FvH4_5g20280

CCR4-NOT transcription complex subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
11979582 .. 11984762
5181 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20280.t2

Sequence Viewer

Length: 1323 bp
ATGAAGAAGAGGGCGACGCTGGGATTCGAAGATTCCAAGGCCGTGTTTGGACTCCTCCGAGCAGAGCAACGACCACTCGAAGAGATCGTCTCCGACTTCGCCTCTATTTTCTCCCATGGCCGCCAATTCATTCCCTCCTTCTCCCTCTCCGTTCTCTTACAGGATAAGAAGATGCTGAGTTCCACCCAACGCTTGATTGCATTTGCTATACTTCACCAGGCTTACGCTTCCCAGAAACCGTCCGCAAATCCGTTCATTAATTTGATCATCAGCGCCGCATGCGATGTTGAAGCTGAAAAATGTGAGAGGGCATTTGTTCTTCAGCTATTACAGCTATTCGGGTCTGATGGCTCTAACAATGGCAAAGAGTTTCTTAAACAGTCCGCTGCAGATTACATTAAAAACTTTGATCCTTCGGTGCATGTTTTTCCGCAACAGGAACAGTTGCAGCAGCAGTATGCAGATAAAGGCCATCCAGAACCATATAGTTCTCCATTCAAGGATGGTTCTATCAAAAATGTGGTAGCAGACCCTGATGTTCCTCGTGGTTGCGATGCCAACTCATCAGAGTTTGATCTACAACCCGGAGCAAAATCTAAAGTCGGTTCTGGAGATAAAGATGAGACAATGCTTGGCTTGTTGTCCAATATAGCACTGGAAGGATTAGGTCCTCACTGGAGCAGGCCTATTCCTCCGAGGCTCCCAGTTCAGGACGATGAACTGGTGTGGCTCAACCCAGTCGACAATCATGAACTTTTATGGGATGATGGTATGTGTGTTGATACAAGCAGAGGTGCCGCTGTACGGGACCTAATAGCTAAAGCTTTGAAGGGACCACTTGTGCCTGCACAACAAGAGCAAGTCTTGTTGGAGTTGGCAAATGACCCGAAACTTGTATATCACTGTGGGCTGACACCAAGAAAGCTACCGGAATTGGTGGAAAATAATCCCCTTATTGCGGTTGAAGTTCTCACCAAGTTGATAAACTCTCCTGAAATTGCTGAATATTTTACAGTGCTCGTCAATATGGACATGAGTCTACACTCCATGGAAGTTGTGAACAGGCTAACAACAGCTGTTGAACTTCCTTCCGAGTTCATACACATGTACATAACCAATTGTATATCTTCATGTGAGAACATCAAGGACAAGTACATGCAGAACAGACTAGTGAGGCTTGTTTGTGTATTTCTGCAGAGCCTTATCCGAAACAACATTATAAATGTTAAGGATCTCTTCATTGAAGTCCAAGCGTTTTGCATCGAGTTCTCCCGCATTAGAGAAGCAGCTGCACTCTTTAGGCTCCTAAAGTCCTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

49.2

Weight (kDa)

5.35

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1220
AccB1I GGYRCC 1 cut(s) 794
AccI GTMKAC 2 cut(s) 741, 1039
AciI CCGC 8 cut(s) 121, 243, 276, 384, 431, 798, 959, 1273
AclWI GGATC 2 cut(s) 404, 1239
AcoI YGGCCR 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 3 cut(s) 804, 1109, 1154
AfiI CCNNNNNNNGG 3 cut(s) 709, 804, 958
AflIII ACRYGT 1 cut(s) 1104
AgsI TTSAA 6 cut(s) 290, 499, 829, 965, 1082, 1244
AhlI ACTAGT 1 cut(s) 1168
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 8 cut(s) 293, 325, 334, 818, 824, 925, 1076, 1289
AluI AGCT 8 cut(s) 293, 325, 334, 818, 824, 925, 1076, 1289
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 2 cut(s) 94, 617
AlwI GGATC 2 cut(s) 404, 1239
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 4 cut(s) 39, 118, 469, 683
ApeKI GCWGC 5 cut(s) 386, 448, 451, 1286, 1289
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AseI ATTAAT 1 cut(s) 258
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 668, 808, 833
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 2 cut(s) 206, 964
AsuII TTCGAA 1 cut(s) 27
AvaII GGWCC 3 cut(s) 668, 808, 833
BanI GGYRCC 1 cut(s) 794
BauI CACGAG 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 5 cut(s) 373, 460, 463, 1276, 1298
BccI CCATC 4 cut(s) 341, 480, 497, 761
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 2 cut(s) 94, 617
BcuI ACTAGT 1 cut(s) 1168
BfaI CTAG 1 cut(s) 1169
BfmI CTRYAG 2 cut(s) 387, 1193
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
BlsI GCNGC 8 cut(s) 122, 277, 388, 450, 453, 799, 1288, 1291
Bme1390I CCNGG 2 cut(s) 218, 585
Bme18I GGWCC 3 cut(s) 668, 808, 833
BmgT120I GGNCC 3 cut(s) 668, 808, 833
BmiI GGNNCC 5 cut(s) 701, 796, 809, 834, 1304
BmrFI CCNGG 2 cut(s) 218, 585
BmrI ACTGGG 2 cut(s) 698, 731
BmsI GCATC 3 cut(s) 162, 544, 1269
BmuI ACTGGG 2 cut(s) 698, 731
BoxI GACNNNNGTC 1 cut(s) 1035
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 2 cut(s) 630, 697
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 5 cut(s) 36, 115, 695, 1047, 1314
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 3 cut(s) 709, 804, 958
Bse1I ACTGG 5 cut(s) 660, 680, 704, 726, 737
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 5 cut(s) 36, 115, 695, 1047, 1314
BseGI GGATG 3 cut(s) 472, 508, 769
BseLI CCNNNNNNNGG 3 cut(s) 709, 804, 958
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 5 cut(s) 660, 680, 704, 726, 737
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 5 cut(s) 373, 460, 463, 1276, 1298
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 2 cut(s) 831, 1275
BshFI GGCC 4 cut(s) 41, 120, 471, 685
BshNI GGYRCC 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 1020
BsiSI CCGG 2 cut(s) 585, 929
BslFI GGGAC 2 cut(s) 821, 846
BslI CCNNNNNNNGG 3 cut(s) 709, 804, 958
BsmAI GTCTC 2 cut(s) 94, 617
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 821, 846
BsnI GGCC 4 cut(s) 41, 120, 471, 685
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp1407I TGTACA 1 cut(s) 1107
Bsp143I GATC 5 cut(s) 84, 264, 409, 574, 1231
Bsp19I CCATGG 2 cut(s) 115, 1047
BspACI CCGC 8 cut(s) 121, 243, 276, 384, 431, 798, 959, 1273
BspANI GGCC 4 cut(s) 41, 120, 471, 685
BspCNI CTCAG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 5 cut(s) 701, 796, 809, 834, 1304
BspMAI CTGCAG 2 cut(s) 391, 1197
BspPI GGATC 2 cut(s) 404, 1239
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 794
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 5 cut(s) 660, 680, 704, 726, 737
BssECI CCNNGG 5 cut(s) 36, 115, 695, 1047, 1314
BssMI GATC 5 cut(s) 84, 264, 409, 574, 1231
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 4 cut(s) 36, 115, 1047, 1314
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 5 cut(s) 240, 381, 444, 905, 1015
Bst6I CTCTTC 3 cut(s) 2, 75, 1241
BstAUI TGTACA 1 cut(s) 1107
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 280, 683, 846
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 2 cut(s) 115, 1047
BstF5I GGATG 3 cut(s) 472, 508, 769
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 5 cut(s) 87, 267, 412, 577, 1234
BstMAI GTCTC 2 cut(s) 94, 617
BstMBI GATC 5 cut(s) 84, 264, 409, 574, 1231
BstMWI GCNNNNNNNGC 2 cut(s) 279, 331
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 4 cut(s) 282, 425, 1108, 1159
BstPAI GACNNNNGTC 1 cut(s) 1035
BstSCI CCNGG 2 cut(s) 216, 583
BstSFI CTRYAG 2 cut(s) 387, 1193
BstV1I GCAGC 5 cut(s) 373, 460, 463, 1276, 1298
BstX2I RGATCY 1 cut(s) 1231
BstYI RGATCY 1 cut(s) 1231
BsuRI GGCC 4 cut(s) 41, 120, 471, 685
BtgI CCRYGG 2 cut(s) 115, 1047
BtgZI GCGATG 2 cut(s) 297, 567
BtsCI GGATG 3 cut(s) 472, 508, 769
BtsIMutI CAGTG 4 cut(s) 653, 673, 901, 1020
Cac8I GCNNGC 3 cut(s) 280, 683, 846
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 748
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 3 cut(s) 668, 808, 833
CseI GACGC 1 cut(s) 25
Csp6I GTAC 3 cut(s) 803, 1108, 1153
CviAII CATG 9 cut(s) 116, 279, 422, 749, 1033, 1048, 1105, 1131, 1156
CviQI GTAC 3 cut(s) 803, 1108, 1153
DdeI CTNAG 1 cut(s) 176
DpnI GATC 5 cut(s) 86, 266, 411, 576, 1233
DpnII GATC 5 cut(s) 84, 264, 409, 574, 1231
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 3 cut(s) 2, 75, 1241
EarI CTCTTC 3 cut(s) 2, 75, 1241
Eco130I CCWWGG 4 cut(s) 36, 115, 1047, 1314
Eco147I AGGCCT 1 cut(s) 685
Eco47I GGWCC 3 cut(s) 668, 808, 833
Eco57I CTGAAG 1 cut(s) 305
EcoO109I RGGNCCY 2 cut(s) 668, 808
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 4 cut(s) 36, 115, 1047, 1314
ErhI CCWWGG 4 cut(s) 36, 115, 1047, 1314
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 9 cut(s) 119, 282, 425, 752, 1036, 1051, 1108, 1134, 1159
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 1220, 1252
FaqI GGGAC 2 cut(s) 821, 846
FatI CATG 9 cut(s) 115, 278, 421, 748, 1032, 1047, 1104, 1130, 1155
FauI CCCGC 1 cut(s) 1280
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 2 cut(s) 741, 1039
Fnu4HI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
FokI GGATG 3 cut(s) 459, 515, 776
Fsp4HI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
FspBI CTAG 1 cut(s) 1169
GlaI GCGC 1 cut(s) 274
GluI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 2 cut(s) 630, 697
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 4 cut(s) 41, 120, 471, 685
HapII CCGG 2 cut(s) 585, 929
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 275
Hin1II CATG 9 cut(s) 119, 282, 425, 752, 1036, 1051, 1108, 1134, 1159
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 4 cut(s) 24, 32, 51, 1036
HpaII CCGG 2 cut(s) 585, 929
HphI GGTGA 2 cut(s) 206, 964
Hpy166II GTNNAC 3 cut(s) 742, 1040, 1060
Hpy188I TCNGA 7 cut(s) 59, 94, 346, 568, 696, 1093, 1208
Hpy188III TCNNGA 5 cut(s) 476, 609, 710, 749, 992
Hpy8I GTNNAC 3 cut(s) 742, 1040, 1060
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 5 cut(s) 148, 423, 653, 823, 1098
HpyCH4III ACNGT 5 cut(s) 240, 381, 444, 905, 1015
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 331
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 9 cut(s) 119, 282, 425, 752, 1036, 1051, 1108, 1134, 1159
HspAI GCGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 5 cut(s) 84, 264, 409, 574, 1231
LmnI GCTCC 4 cut(s) 587, 678, 705, 1308
Lsp1109I GCAGC 5 cut(s) 373, 460, 463, 1276, 1298
LweI GCATC 3 cut(s) 162, 544, 1269
MaeI CTAG 1 cut(s) 1169
MalI GATC 5 cut(s) 86, 266, 411, 576, 1233
MboI GATC 5 cut(s) 84, 264, 409, 574, 1231
MboII GAAGA 8 cut(s) 16, 19, 41, 92, 181, 311, 1119, 1228
MfeI CAATTG 1 cut(s) 1117
MflI RGATCY 1 cut(s) 1231
MhlI GDGCHC 1 cut(s) 1020
MluCI AATT 5 cut(s) 125, 259, 932, 996, 1117
MlyI GAGTC 2 cut(s) 45, 1045
MmeI TCCRAC 2 cut(s) 117, 849
MseI TTAA 4 cut(s) 258, 375, 399, 1227
MslI CAYNNNNRTG 1 cut(s) 1103
MspA1I CMGCKG 4 cut(s) 386, 800, 1076, 1289
MspI CCGG 2 cut(s) 585, 929
MspR9I CCNGG 2 cut(s) 218, 585
MunI CAATTG 1 cut(s) 1117
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 279, 331
NciI CCSGG 1 cut(s) 585
NcoI CCATGG 2 cut(s) 115, 1047
NdeII GATC 5 cut(s) 84, 264, 409, 574, 1231
NlaIII CATG 9 cut(s) 119, 282, 425, 752, 1036, 1051, 1108, 1134, 1159
NlaIV GGNNCC 5 cut(s) 701, 796, 809, 834, 1304
NspI RCATGY 4 cut(s) 282, 425, 1108, 1159
NspV TTCGAA 1 cut(s) 27
PaeI GCATGC 1 cut(s) 282
PagI TCATGA 1 cut(s) 748
PceI AGGCCT 1 cut(s) 685
PciI ACATGT 1 cut(s) 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 2 cut(s) 24, 32
PkrI GCNGC 8 cut(s) 122, 277, 388, 450, 453, 799, 1288, 1291
PleI GAGTC 2 cut(s) 45, 1044
PpsI GAGTC 2 cut(s) 45, 1044
PpuMI RGGWCCY 2 cut(s) 668, 808
PscI ACATGT 1 cut(s) 1104
PshAI GACNNNNGTC 1 cut(s) 1035
PshBI ATTAAT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 1220
Psp5II RGGWCCY 2 cut(s) 668, 808
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 5 cut(s) 701, 796, 809, 834, 1304
PspPI GGNCC 3 cut(s) 668, 808, 833
PspPPI RGGWCCY 2 cut(s) 668, 808
PstI CTGCAG 2 cut(s) 391, 1197
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 1 cut(s) 1231
PvuII CAGCTG 2 cut(s) 1076, 1289
RsaI GTAC 3 cut(s) 804, 1109, 1154
RsaNI GTAC 3 cut(s) 803, 1108, 1153
RseI CAYNNNNRTG 1 cut(s) 1103
SalI GTCGAC 1 cut(s) 740
SaqAI TTAA 4 cut(s) 258, 375, 399, 1227
SatI GCNGC 8 cut(s) 121, 276, 387, 449, 452, 798, 1287, 1290
Sau3AI GATC 5 cut(s) 84, 264, 409, 574, 1231
Sau96I GGNCC 3 cut(s) 668, 808, 833
SchI GAGTC 2 cut(s) 45, 1045
ScrFI CCNGG 2 cut(s) 218, 585
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 3 cut(s) 162, 544, 1269
SfcI CTRYAG 2 cut(s) 387, 1193
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 3 cut(s) 668, 808, 833
SmiMI CAYNNNNRTG 1 cut(s) 1103
SpeI ACTAGT 1 cut(s) 1168
SphI GCATGC 1 cut(s) 282
Sse9I AATT 5 cut(s) 125, 259, 932, 996, 1117
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 8 cut(s) 121, 243, 276, 384, 431, 798, 959, 1273
SspI AATATT 1 cut(s) 1007
SspMI CTAG 1 cut(s) 1169
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 2 cut(s) 216, 583
StyI CCWWGG 4 cut(s) 36, 115, 1047, 1314
TaaI ACNGT 5 cut(s) 240, 381, 444, 905, 1015
TaqI TCGA 4 cut(s) 27, 78, 741, 1263
TasI AATT 5 cut(s) 125, 259, 932, 996, 1117
TatI WGTACW 2 cut(s) 1107, 1152
TauI GCSGC 3 cut(s) 123, 278, 800
TfiI GAWTC 2 cut(s) 24, 32
Tru1I TTAA 4 cut(s) 258, 375, 399, 1227
Tru9I TTAA 4 cut(s) 258, 375, 399, 1227
TscAI CASTG 4 cut(s) 660, 680, 908, 1020
TseI GCWGC 5 cut(s) 386, 448, 451, 1286, 1289
TspDTI ATGAA 8 cut(s) 17, 118, 244, 732, 765, 1087, 1119, 1228
TspGWI ACGGA 2 cut(s) 139, 240
TspRI CASTG 4 cut(s) 660, 680, 908, 1020
VpaK11BI GGWCC 3 cut(s) 668, 808, 833
VspI ATTAAT 1 cut(s) 258
XceI RCATGY 4 cut(s) 282, 425, 1108, 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XmiI GTMKAC 2 cut(s) 741, 1039
XspI CTAG 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.