Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006134

Physical Location & Seq

Genomic Coordinates Forward (+)

22376656 .. 22382397

Gene Structure 5742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAGAAGAGGGGGACTCTGGGGTTCGAAGATTCCAAGGCCGTGTTTGGATTGCTCAGAGCAGAGCAACGACCACTCGAAGAGATCGTCTCCGACTTCACCTCTATTTTCTCTCACGCCTTCCATTTCATTCCTTGCTTCTCCCTCTCCCTCCTCTTACAGGATAAGAAGATGCTGAGTTCCACCCAACGCTTGATTGCATTTGCTTTACTTCACCAGGCTTATGCTTCCCAGAAACCTTCCGCGAATCCGTTCATAAATTTGATTATAAGTGCTGCATGCGATGTTGAAGCTGAAAAATGTGAGAGGGCATTTGTTCTGCAGCTATTACAGTTATCCGGGTCTGATGGCTCTAATAGTGGCAAAGAGCTTCTTAAACAGTCCGCGGCAGATTACATTAAAAATTTTGATTCTTCGGTGCATGTCTTCCCGCAACAGGAACATCTGCAGCAGCAGTATGCAGATAAAGTCCATCCAGAACCATATAGTTCTCCATTCAAGGATGGTTCTATCAAAAATGTGGTAGCGGACCCTGATGTTCCTTCTGGTTGTGATACCAACTCATCAGAGTTTGATCTACAACCCGGAGCAAAACCTAAAGTCGGTTCTGGAGATAAAGACGAGACAGTGCTTGGCTTGCTGTCCAATCTAGCGCTGGAAGGATTAGGTCCTCACTGGAGTAGGCCTTTTCCTCCGAGGCTTCCAGTTCAGGACGATGAACTAGTGTGGCTCAACCCAGTTGACAATCATGAACTTTTATGGGATGATGGTATGTGTGTTGATACCAGCAGAGGTGCAGCTGTAAGGGACTTGATTGCTAAAGCTTTGAAGGGACCACTTGTGCCTGCACAACAAGAGCAAGTCGTGATGGAGTTGACAAATGACCCGAAGCTTGTATATCACTGTGGGCTGACACCAAGAAAGCTACCGGAACTGGTGGAAAATAATCCCCTAATTGCAGTTGAAGTTCTCACCAAGTTGATAAACTCCCCTGAAATTGCAGAGTATGTCTTCAGTTCTGTGATTTATTTCCATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2363

Protein Analysis

346

Amino Acids

38.25

Weight (kDa)

5.16

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18420 AT5G18420 AT5G18420 AT5G18420
fragaria_vesca	FvH4_5g20280 FvH4_5g20280
malus_domestica	MD04G1052500.v1.1 MD06G1047700.v1.1
prunus_persica	Prupe.5G058000_v2.0.a1
pyrus_communis	pycom04g04630 pycom06g04070
rosa_chinensis	RchiOBHm_Chr7g0205341
rosa_laevigata	RLG00000003386
rosa_multiflora	Rmu_sc0009725.1_g000008 Rmu_ssc0000004.1_g000021
rosa_roxburghii	Rroxscaffold_3G00252440
rosa_rugosa	Rorug07G0089900 Rorug07G0090000 Rorug07G0090000 Rorug07G0090000 Rorug07G0090100 Rorug07G0090200
rosa_samantha	Rh7AG220600 Rh7BG216800 Rh7CG233600 Rh7DG227500
rosa_wichuraiana	Rw7G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AccII	CGCG	2 cut(s)	245, 386
AciI	CCGC	5 cut(s)	243, 384, 386, 431, 527
AcsI	RAATTY	2 cut(s)	259, 403
AcuI	CTGAAG	1 cut(s)	997
AfeI	AGCGCT	1 cut(s)	654
AfiI	CCNNNNNNNGG	3 cut(s)	160, 436, 602
AgsI	TTSAA	4 cut(s)	290, 499, 829, 965
AhlI	ACTAGT	1 cut(s)	721
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	7 cut(s)	293, 325, 370, 800, 824, 892, 925
AluI	AGCT	7 cut(s)	293, 325, 370, 800, 824, 892, 925
Alw26I	GTCTC	2 cut(s)	94, 617
Aor51HI	AGCGCT	1 cut(s)	654
AoxI	GGCC	2 cut(s)	39, 683
ApeKI	GCWGC	5 cut(s)	275, 322, 448, 451, 797
ApoI	RAATTY	2 cut(s)	259, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	3 cut(s)	529, 668, 833
AsuC2I	CCSGG	2 cut(s)	340, 585
AsuHPI	GGTGA	3 cut(s)	91, 206, 964
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	3 cut(s)	529, 668, 833
BbsI	GAAGAC	2 cut(s)	418, 1003
BbvI	GCAGC	5 cut(s)	262, 334, 460, 463, 809
BccI	CCATC	5 cut(s)	341, 480, 497, 761, 862
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	2 cut(s)	340, 585
BcoDI	GTCTC	2 cut(s)	94, 617
BcuI	ACTAGT	1 cut(s)	721
BfaI	CTAG	2 cut(s)	650, 722
BfmI	CTRYAG	2 cut(s)	320, 446
BfoI	RGCGCY	1 cut(s)	656
BisI	GCNGC	6 cut(s)	276, 323, 387, 449, 452, 798
BlsI	GCNGC	6 cut(s)	277, 324, 388, 450, 453, 799
Bme1390I	CCNGG	3 cut(s)	218, 340, 585
Bme18I	GGWCC	3 cut(s)	529, 668, 833
BmgT120I	GGNCC	3 cut(s)	529, 668, 833
BmiI	GGNNCC	2 cut(s)	531, 834
BmrFI	CCNGG	3 cut(s)	218, 340, 585
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	731
BpiI	GAAGAC	2 cut(s)	418, 1003
BplI	GAGNNNNNCTC	3 cut(s)	33, 74, 106
BpmI	CTGGAG	2 cut(s)	630, 697
Bpu14I	TTCGAA	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	340, 585
BsaJI	CCNNGG	3 cut(s)	36, 384, 695
BsaWI	WCCGGW	1 cut(s)	928
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 436, 602
Bse1I	ACTGG	4 cut(s)	680, 704, 737, 939
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	36, 384, 695
BseGI	GGATG	3 cut(s)	472, 508, 769
BseLI	CCNNNNNNNGG	3 cut(s)	160, 436, 602
BseMII	CTCAG	2 cut(s)	70, 167
BseNI	ACTGG	4 cut(s)	680, 704, 737, 939
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	5 cut(s)	262, 334, 460, 463, 809
BsgI	GTGCAG	2 cut(s)	816, 831
Bsh1236I	CGCG	2 cut(s)	245, 386
BshFI	GGCC	2 cut(s)	41, 685
BsiSI	CCGG	3 cut(s)	339, 585, 929
BslFI	GGGAC	3 cut(s)	28, 821, 846
BslI	CCNNNNNNNGG	3 cut(s)	160, 436, 602
BsmAI	GTCTC	2 cut(s)	94, 617
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	3 cut(s)	28, 821, 846
BsnI	GGCC	2 cut(s)	41, 685
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	84, 574
BspACI	CCGC	5 cut(s)	243, 384, 386, 431, 527
BspANI	GGCC	2 cut(s)	41, 685
BspCNI	CTCAG	2 cut(s)	69, 168
BspFNI	CGCG	2 cut(s)	245, 386
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	531, 834
BspMAI	CTGCAG	2 cut(s)	324, 450
BspT104I	TTCGAA	1 cut(s)	27
BsrI	ACTGG	4 cut(s)	680, 704, 737, 939
BssECI	CCNNGG	3 cut(s)	36, 384, 695
BssMI	GATC	2 cut(s)	84, 574
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	4 cut(s)	333, 381, 628, 905
Bst6I	CTCTTC	2 cut(s)	2, 75
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	280, 638, 846
BstDEI	CTNAG	2 cut(s)	56, 176
BstDSI	CCRYGG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	472, 508, 769
BstFNI	CGCG	2 cut(s)	245, 386
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	2 cut(s)	87, 577
BstMAI	GTCTC	2 cut(s)	94, 617
BstMBI	GATC	2 cut(s)	84, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	2 cut(s)	282, 425
BstSCI	CCNGG	3 cut(s)	216, 338, 583
BstSFI	CTRYAG	2 cut(s)	320, 446
BstUI	CGCG	2 cut(s)	245, 386
BstV1I	GCAGC	5 cut(s)	262, 334, 460, 463, 809
BstV2I	GAAGAC	2 cut(s)	418, 1003
BsuRI	GGCC	2 cut(s)	41, 685
BtgI	CCRYGG	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	472, 508, 769
BtsIMutI	CAGTG	3 cut(s)	633, 673, 901
Cac8I	GCNNGC	3 cut(s)	280, 638, 846
CciI	TCATGA	1 cut(s)	748
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	3 cut(s)	529, 668, 833
Cfr42I	CCGCGG	1 cut(s)	387
CviAII	CATG	3 cut(s)	279, 422, 749
DdeI	CTNAG	2 cut(s)	56, 176
DpnI	GATC	2 cut(s)	86, 576
DpnII	GATC	2 cut(s)	84, 574
Eam1104I	CTCTTC	2 cut(s)	2, 75
EarI	CTCTTC	2 cut(s)	2, 75
Eco130I	CCWWGG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	685
Eco47I	GGWCC	3 cut(s)	529, 668, 833
Eco47III	AGCGCT	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	997
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	3 cut(s)	282, 425, 752
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	3 cut(s)	28, 821, 846
FatI	CATG	3 cut(s)	278, 421, 748
FauI	CCCGC	1 cut(s)	438
Fnu4HI	GCNGC	6 cut(s)	276, 323, 387, 449, 452, 798
FokI	GGATG	3 cut(s)	459, 515, 776
Fsp4HI	GCNGC	6 cut(s)	276, 323, 387, 449, 452, 798
FspBI	CTAG	2 cut(s)	650, 722
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	6 cut(s)	276, 323, 387, 449, 452, 798
GsuI	CTGGAG	2 cut(s)	630, 697
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	41, 685
HapII	CCGG	3 cut(s)	339, 585, 929
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	282, 425, 752
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	2 cut(s)	742, 876
HindII	GTYRAC	2 cut(s)	742, 876
HindIII	AAGCTT	2 cut(s)	822, 890
HinfI	GANTC	4 cut(s)	16, 32, 247, 410
HpaII	CCGG	3 cut(s)	339, 585, 929
HphI	GGTGA	3 cut(s)	91, 206, 964
Hpy166II	GTNNAC	2 cut(s)	742, 876
Hpy188I	TCNGA	5 cut(s)	59, 94, 346, 568, 696
Hpy188III	TCNNGA	5 cut(s)	476, 609, 710, 749, 865
Hpy8I	GTNNAC	2 cut(s)	742, 876
HpyAV	CCTTC	5 cut(s)	130, 249, 552, 653, 823
HpyCH4III	ACNGT	4 cut(s)	333, 381, 628, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	2 cut(s)	56, 176
Hsp92II	CATG	3 cut(s)	282, 425, 752
HspAI	GCGC	1 cut(s)	653
KspI	CCGCGG	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	84, 574
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	5 cut(s)	262, 334, 460, 463, 809
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	650, 722
MalI	GATC	2 cut(s)	86, 576
MboI	GATC	2 cut(s)	84, 574
MboII	GAAGA	8 cut(s)	16, 19, 41, 92, 181, 405, 418, 1003
MluCI	AATT	4 cut(s)	259, 403, 954, 996
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	2 cut(s)	375, 399
MspA1I	CMGCKG	2 cut(s)	386, 800
MspI	CCGG	3 cut(s)	339, 585, 929
MspR9I	CCNGG	3 cut(s)	218, 340, 585
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	2 cut(s)	245, 386
MwoI	GCNNNNNNNGC	1 cut(s)	637
NciI	CCSGG	2 cut(s)	340, 585
NdeII	GATC	2 cut(s)	84, 574
NlaIII	CATG	3 cut(s)	282, 425, 752
NlaIV	GGNNCC	2 cut(s)	531, 834
NspI	RCATGY	2 cut(s)	282, 425
NspV	TTCGAA	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	282
PagI	TCATGA	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	32, 247, 410
PkrI	GCNGC	6 cut(s)	277, 324, 388, 450, 453, 799
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	668
PsiI	TTATAA	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	531, 834
PspPI	GGNCC	3 cut(s)	529, 668, 833
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	2 cut(s)	324, 450
PvuII	CAGCTG	1 cut(s)	800
SacII	CCGCGG	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	375, 399
SatI	GCNGC	6 cut(s)	276, 323, 387, 449, 452, 798
Sau3AI	GATC	2 cut(s)	84, 574
Sau96I	GGNCC	3 cut(s)	529, 668, 833
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	3 cut(s)	218, 340, 585
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	2 cut(s)	320, 446
Sfr303I	CCGCGG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	387
SinI	GGWCC	3 cut(s)	529, 668, 833
SpeI	ACTAGT	1 cut(s)	721
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	4 cut(s)	259, 403, 954, 996
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	5 cut(s)	243, 384, 386, 431, 527
SspMI	CTAG	2 cut(s)	650, 722
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	3 cut(s)	216, 338, 583
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	4 cut(s)	333, 381, 628, 905
TaqI	TCGA	2 cut(s)	27, 78
TasI	AATT	4 cut(s)	259, 403, 954, 996
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	32, 247, 410
Tru1I	TTAA	2 cut(s)	375, 399
Tru9I	TTAA	2 cut(s)	375, 399
TscAI	CASTG	3 cut(s)	633, 680, 908
TseI	GCWGC	5 cut(s)	275, 322, 448, 451, 797
TspDTI	ATGAA	5 cut(s)	17, 118, 244, 732, 765
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	3 cut(s)	633, 680, 908
VpaK11BI	GGWCC	3 cut(s)	529, 668, 833
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	259, 403
XceI	RCATGY	2 cut(s)	282, 425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	650, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.