Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009725.1

Orthogroup ID

OG0006134

Physical Location & Seq

Genomic Coordinates Reverse (-)

35199 .. 40097

Gene Structure 4899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009725.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

atgaagaagagggggactctggggttcgaagattccaaggccgtgtttggactgctcagagcagagcaacgaccactcgaagagatcgtctccgacttcacctctattttctctcacgccttccatttcattccttgcttctccctctccctcctcttacaggataagaagatgctgagttccacccaacgcttgattgcatttgctttacttcaccaggcttatgcttcccagaaaccttccgcgaatccgttcataaatttgattataagtgctgcatgcgatgttgaagctgaaaaatgtgagagggcatttgttctgcagctattacagttatccgggtctgatggctctaatagtggcaaagagcttcttaaacagtccgcgacagattacattaaaaattttgattcttcggtgcatgtcttcccgcaacaggaacatctgcagcagcagtatgcagataaagtccatccagaaccatttagttctccattcaaggatggttctatcaaaaatgtggtagcggaccctgatgttccttctggttgtgatagcaactcatcagagtttgatatacaacccggagcaaaacctaaagtcggttctggagataaagatgagacagtgcttggcttgctgtccaatctagcgctggaaggattaggtcctcactggagtaggcctattcctccgaggcttccagttcaggacgatgaattagtgtggctcaacccagttgacaatcatgaacttttatgggatgatggtatgtgtgttgataccagcagaggtgcagctgtaagggacttgattgctaaagctttgaagggaccacttgtgcctgcacaacaagagcaagtcgtgatggagttgacaaaggacccgaagcttgtatatcactgtgggctgacaccaagaaagctaccggaactggtggaaaataatcccctaattgcagttgaagttctcaccaagttgataaactcccctgaaattgcagaatattttacagtgctcgtcaatatggacatgagtctacactccatggaagttgtgaaccggcttacgacagccgttgaacttccttctgagttcatacacatgtacataaccaattgtatatcctcatgtgagaacattaaggacaagtacatgcagaacagacttgtgaggcttgtctgtgtatttctgcagagccttatccgaaacaacattataaatgttaaggatcttttcattgaagttcaagctttttgcattgagttctcccggattagagaagcagccgcactctttaggctcctaaaatccttggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2363

Protein Analysis

440

Amino Acids

49.16

Weight (kDa)

5.4

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18420 AT5G18420 AT5G18420 AT5G18420
fragaria_vesca	FvH4_5g20280 FvH4_5g20280
malus_domestica	MD04G1052500.v1.1 MD06G1047700.v1.1
prunus_persica	Prupe.5G058000_v2.0.a1
pyrus_communis	pycom04g04630 pycom06g04070
rosa_chinensis	RchiOBHm_Chr7g0205341
rosa_laevigata	RLG00000003386
rosa_multiflora	Rmu_sc0009725.1_g000008 Rmu_ssc0000004.1_g000021
rosa_roxburghii	Rroxscaffold_3G00252440
rosa_rugosa	Rorug07G0089900 Rorug07G0090000 Rorug07G0090000 Rorug07G0090000 Rorug07G0090100 Rorug07G0090200
rosa_samantha	Rh7AG220600 Rh7BG216800 Rh7CG233600 Rh7DG227500
rosa_wichuraiana	Rw7G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	269, 1220
AccI	GTMKAC	1 cut(s)	1039
AccII	CGCG	2 cut(s)	245, 386
AciI	CCGC	5 cut(s)	243, 384, 431, 527, 1290
AclWI	GGATC	1 cut(s)	1239
AcsI	RAATTY	2 cut(s)	259, 403
AfaI	GTAC	2 cut(s)	1109, 1154
AfeI	AGCGCT	1 cut(s)	654
AfiI	CCNNNNNNNGG	3 cut(s)	160, 436, 602
AflIII	ACRYGT	1 cut(s)	1104
AgsI	TTSAA	7 cut(s)	290, 499, 829, 965, 1082, 1244, 1250
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	8 cut(s)	293, 325, 370, 800, 824, 892, 925, 1253
AluI	AGCT	8 cut(s)	293, 325, 370, 800, 824, 892, 925, 1253
Alw21I	GWGCWC	1 cut(s)	1020
Alw26I	GTCTC	2 cut(s)	94, 617
AlwI	GGATC	1 cut(s)	1239
Aor51HI	AGCGCT	1 cut(s)	654
AoxI	GGCC	2 cut(s)	39, 683
ApeKI	GCWGC	6 cut(s)	275, 322, 448, 451, 797, 1286
ApoI	RAATTY	2 cut(s)	259, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	4 cut(s)	529, 668, 833, 883
AsuC2I	CCSGG	3 cut(s)	340, 585, 1273
AsuHPI	GGTGA	3 cut(s)	91, 206, 964
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	4 cut(s)	529, 668, 833, 883
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	1020
BbvI	GCAGC	6 cut(s)	262, 334, 460, 463, 809, 1298
BccI	CCATC	5 cut(s)	341, 480, 497, 761, 862
BceAI	ACGGC	2 cut(s)	26, 1061
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	3 cut(s)	340, 585, 1273
BcoDI	GTCTC	2 cut(s)	94, 617
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	3 cut(s)	320, 446, 1193
BfoI	RGCGCY	1 cut(s)	656
BisI	GCNGC	7 cut(s)	276, 323, 449, 452, 798, 1287, 1290
BlsI	GCNGC	7 cut(s)	277, 324, 450, 453, 799, 1288, 1291
Bme1390I	CCNGG	4 cut(s)	218, 340, 585, 1273
Bme18I	GGWCC	4 cut(s)	529, 668, 833, 883
BmgT120I	GGNCC	4 cut(s)	529, 668, 833, 883
BmiI	GGNNCC	4 cut(s)	531, 834, 885, 1304
BmrFI	CCNGG	4 cut(s)	218, 340, 585, 1273
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	731
BoxI	GACNNNNGTC	1 cut(s)	1035
BpiI	GAAGAC	1 cut(s)	418
BplI	GAGNNNNNCTC	3 cut(s)	33, 74, 106
BpmI	CTGGAG	2 cut(s)	630, 697
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	3 cut(s)	340, 585, 1273
BsaJI	CCNNGG	4 cut(s)	36, 695, 1047, 1314
BsaWI	WCCGGW	1 cut(s)	928
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 436, 602
Bse118I	RCCGGY	1 cut(s)	1062
Bse1I	ACTGG	4 cut(s)	680, 704, 737, 939
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	4 cut(s)	36, 695, 1047, 1314
BseGI	GGATG	3 cut(s)	472, 508, 769
BseLI	CCNNNNNNNGG	3 cut(s)	160, 436, 602
BseMII	CTCAG	3 cut(s)	70, 167, 1083
BseNI	ACTGG	4 cut(s)	680, 704, 737, 939
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	6 cut(s)	262, 334, 460, 463, 809, 1298
BsgI	GTGCAG	2 cut(s)	816, 831
Bsh1236I	CGCG	2 cut(s)	245, 386
BshFI	GGCC	2 cut(s)	41, 685
BsiHKAI	GWGCWC	1 cut(s)	1020
BsiSI	CCGG	5 cut(s)	339, 585, 929, 1063, 1273
BslFI	GGGAC	3 cut(s)	28, 821, 846
BslI	CCNNNNNNNGG	3 cut(s)	160, 436, 602
BsmAI	GTCTC	2 cut(s)	94, 617
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	3 cut(s)	28, 821, 846
BsnI	GGCC	2 cut(s)	41, 685
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	1020
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	2 cut(s)	84, 1231
Bsp19I	CCATGG	1 cut(s)	1047
BspACI	CCGC	5 cut(s)	243, 384, 431, 527, 1290
BspANI	GGCC	2 cut(s)	41, 685
BspCNI	CTCAG	3 cut(s)	69, 168, 1084
BspFNI	CGCG	2 cut(s)	245, 386
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	4 cut(s)	531, 834, 885, 1304
BspMAI	CTGCAG	3 cut(s)	324, 450, 1197
BspPI	GGATC	1 cut(s)	1239
BspT104I	TTCGAA	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	1062
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	4 cut(s)	680, 704, 737, 939
BssAI	RCCGGY	1 cut(s)	1062
BssECI	CCNNGG	4 cut(s)	36, 695, 1047, 1314
BssMI	GATC	2 cut(s)	84, 1231
BssT1I	CCWWGG	3 cut(s)	36, 1047, 1314
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	5 cut(s)	333, 381, 628, 905, 1015
Bst6I	CTCTTC	2 cut(s)	2, 75
BstAUI	TGTACA	1 cut(s)	1107
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	280, 638, 846
BstDEI	CTNAG	3 cut(s)	56, 176, 1092
BstDSI	CCRYGG	1 cut(s)	1047
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	472, 508, 769
BstFNI	CGCG	2 cut(s)	245, 386
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	2 cut(s)	87, 1234
BstMAI	GTCTC	2 cut(s)	94, 617
BstMBI	GATC	2 cut(s)	84, 1231
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	4 cut(s)	282, 425, 1108, 1159
BstPAI	GACNNNNGTC	1 cut(s)	1035
BstSCI	CCNGG	4 cut(s)	216, 338, 583, 1271
BstSFI	CTRYAG	3 cut(s)	320, 446, 1193
BstUI	CGCG	2 cut(s)	245, 386
BstV1I	GCAGC	6 cut(s)	262, 334, 460, 463, 809, 1298
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	1231
BstYI	RGATCY	1 cut(s)	1231
BsuRI	GGCC	2 cut(s)	41, 685
BtgI	CCRYGG	1 cut(s)	1047
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	472, 508, 769
BtsIMutI	CAGTG	4 cut(s)	633, 673, 901, 1020
Cac8I	GCNNGC	3 cut(s)	280, 638, 846
CciI	TCATGA	1 cut(s)	748
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	1062
Cfr13I	GGNCC	4 cut(s)	529, 668, 833, 883
Csp6I	GTAC	2 cut(s)	1108, 1153
CviAII	CATG	8 cut(s)	279, 422, 749, 1033, 1048, 1105, 1131, 1156
CviQI	GTAC	2 cut(s)	1108, 1153
DdeI	CTNAG	3 cut(s)	56, 176, 1092
DpnI	GATC	2 cut(s)	86, 1233
DpnII	GATC	2 cut(s)	84, 1231
Eam1104I	CTCTTC	2 cut(s)	2, 75
EarI	CTCTTC	2 cut(s)	2, 75
Eco130I	CCWWGG	3 cut(s)	36, 1047, 1314
Eco147I	AGGCCT	1 cut(s)	685
Eco47I	GGWCC	4 cut(s)	529, 668, 833, 883
Eco47III	AGCGCT	1 cut(s)	654
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	668, 883
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	3 cut(s)	36, 1047, 1314
ErhI	CCWWGG	3 cut(s)	36, 1047, 1314
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	8 cut(s)	282, 425, 752, 1036, 1051, 1108, 1134, 1159
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	3 cut(s)	28, 821, 846
FatI	CATG	8 cut(s)	278, 421, 748, 1032, 1047, 1104, 1130, 1155
FauI	CCCGC	1 cut(s)	438
FblI	GTMKAC	1 cut(s)	1039
Fnu4HI	GCNGC	7 cut(s)	276, 323, 449, 452, 798, 1287, 1290
FokI	GGATG	3 cut(s)	459, 515, 776
Fsp4HI	GCNGC	7 cut(s)	276, 323, 449, 452, 798, 1287, 1290
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	7 cut(s)	276, 323, 449, 452, 798, 1287, 1290
GsuI	CTGGAG	2 cut(s)	630, 697
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	41, 685
HapII	CCGG	5 cut(s)	339, 585, 929, 1063, 1273
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	8 cut(s)	282, 425, 752, 1036, 1051, 1108, 1134, 1159
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	2 cut(s)	742, 876
HindII	GTYRAC	2 cut(s)	742, 876
HindIII	AAGCTT	3 cut(s)	822, 890, 1251
HinfI	GANTC	5 cut(s)	16, 32, 247, 410, 1036
HpaII	CCGG	5 cut(s)	339, 585, 929, 1063, 1273
HphI	GGTGA	3 cut(s)	91, 206, 964
Hpy166II	GTNNAC	4 cut(s)	742, 876, 1040, 1060
Hpy188I	TCNGA	7 cut(s)	59, 94, 346, 568, 696, 1093, 1208
Hpy188III	TCNNGA	5 cut(s)	476, 609, 710, 749, 865
Hpy8I	GTNNAC	4 cut(s)	742, 876, 1040, 1060
HpyAV	CCTTC	6 cut(s)	130, 249, 552, 653, 823, 1098
HpyCH4III	ACNGT	5 cut(s)	333, 381, 628, 905, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	3 cut(s)	56, 176, 1092
Hsp92II	CATG	8 cut(s)	282, 425, 752, 1036, 1051, 1108, 1134, 1159
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	2 cut(s)	84, 1231
LmnI	GCTCC	2 cut(s)	587, 1308
Lsp1109I	GCAGC	6 cut(s)	262, 334, 460, 463, 809, 1298
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	650
MalI	GATC	2 cut(s)	86, 1233
MboI	GATC	2 cut(s)	84, 1231
MboII	GAAGA	7 cut(s)	16, 19, 41, 92, 181, 405, 418
MfeI	CAATTG	1 cut(s)	1117
MflI	RGATCY	1 cut(s)	1231
MhlI	GDGCHC	1 cut(s)	1020
MluCI	AATT	6 cut(s)	259, 403, 719, 954, 996, 1117
MlyI	GAGTC	2 cut(s)	10, 1045
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	4 cut(s)	375, 399, 1143, 1227
MslI	CAYNNNNRTG	1 cut(s)	1103
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	5 cut(s)	339, 585, 929, 1063, 1273
MspR9I	CCNGG	4 cut(s)	218, 340, 585, 1273
MunI	CAATTG	1 cut(s)	1117
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	2 cut(s)	245, 386
MwoI	GCNNNNNNNGC	1 cut(s)	637
NciI	CCSGG	3 cut(s)	340, 585, 1273
NcoI	CCATGG	1 cut(s)	1047
NdeII	GATC	2 cut(s)	84, 1231
NlaIII	CATG	8 cut(s)	282, 425, 752, 1036, 1051, 1108, 1134, 1159
NlaIV	GGNNCC	4 cut(s)	531, 834, 885, 1304
NspI	RCATGY	4 cut(s)	282, 425, 1108, 1159
NspV	TTCGAA	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	282
PagI	TCATGA	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	685
PciI	ACATGT	1 cut(s)	1104
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	32, 247, 410
PfoI	TCCNGGA	1 cut(s)	1271
PkrI	GCNGC	7 cut(s)	277, 324, 450, 453, 799, 1288, 1291
PleI	GAGTC	2 cut(s)	10, 1044
PpsI	GAGTC	2 cut(s)	10, 1044
PpuMI	RGGWCCY	2 cut(s)	668, 883
PscI	ACATGT	1 cut(s)	1104
PshAI	GACNNNNGTC	1 cut(s)	1035
PsiI	TTATAA	2 cut(s)	269, 1220
Psp5II	RGGWCCY	2 cut(s)	668, 883
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	531, 834, 885, 1304
PspPI	GGNCC	4 cut(s)	529, 668, 833, 883
PspPPI	RGGWCCY	2 cut(s)	668, 883
PstI	CTGCAG	3 cut(s)	324, 450, 1197
PsuI	RGATCY	1 cut(s)	1231
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	2 cut(s)	1109, 1154
RsaNI	GTAC	2 cut(s)	1108, 1153
RseI	CAYNNNNRTG	1 cut(s)	1103
SaqAI	TTAA	4 cut(s)	375, 399, 1143, 1227
SatI	GCNGC	7 cut(s)	276, 323, 449, 452, 798, 1287, 1290
Sau3AI	GATC	2 cut(s)	84, 1231
Sau96I	GGNCC	4 cut(s)	529, 668, 833, 883
SchI	GAGTC	2 cut(s)	10, 1045
ScrFI	CCNGG	4 cut(s)	218, 340, 585, 1273
SduI	GDGCHC	1 cut(s)	1020
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	3 cut(s)	320, 446, 1193
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	4 cut(s)	529, 668, 833, 883
SmiMI	CAYNNNNRTG	1 cut(s)	1103
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	6 cut(s)	259, 403, 719, 954, 996, 1117
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	5 cut(s)	243, 384, 431, 527, 1290
SspI	AATATT	1 cut(s)	1007
SspMI	CTAG	1 cut(s)	650
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	4 cut(s)	216, 338, 583, 1271
StyI	CCWWGG	3 cut(s)	36, 1047, 1314
TaaI	ACNGT	5 cut(s)	333, 381, 628, 905, 1015
TaqI	TCGA	2 cut(s)	27, 78
TasI	AATT	6 cut(s)	259, 403, 719, 954, 996, 1117
TatI	WGTACW	2 cut(s)	1107, 1152
TauI	GCSGC	1 cut(s)	1292
TfiI	GAWTC	3 cut(s)	32, 247, 410
Tru1I	TTAA	4 cut(s)	375, 399, 1143, 1227
Tru9I	TTAA	4 cut(s)	375, 399, 1143, 1227
TscAI	CASTG	4 cut(s)	633, 680, 908, 1020
TseI	GCWGC	6 cut(s)	275, 322, 448, 451, 797, 1286
TspDTI	ATGAA	7 cut(s)	17, 118, 244, 732, 765, 1087, 1228
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	4 cut(s)	633, 680, 908, 1020
VpaK11BI	GGWCC	4 cut(s)	529, 668, 833, 883
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	259, 403
XceI	RCATGY	4 cut(s)	282, 425, 1108, 1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XmiI	GTMKAC	1 cut(s)	1039
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.