Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006134

Physical Location & Seq

Genomic Coordinates Reverse (-)

5105967 .. 5113322

Gene Structure 7356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04070.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGAAGCTCGGCTTTGAAGAATCGAAAGCTGTGTTTGGACTGCTCAGAGCAGAGCAGCGCCCGATCGAAGAGATCGTCTCTGAGTTCAACTCCCTTTTCTCCCATGGCCGCCAATTCATTCCCTGCTTCTCTCTCTCCCTTCTTTTACAGGACAAGAAGATGCTGAACTCCACTCAACGTTTGATTGCGTTCACTATTCTTCAGCAGGCATATTCGTCCCAGAAACCTTCTGCAAATCCGTTCTTTAGTTTACTTATAAACGCTGCATGTGATGTTGAAGCCGAAAAGTATGAGAGGGCACTTGTTCTGCAGCTATTACAACTATTTGGATCTGATGGCTCTAGTGGTGGCAAAGAGATACTTAAACAAACTGCTACAGAGTACATCAAAAGTTTTGATCCTTCAGTACATGCATTCCCGCAACAAGAACAGTTGCAGCAGCAGTATGCTGATAAAGTCCATCCAGACCGATTTATTTCTCCATTCAAGGATGGTTCTGTCAGAAATGTGGTCGCAGACCCTGATGTTCCTCGTGGTTGTGATGTTAACTCATTAGAGTTTGATCTACAAACTGGAACAAAACCTAAAATTGGATCTGGAGATAGAGACGAGACAGTGCTTGGCTTGCTATCCAATTTAGCGCTGGAAGGGTTAGGTCCACACTGGAAAAGGCCTATTCCACCAAGGCTCCCAGTTCAGGATGATGAACTAGTGTGGCTCAACCCTGTTGACAATCATGAACTTTTATGGGATGATGGCATGTGTATTGACACTAGCAGAGGGGAAGCTGTCAGGGACTTGATTGCAAAAGCATTAAAAGGACCACTTGCGCCTGCACAACAAGAGCTAGTCTTTTCGGAGTTGGCAAATGACCTGAAACTTGTATATCACTGTGGGCTGACACCAAGAAAGCTACCGGAATTGGTGGAAAATAATCCCCTAATTGCAGTTGAAGTCCTCACCAAGCTGATAAATTCCCCTGAAATAGCGGAATACTTTACAGTGCTTGTCAATATGGACATGAGTCTGCACTCTATGGAAGTGGTGAACAGGCTTACTACAGCAGTCGATCTTCCTTCCGAGTTCATACACCTGTACATAACAAATTGTATATCATCCTGTGAGAACATCAAGGATAAATACATGCAGAACAGGCTTGTGAGACTAGTTTGCGTGTTTCTTCAGAGCCTTATCCGAAACAACATTATCAATGTTAAGGATCTTTTCATCGAAGTCCAAGCTTTTTGCATAGAGTTCTCGCGGATTAGGGAAGCAGCGGCGCTCTTCAGGCTCCTAAAGTCCTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2363

Protein Analysis

437

Amino Acids

49.13

Weight (kDa)

5.24

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18420 AT5G18420 AT5G18420 AT5G18420
fragaria_vesca	FvH4_5g20280 FvH4_5g20280
malus_domestica	MD04G1052500.v1.1 MD06G1047700.v1.1
prunus_persica	Prupe.5G058000_v2.0.a1
pyrus_communis	pycom04g04630 pycom06g04070
rosa_chinensis	RchiOBHm_Chr7g0205341
rosa_laevigata	RLG00000003386
rosa_multiflora	Rmu_sc0009725.1_g000008 Rmu_ssc0000004.1_g000021
rosa_roxburghii	Rroxscaffold_3G00252440
rosa_rugosa	Rorug07G0089900 Rorug07G0090000 Rorug07G0090000 Rorug07G0090000 Rorug07G0090100 Rorug07G0090200
rosa_samantha	Rh7AG220600 Rh7BG216800 Rh7CG233600 Rh7DG227500
rosa_wichuraiana	Rw7G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccII	CGCG	1 cut(s)	1261
AciI	CCGC	5 cut(s)	109, 419, 989, 1261, 1277
AclI	AACGTT	1 cut(s)	178
AclWI	GGATC	4 cut(s)	337, 392, 601, 1227
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	973
AcuI	CTGAAG	4 cut(s)	185, 387, 1166, 1270
AfaI	GTAC	3 cut(s)	383, 408, 1097
AfeI	AGCGCT	1 cut(s)	642
AfiI	CCNNNNNNNGG	2 cut(s)	590, 697
AgsI	TTSAA	5 cut(s)	17, 88, 278, 487, 953
AhlI	ACTAGT	2 cut(s)	709, 1165
AluBI	AGCT	8 cut(s)	7, 29, 313, 788, 847, 913, 967, 1241
AluI	AGCT	8 cut(s)	7, 29, 313, 788, 847, 913, 967, 1241
Alw26I	GTCTC	4 cut(s)	82, 600, 605, 1156
AlwI	GGATC	4 cut(s)	337, 392, 601, 1227
AlwNI	CAGNNNCTG	1 cut(s)	521
Aor51HI	AGCGCT	1 cut(s)	642
AoxI	GGCC	2 cut(s)	106, 671
ApeKI	GCWGC	6 cut(s)	55, 263, 310, 436, 439, 1274
ApoI	RAATTY	1 cut(s)	973
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspLEI	GCGC	4 cut(s)	60, 643, 832, 1282
AspS9I	GGNCC	2 cut(s)	656, 821
AsuHPI	GGTGA	2 cut(s)	952, 1057
AvaII	GGWCC	2 cut(s)	656, 821
BaeGI	GKGCMC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	531
BbvI	GCAGC	6 cut(s)	67, 250, 322, 448, 451, 1286
BccI	CCATC	4 cut(s)	329, 468, 485, 749
BcoDI	GTCTC	4 cut(s)	82, 600, 605, 1156
BcuI	ACTAGT	2 cut(s)	709, 1165
BfaI	CTAG	5 cut(s)	342, 710, 774, 848, 1166
BfmI	CTRYAG	3 cut(s)	308, 375, 1059
BfoI	RGCGCY	3 cut(s)	61, 644, 1283
BisI	GCNGC	8 cut(s)	56, 109, 264, 311, 437, 440, 1275, 1278
BlsI	GCNGC	8 cut(s)	57, 110, 265, 312, 438, 441, 1276, 1279
Bme18I	GGWCC	2 cut(s)	656, 821
BmgT120I	GGNCC	2 cut(s)	656, 821
BmiI	GGNNCC	2 cut(s)	689, 1292
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	686
BoxI	GACNNNNGTC	1 cut(s)	1023
BplI	GAGNNNNNCTC	4 cut(s)	62, 94, 74, 106
BpmI	CTGGAG	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	103, 683, 1302
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 697
Bse1I	ACTGG	3 cut(s)	577, 668, 692
BseDI	CCNNGG	3 cut(s)	103, 683, 1302
BseGI	GGATG	5 cut(s)	460, 496, 706, 757, 1115
BseLI	CCNNNNNNNGG	2 cut(s)	590, 697
BseMII	CTCAG	2 cut(s)	58, 72
BseNI	ACTGG	3 cut(s)	577, 668, 692
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	6 cut(s)	67, 250, 322, 448, 451, 1286
BsgI	GTGCAG	2 cut(s)	819, 1013
Bsh1236I	CGCG	1 cut(s)	1261
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	108, 673
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	2 cut(s)	202, 809
BslI	CCNNNNNNNGG	2 cut(s)	590, 697
BsmAI	GTCTC	4 cut(s)	82, 600, 605, 1156
BsmBI	CGTCTC	2 cut(s)	82, 600
BsmFI	GGGAC	2 cut(s)	202, 809
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	2 cut(s)	108, 673
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp1407I	TGTACA	1 cut(s)	1095
Bsp143I	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	5 cut(s)	109, 419, 989, 1261, 1277
BspANI	GGCC	2 cut(s)	108, 673
BspCNI	CTCAG	2 cut(s)	57, 73
BspFNI	CGCG	1 cut(s)	1261
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	689, 1292
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	4 cut(s)	337, 392, 601, 1227
BspQI	GCTCTTC	1 cut(s)	1289
BsrGI	TGTACA	1 cut(s)	1095
BsrI	ACTGG	3 cut(s)	577, 668, 692
BssECI	CCNNGG	3 cut(s)	103, 683, 1302
BssMI	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	3 cut(s)	103, 683, 1302
Bst2BI	CACGAG	1 cut(s)	531
Bst4CI	ACNGT	4 cut(s)	432, 616, 893, 1003
Bst6I	CTCTTC	2 cut(s)	63, 1289
BstAUI	TGTACA	1 cut(s)	1095
BstC8I	GCNNGC	3 cut(s)	207, 626, 834
BstDEI	CTNAG	2 cut(s)	44, 81
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	5 cut(s)	460, 496, 706, 757, 1115
BstFNI	CGCG	1 cut(s)	1261
BstH2I	RGCGCY	3 cut(s)	61, 644, 1283
BstHHI	GCGC	4 cut(s)	60, 643, 832, 1282
BstKTI	GATC	8 cut(s)	66, 75, 332, 400, 565, 596, 1072, 1222
BstMAI	GTCTC	4 cut(s)	82, 600, 605, 1156
BstMBI	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	625, 1153, 1288
BstNSI	RCATGY	4 cut(s)	270, 413, 763, 1147
BstPAI	GACNNNNGTC	1 cut(s)	1023
BstSFI	CTRYAG	3 cut(s)	308, 375, 1059
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	1261
BstV1I	GCAGC	6 cut(s)	67, 250, 322, 448, 451, 1286
BstX2I	RGATCY	3 cut(s)	329, 593, 1219
BstYI	RGATCY	3 cut(s)	329, 593, 1219
BsuRI	GGCC	2 cut(s)	108, 673
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	5 cut(s)	460, 496, 706, 757, 1115
BtsIMutI	CAGTG	4 cut(s)	621, 661, 889, 1008
Cac8I	GCNNGC	3 cut(s)	207, 626, 834
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	4 cut(s)	60, 643, 832, 1282
Cfr13I	GGNCC	2 cut(s)	656, 821
Csp6I	GTAC	3 cut(s)	382, 407, 1096
CviAII	CATG	7 cut(s)	104, 267, 410, 737, 760, 1021, 1144
CviQI	GTAC	3 cut(s)	382, 407, 1096
DdeI	CTNAG	2 cut(s)	44, 81
DpnI	GATC	8 cut(s)	65, 74, 331, 399, 564, 595, 1071, 1221
DpnII	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	63, 1289
EarI	CTCTTC	2 cut(s)	63, 1289
Eco130I	CCWWGG	3 cut(s)	103, 683, 1302
Eco147I	AGGCCT	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	656, 821
Eco47III	AGCGCT	1 cut(s)	642
Eco57I	CTGAAG	4 cut(s)	185, 387, 1166, 1270
EcoT14I	CCWWGG	3 cut(s)	103, 683, 1302
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	3 cut(s)	103, 683, 1302
Esp3I	CGTCTC	2 cut(s)	82, 600
FaeI	CATG	7 cut(s)	107, 270, 413, 740, 763, 1024, 1147
FalI	AAGNNNNNCTT	5 cut(s)	28, 345, 377, 810, 842
FaqI	GGGAC	2 cut(s)	202, 809
FatI	CATG	7 cut(s)	103, 266, 409, 736, 759, 1020, 1143
FauI	CCCGC	1 cut(s)	426
Fnu4HI	GCNGC	8 cut(s)	56, 109, 264, 311, 437, 440, 1275, 1278
FokI	GGATG	5 cut(s)	447, 503, 713, 764, 1102
Fsp4HI	GCNGC	8 cut(s)	56, 109, 264, 311, 437, 440, 1275, 1278
FspBI	CTAG	5 cut(s)	342, 710, 774, 848, 1166
GlaI	GCGC	4 cut(s)	59, 642, 831, 1281
GluI	GCNGC	8 cut(s)	56, 109, 264, 311, 437, 440, 1275, 1278
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	3 cut(s)	61, 644, 1283
HaeIII	GGCC	2 cut(s)	108, 673
HapII	CCGG	1 cut(s)	917
HhaI	GCGC	4 cut(s)	60, 643, 832, 1282
Hin1II	CATG	7 cut(s)	107, 270, 413, 740, 763, 1024, 1147
Hin6I	GCGC	4 cut(s)	58, 641, 830, 1280
HinP1I	GCGC	4 cut(s)	58, 641, 830, 1280
HincII	GTYRAC	2 cut(s)	547, 730
HindII	GTYRAC	2 cut(s)	547, 730
HindIII	AAGCTT	1 cut(s)	1239
HinfI	GANTC	2 cut(s)	20, 1024
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	2 cut(s)	952, 1057
Hpy166II	GTNNAC	6 cut(s)	192, 251, 547, 659, 730, 1048
Hpy188I	TCNGA	8 cut(s)	47, 82, 334, 503, 859, 1081, 1185, 1196
Hpy188III	TCNNGA	4 cut(s)	464, 597, 698, 737
Hpy8I	GTNNAC	6 cut(s)	192, 251, 547, 659, 730, 1048
HpyAV	CCTTC	5 cut(s)	149, 237, 411, 641, 1086
HpyCH4III	ACNGT	4 cut(s)	432, 616, 893, 1003
HpyCH4IV	ACGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	625, 1153, 1288
HpyF3I	CTNAG	2 cut(s)	44, 81
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	7 cut(s)	107, 270, 413, 740, 763, 1024, 1147
HspAI	GCGC	4 cut(s)	58, 641, 830, 1280
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
LguI	GCTCTTC	1 cut(s)	1289
LmnI	GCTCC	2 cut(s)	693, 1296
Lsp1109I	GCAGC	6 cut(s)	67, 250, 322, 448, 451, 1286
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	5 cut(s)	342, 710, 774, 848, 1166
MaeII	ACGT	1 cut(s)	178
MalI	GATC	8 cut(s)	65, 74, 331, 399, 564, 595, 1071, 1221
MboI	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
MboII	GAAGA	7 cut(s)	29, 80, 169, 191, 1064, 1172, 1276
MflI	RGATCY	3 cut(s)	329, 593, 1219
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	7 cut(s)	113, 588, 634, 920, 942, 973, 1105
MlyI	GAGTC	1 cut(s)	1033
MnlI	CCTC	4 cut(s)	288, 540, 773, 968
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	4 cut(s)	363, 546, 815, 1215
MspA1I	CMGCKG	1 cut(s)	1277
MspI	CCGG	1 cut(s)	917
Mva1269I	GAATGC	1 cut(s)	413
MvnI	CGCG	1 cut(s)	1261
MwoI	GCNNNNNNNGC	3 cut(s)	625, 1153, 1288
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
NlaIII	CATG	7 cut(s)	107, 270, 413, 740, 763, 1024, 1147
NlaIV	GGNNCC	2 cut(s)	689, 1292
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	4 cut(s)	270, 413, 763, 1147
PagI	TCATGA	1 cut(s)	736
PceI	AGGCCT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	1289
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	57, 110, 265, 312, 438, 441, 1276, 1279
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	1032
PpsI	GAGTC	1 cut(s)	1032
PshAI	GACNNNNGTC	1 cut(s)	1023
PsiI	TTATAA	1 cut(s)	257
Psp1406I	AACGTT	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	689, 1292
PspPI	GGNCC	2 cut(s)	656, 821
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	3 cut(s)	329, 593, 1219
PvuI	CGATCG	1 cut(s)	66
RsaI	GTAC	3 cut(s)	383, 408, 1097
RsaNI	GTAC	3 cut(s)	382, 407, 1096
SapI	GCTCTTC	1 cut(s)	1289
SaqAI	TTAA	4 cut(s)	363, 546, 815, 1215
SatI	GCNGC	8 cut(s)	56, 109, 264, 311, 437, 440, 1275, 1278
Sau3AI	GATC	8 cut(s)	63, 72, 329, 397, 562, 593, 1069, 1219
Sau96I	GGNCC	2 cut(s)	656, 821
SchI	GAGTC	1 cut(s)	1033
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	3 cut(s)	308, 375, 1059
SinI	GGWCC	2 cut(s)	656, 821
SpeI	ACTAGT	2 cut(s)	709, 1165
Sse9I	AATT	7 cut(s)	113, 588, 634, 920, 942, 973, 1105
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	5 cut(s)	109, 419, 989, 1261, 1277
SspMI	CTAG	5 cut(s)	342, 710, 774, 848, 1166
StuI	AGGCCT	1 cut(s)	673
StyI	CCWWGG	3 cut(s)	103, 683, 1302
TaaI	ACNGT	4 cut(s)	432, 616, 893, 1003
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	4 cut(s)	23, 66, 1068, 1230
TaqII	GACCGA	1 cut(s)	483
TasI	AATT	7 cut(s)	113, 588, 634, 920, 942, 973, 1105
TatI	WGTACW	3 cut(s)	381, 406, 1095
TauI	GCSGC	2 cut(s)	111, 1280
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	363, 546, 815, 1215
Tru9I	TTAA	4 cut(s)	363, 546, 815, 1215
TscAI	CASTG	4 cut(s)	621, 668, 896, 1008
TseI	GCWGC	6 cut(s)	55, 263, 310, 436, 439, 1274
TspDTI	ATGAA	6 cut(s)	17, 106, 720, 753, 1075, 1216
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	4 cut(s)	621, 668, 896, 1008
VpaK11BI	GGWCC	2 cut(s)	656, 821
XapI	RAATTY	1 cut(s)	973
XceI	RCATGY	4 cut(s)	270, 413, 763, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XspI	CTAG	5 cut(s)	342, 710, 774, 848, 1166
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.