viewer

Length: 1323 bp
ATGAAGAAGAGGGGGACTTTGGGGTTCGAAGATTCCAAGGCCGTGTTTGGACTGCTCAGAGCAGAGCAACGACCACTCGAAGAGATCGTCTCCGACTTCACCTCTATTTTCTCTCACGCCTTCCATTTCATTCCTTGCTTCTCCCTCTCCCTCCTCTTACAGGATAAGAAGATGCTGAGTTCCACCCAACGCTTGATTGCATTTGCTTTACTTCACCAGGCTTATGCTTCCCAGAAACCTTCCGCGAATCCGTTCATAAATTTGATCATAAGTGCTGCATGCGATGTTGAAGCTGAAAAATGCGAGAGGGCATTTGTTCTGCAGCTATTACAGTTATCCGGGTCTGATGGCTCTAATAGTGGCAAAGAGCTTCTTAAACAGTCTGCGACAGATTACATTAAAAATTTTGATTCTTCGGTGCATGTCTTCCCGCAACAGGAACATCTGCAGCAGCAGTATGCAGATAAAGTCCATCCAGAACCATATAGTTCTCCATTCAAGGATGGTTCTATCAAAAATGTGGTAGCGGACCCTGATGTTCCTTCTGGTTGTGATAGCAACTCATCAGAGTTTGATCTACAACCCGGAGCAAAACCTAAAGTCGGTTCTGGAGATAAAGATGAGACAGTGCTTGGCTTGCTGTCCAATCTAGCGCTGGAAGGATTAGGTCCTCACTGGAGTAGGCCTATTCCTCCGAGGCTTCCAGTTCAGGACGATGAACTAGTGTGGCTCAACCCAGTTGACAATCATGAACTTTTATGGGATGATGGTATGTGTGTTGATACCAGCAGAGGTGCAGCTGTAAGGGACTTGATTGCAAAAGCTTTGAAGGGACCACTTGTGCCTGCACAACAAGAGCAAGTCGTGATGGAGTTGACAAAGGACCCGAAGCTTGTATATCACTGTGGGCTGACACCAAGAAAGCTACCGGAACTGGTGGAAAATAATCCCCTAATTGCAGTTGAAGTTCTCACCAAGTTGATAAACTCCCCTGAAATTGCAGAATATTTTACAGTGCTCGTCAATATGGACATGAGTCTACACTCCATGGAAGTTGTGAACCGGCTTACGACAGCCGTTGAACTTCCTTCTGAGTTCATACACATGTACATAACCAATTGTATATCCTCGTGTGAGAACATTAAGGACAAGTACATGCAGAACAGACTTGTGAGGCTTGTTTGTGTATTTCTGCAGAGCCTTATCCGAAACAACATTATAAATGTTAAGGATCTTTTCATTGAAGTTCAAGCTTTTTGCATTGAGTTCTCCCGGATTAGAGAAGCAGCTGCACTCTTTAGGCTCCTAAAATCCTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2363

Protein Analysis

440

Amino Acids

49.18

Weight (kDa)

5.4

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNOT11 PF10155 313 - 437 9e-54 CCR4-NOT transcription complex subunit 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1220
AccI GTMKAC 1 cut(s) 1039
AccII CGCG 1 cut(s) 245
AciI CCGC 3 cut(s) 243, 431, 527
AclWI GGATC 1 cut(s) 1239
AcsI RAATTY 2 cut(s) 259, 403
AfaI GTAC 2 cut(s) 1109, 1154
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 3 cut(s) 160, 436, 602
AflIII ACRYGT 1 cut(s) 1104
AgsI TTSAA 7 cut(s) 290, 499, 829, 965, 1082, 1244, 1250
AhlI ACTAGT 1 cut(s) 721
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 9 cut(s) 293, 325, 370, 800, 824, 892, 925, 1253, 1289
AluI AGCT 9 cut(s) 293, 325, 370, 800, 824, 892, 925, 1253, 1289
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 2 cut(s) 94, 617
AlwI GGATC 1 cut(s) 1239
Aor51HI AGCGCT 1 cut(s) 654
AoxI GGCC 2 cut(s) 39, 683
ApeKI GCWGC 7 cut(s) 275, 322, 448, 451, 797, 1286, 1289
ApoI RAATTY 2 cut(s) 259, 403
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 4 cut(s) 529, 668, 833, 883
AsuC2I CCSGG 3 cut(s) 340, 585, 1273
AsuHPI GGTGA 3 cut(s) 91, 206, 964
AsuII TTCGAA 1 cut(s) 27
AvaII GGWCC 4 cut(s) 529, 668, 833, 883
BauI CACGAG 1 cut(s) 1129
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 7 cut(s) 262, 334, 460, 463, 809, 1276, 1298
BccI CCATC 5 cut(s) 341, 480, 497, 761, 862
BceAI ACGGC 2 cut(s) 26, 1061
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 3 cut(s) 340, 585, 1273
BcoDI GTCTC 2 cut(s) 94, 617
BcuI ACTAGT 1 cut(s) 721
BfaI CTAG 2 cut(s) 650, 722
BfmI CTRYAG 3 cut(s) 320, 446, 1193
BfoI RGCGCY 1 cut(s) 656
BisI GCNGC 7 cut(s) 276, 323, 449, 452, 798, 1287, 1290
BlsI GCNGC 7 cut(s) 277, 324, 450, 453, 799, 1288, 1291
Bme1390I CCNGG 4 cut(s) 218, 340, 585, 1273
Bme18I GGWCC 4 cut(s) 529, 668, 833, 883
BmgT120I GGNCC 4 cut(s) 529, 668, 833, 883
BmiI GGNNCC 4 cut(s) 531, 834, 885, 1304
BmrFI CCNGG 4 cut(s) 218, 340, 585, 1273
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 731
BoxI GACNNNNGTC 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 418
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 2 cut(s) 630, 697
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 3 cut(s) 340, 585, 1273
BsaJI CCNNGG 4 cut(s) 36, 695, 1047, 1314
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 436, 602
Bse118I RCCGGY 1 cut(s) 1062
Bse1I ACTGG 4 cut(s) 680, 704, 737, 939
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 4 cut(s) 36, 695, 1047, 1314
BseGI GGATG 3 cut(s) 472, 508, 769
BseLI CCNNNNNNNGG 3 cut(s) 160, 436, 602
BseMII CTCAG 3 cut(s) 70, 167, 1083
BseNI ACTGG 4 cut(s) 680, 704, 737, 939
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 7 cut(s) 262, 334, 460, 463, 809, 1276, 1298
BsgI GTGCAG 3 cut(s) 816, 831, 1275
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 2 cut(s) 41, 685
BsiHKAI GWGCWC 1 cut(s) 1020
BsiSI CCGG 5 cut(s) 339, 585, 929, 1063, 1273
BslFI GGGAC 3 cut(s) 28, 821, 846
BslI CCNNNNNNNGG 3 cut(s) 160, 436, 602
BsmAI GTCTC 2 cut(s) 94, 617
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 3 cut(s) 28, 821, 846
BsnI GGCC 2 cut(s) 41, 685
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp1407I TGTACA 1 cut(s) 1107
Bsp143I GATC 4 cut(s) 84, 264, 574, 1231
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 3 cut(s) 243, 431, 527
BspANI GGCC 2 cut(s) 41, 685
BspCNI CTCAG 3 cut(s) 69, 168, 1084
BspFNI CGCG 1 cut(s) 245
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 4 cut(s) 531, 834, 885, 1304
BspMAI CTGCAG 3 cut(s) 324, 450, 1197
BspPI GGATC 1 cut(s) 1239
BspT104I TTCGAA 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 1062
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 4 cut(s) 680, 704, 737, 939
BssAI RCCGGY 1 cut(s) 1062
BssECI CCNNGG 4 cut(s) 36, 695, 1047, 1314
BssMI GATC 4 cut(s) 84, 264, 574, 1231
BssSI CACGAG 1 cut(s) 1129
BssT1I CCWWGG 3 cut(s) 36, 1047, 1314
Bst2BI CACGAG 1 cut(s) 1129
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 5 cut(s) 333, 381, 628, 905, 1015
Bst6I CTCTTC 2 cut(s) 2, 75
BstAUI TGTACA 1 cut(s) 1107
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 280, 638, 846
BstDEI CTNAG 3 cut(s) 56, 176, 1092
BstDSI CCRYGG 1 cut(s) 1047
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 3 cut(s) 472, 508, 769
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 4 cut(s) 87, 267, 577, 1234
BstMAI GTCTC 2 cut(s) 94, 617
BstMBI GATC 4 cut(s) 84, 264, 574, 1231
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 4 cut(s) 282, 425, 1108, 1159
BstPAI GACNNNNGTC 1 cut(s) 1035
BstSCI CCNGG 4 cut(s) 216, 338, 583, 1271
BstSFI CTRYAG 3 cut(s) 320, 446, 1193
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 7 cut(s) 262, 334, 460, 463, 809, 1276, 1298
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 1231
BstYI RGATCY 1 cut(s) 1231
BsuRI GGCC 2 cut(s) 41, 685
BtgI CCRYGG 1 cut(s) 1047
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 472, 508, 769
BtsIMutI CAGTG 4 cut(s) 633, 673, 901, 1020
Cac8I GCNNGC 3 cut(s) 280, 638, 846
CciI TCATGA 1 cut(s) 748
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 1 cut(s) 1062
Cfr13I GGNCC 4 cut(s) 529, 668, 833, 883
Csp6I GTAC 2 cut(s) 1108, 1153
CviAII CATG 7 cut(s) 279, 422, 749, 1033, 1048, 1105, 1156
CviQI GTAC 2 cut(s) 1108, 1153
DdeI CTNAG 3 cut(s) 56, 176, 1092
DpnI GATC 4 cut(s) 86, 266, 576, 1233
DpnII GATC 4 cut(s) 84, 264, 574, 1231
Eam1104I CTCTTC 2 cut(s) 2, 75
EarI CTCTTC 2 cut(s) 2, 75
Eco130I CCWWGG 3 cut(s) 36, 1047, 1314
Eco147I AGGCCT 1 cut(s) 685
Eco47I GGWCC 4 cut(s) 529, 668, 833, 883
Eco47III AGCGCT 1 cut(s) 654
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 2 cut(s) 668, 883
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 3 cut(s) 36, 1047, 1314
ErhI CCWWGG 3 cut(s) 36, 1047, 1314
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 7 cut(s) 282, 425, 752, 1036, 1051, 1108, 1159
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 3 cut(s) 28, 821, 846
FatI CATG 7 cut(s) 278, 421, 748, 1032, 1047, 1104, 1155
FauI CCCGC 1 cut(s) 438
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 7 cut(s) 276, 323, 449, 452, 798, 1287, 1290
FokI GGATG 3 cut(s) 459, 515, 776
Fsp4HI GCNGC 7 cut(s) 276, 323, 449, 452, 798, 1287, 1290
FspBI CTAG 2 cut(s) 650, 722
GlaI GCGC 1 cut(s) 654
GluI GCNGC 7 cut(s) 276, 323, 449, 452, 798, 1287, 1290
GsuI CTGGAG 2 cut(s) 630, 697
HaeII RGCGCY 1 cut(s) 656
HaeIII GGCC 2 cut(s) 41, 685
HapII CCGG 5 cut(s) 339, 585, 929, 1063, 1273
HhaI GCGC 1 cut(s) 655
Hin1II CATG 7 cut(s) 282, 425, 752, 1036, 1051, 1108, 1159
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 2 cut(s) 742, 876
HindII GTYRAC 2 cut(s) 742, 876
HindIII AAGCTT 3 cut(s) 822, 890, 1251
HinfI GANTC 4 cut(s) 32, 247, 410, 1036
HpaII CCGG 5 cut(s) 339, 585, 929, 1063, 1273
HphI GGTGA 3 cut(s) 91, 206, 964
Hpy166II GTNNAC 4 cut(s) 742, 876, 1040, 1060
Hpy188I TCNGA 7 cut(s) 59, 94, 346, 568, 696, 1093, 1208
Hpy188III TCNNGA 5 cut(s) 476, 609, 710, 749, 865
Hpy8I GTNNAC 4 cut(s) 742, 876, 1040, 1060
HpyAV CCTTC 6 cut(s) 130, 249, 552, 653, 823, 1098
HpyCH4III ACNGT 5 cut(s) 333, 381, 628, 905, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 3 cut(s) 56, 176, 1092
Hsp92II CATG 7 cut(s) 282, 425, 752, 1036, 1051, 1108, 1159
HspAI GCGC 1 cut(s) 653
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 4 cut(s) 84, 264, 574, 1231
LmnI GCTCC 2 cut(s) 587, 1308
Lsp1109I GCAGC 7 cut(s) 262, 334, 460, 463, 809, 1276, 1298
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 650, 722
MalI GATC 4 cut(s) 86, 266, 576, 1233
MboI GATC 4 cut(s) 84, 264, 574, 1231
MboII GAAGA 7 cut(s) 16, 19, 41, 92, 181, 405, 418
MfeI CAATTG 1 cut(s) 1117
MflI RGATCY 1 cut(s) 1231
MhlI GDGCHC 1 cut(s) 1020
MluCI AATT 5 cut(s) 259, 403, 954, 996, 1117
MlyI GAGTC 1 cut(s) 1045
MmeI TCCRAC 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 4 cut(s) 375, 399, 1143, 1227
MslI CAYNNNNRTG 1 cut(s) 1103
MspA1I CMGCKG 2 cut(s) 800, 1289
MspI CCGG 5 cut(s) 339, 585, 929, 1063, 1273
MspR9I CCNGG 4 cut(s) 218, 340, 585, 1273
MunI CAATTG 1 cut(s) 1117
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 637
NciI CCSGG 3 cut(s) 340, 585, 1273
NcoI CCATGG 1 cut(s) 1047
NdeII GATC 4 cut(s) 84, 264, 574, 1231
NlaIII CATG 7 cut(s) 282, 425, 752, 1036, 1051, 1108, 1159
NlaIV GGNNCC 4 cut(s) 531, 834, 885, 1304
NspI RCATGY 4 cut(s) 282, 425, 1108, 1159
NspV TTCGAA 1 cut(s) 27
PaeI GCATGC 1 cut(s) 282
PagI TCATGA 1 cut(s) 748
PceI AGGCCT 1 cut(s) 685
PciI ACATGT 1 cut(s) 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 32, 247, 410
PfoI TCCNGGA 1 cut(s) 1271
PkrI GCNGC 7 cut(s) 277, 324, 450, 453, 799, 1288, 1291
PleI GAGTC 1 cut(s) 1044
PpsI GAGTC 1 cut(s) 1044
PpuMI RGGWCCY 2 cut(s) 668, 883
PscI ACATGT 1 cut(s) 1104
PshAI GACNNNNGTC 1 cut(s) 1035
PsiI TTATAA 1 cut(s) 1220
Psp5II RGGWCCY 2 cut(s) 668, 883
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 4 cut(s) 531, 834, 885, 1304
PspPI GGNCC 4 cut(s) 529, 668, 833, 883
PspPPI RGGWCCY 2 cut(s) 668, 883
PstI CTGCAG 3 cut(s) 324, 450, 1197
PsuI RGATCY 1 cut(s) 1231
PvuII CAGCTG 2 cut(s) 800, 1289
RsaI GTAC 2 cut(s) 1109, 1154
RsaNI GTAC 2 cut(s) 1108, 1153
RseI CAYNNNNRTG 1 cut(s) 1103
SaqAI TTAA 4 cut(s) 375, 399, 1143, 1227
SatI GCNGC 7 cut(s) 276, 323, 449, 452, 798, 1287, 1290
Sau3AI GATC 4 cut(s) 84, 264, 574, 1231
Sau96I GGNCC 4 cut(s) 529, 668, 833, 883
SchI GAGTC 1 cut(s) 1045
ScrFI CCNGG 4 cut(s) 218, 340, 585, 1273
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 3 cut(s) 320, 446, 1193
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 4 cut(s) 529, 668, 833, 883
SmiMI CAYNNNNRTG 1 cut(s) 1103
SpeI ACTAGT 1 cut(s) 721
SphI GCATGC 1 cut(s) 282
Sse9I AATT 5 cut(s) 259, 403, 954, 996, 1117
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 3 cut(s) 243, 431, 527
SspI AATATT 1 cut(s) 1007
SspMI CTAG 2 cut(s) 650, 722
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 4 cut(s) 216, 338, 583, 1271
StyI CCWWGG 3 cut(s) 36, 1047, 1314
TaaI ACNGT 5 cut(s) 333, 381, 628, 905, 1015
TaqI TCGA 2 cut(s) 27, 78
TasI AATT 5 cut(s) 259, 403, 954, 996, 1117
TatI WGTACW 2 cut(s) 1107, 1152
TfiI GAWTC 3 cut(s) 32, 247, 410
Tru1I TTAA 4 cut(s) 375, 399, 1143, 1227
Tru9I TTAA 4 cut(s) 375, 399, 1143, 1227
TscAI CASTG 4 cut(s) 633, 680, 908, 1020
TseI GCWGC 7 cut(s) 275, 322, 448, 451, 797, 1286, 1289
TspDTI ATGAA 7 cut(s) 17, 118, 244, 732, 765, 1087, 1228
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 4 cut(s) 633, 680, 908, 1020
VpaK11BI GGWCC 4 cut(s) 529, 668, 833, 883
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 2 cut(s) 259, 403
XceI RCATGY 4 cut(s) 282, 425, 1108, 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 1039
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 650, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.