Rorug07G0089900

CCR4-NOT transcription complex subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
7040128 .. 7048435
8308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0089900.1

Sequence Viewer

Length: 1239 bp
ATGGTCCTCATTAGAAGAGCTCCATATAATGGAAGATTGAATCTTTTGATTAATACCCAAAAGATGAAAATTTTGACTCTAGCTATCATCGTACCCACTTCTCTCTTGCTCTGGATGAGGCACCTGGAAAGAAAATGGCACCTTCTTGTCATAAGTTTGGTACTTCTGTTAGCTGTGCTAGTGCTGGGGTTAAGCTTACCATGTTCAGATGCTATTCAGATGAATAAGGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTAAGTTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACATTCACTTTCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAACAAGGGAATCCTATTCCTCTTCATGAGACTTATCTGCATCATTGGGTTATTGAAAGATATTACGCCCAGGCAAGTTATGTGGAACCAGAGCTGAATGGTTTCGAGGATATTAAAGATCCGGATTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACTAGAAAGACAGATACACATGTACTGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACGAGGTCAGCCGTTGAGGCCAGGGTACACGGGGGGTTTGCACTGCTGTTATGATGGTACACGGTGCAGCGTCAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACGGATCATTCAGGAGGACTGTCTCTTCAACATGATTGCCAGGACGGACGGGTTCTATGTTCATCAGTACCAATATATGGGCAAAGCGAGGAAGTAGGAGACGAGGCTGGTTACATTGTAGGAATGTCAACTTGCTATCCACATCCGGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTGTGGGATCTAATTACAGCAGCTCGCGGCCGCATATCGGAGTCATGGGCCTCTTCTACATTTTGGTTGCAGAGCACTTGCCAAAGTCCTCCTTGCTTAGCTTGGACTCTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

46.33

Weight (kDa)

6.57

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 78 - 327 2.7e-119 Stress up-regulated Nod 19
SURNod19 PF07712 316 - 399 3.6e-34 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 708
AccB1I GGYRCC 2 cut(s) 120, 138
AccB7I CCANNNNNTGG 2 cut(s) 29, 1016
AccII CGCG 1 cut(s) 1147
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 2 cut(s) 1147, 1151
AclWI GGATC 5 cut(s) 479, 587, 600, 951, 1135
AcoI YGGCCR 1 cut(s) 1148
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 7 cut(s) 93, 162, 545, 588, 776, 808, 1008
AfiI CCNNNNNNNGG 4 cut(s) 29, 1016, 1085, 1157
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 4 cut(s) 40, 349, 422, 968
AjnI CCWGG 6 cut(s) 123, 236, 277, 435, 769, 978
AluBI AGCT 7 cut(s) 20, 83, 173, 195, 460, 1143, 1221
AluI AGCT 7 cut(s) 20, 83, 173, 195, 460, 1143, 1221
Alw21I GWGCWC 2 cut(s) 22, 1197
Alw26I GTCTC 5 cut(s) 259, 389, 966, 1032, 1106
AlwI GGATC 5 cut(s) 479, 587, 600, 951, 1135
Ama87I CYCGRG 2 cut(s) 554, 681
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 3 cut(s) 767, 1148, 1168
ApeKI GCWGC 2 cut(s) 816, 1140
ApoI RAATTY 1 cut(s) 69
AseI ATTAAT 1 cut(s) 51
Asp700I GAANNNNTTC 2 cut(s) 344, 467
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 2 cut(s) 4, 1168
AsuC2I CCSGG 1 cut(s) 1086
AvaI CYCGRG 2 cut(s) 554, 681
AvaII GGWCC 1 cut(s) 4
BaeI ACNNNNGTAYC 4 cut(s) 152, 185, 570, 603
BamHI GGATCC 1 cut(s) 592
BanI GGYRCC 2 cut(s) 120, 138
BanII GRGCYC 2 cut(s) 22, 1091
Bbv12I GWGCWC 2 cut(s) 22, 1197
BbvI GCAGC 2 cut(s) 828, 1152
BccI CCATC 4 cut(s) 645, 740, 797, 1100
BceAI ACGGC 1 cut(s) 745
BciT130I CCWGG 6 cut(s) 125, 238, 279, 437, 771, 980
BcnI CCSGG 1 cut(s) 1086
BcoDI GTCTC 5 cut(s) 259, 389, 966, 1032, 1106
BfaI CTAG 4 cut(s) 80, 179, 243, 567
BfmI CTRYAG 1 cut(s) 621
BfuAI ACCTGC 1 cut(s) 708
BglI GCCNNNNNGGC 1 cut(s) 766
BisI GCNGC 4 cut(s) 817, 1141, 1148, 1151
BlpI GCTNAGC 1 cut(s) 1217
BlsI GCNGC 4 cut(s) 818, 1142, 1149, 1152
BmcAI AGTACT 1 cut(s) 545
Bme1390I CCNGG 7 cut(s) 125, 238, 279, 437, 771, 980, 1086
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 2 cut(s) 554, 681
BmgT120I GGNCC 2 cut(s) 4, 1168
BmiI GGNNCC 5 cut(s) 122, 140, 276, 453, 594
BmrFI CCNGG 7 cut(s) 125, 238, 279, 437, 771, 980, 1086
BmsI GCATC 4 cut(s) 199, 415, 645, 695
BoxI GACNNNNGTC 1 cut(s) 556
Bpu1102I GCTNAGC 1 cut(s) 1217
BpuEI CTTGAG 1 cut(s) 880
BpuMI CCSGG 1 cut(s) 1086
Bsa29I ATCGAT 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 917
BsaJI CCNNGG 3 cut(s) 278, 435, 770
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 1016, 1085, 1157
Bse1I ACTGG 1 cut(s) 594
Bse8I GATNNNNATC 1 cut(s) 917
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 6 cut(s) 125, 238, 279, 437, 771, 980
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 278, 435, 770
BseGI GGATG 5 cut(s) 120, 660, 710, 1081, 1111
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 4 cut(s) 29, 1016, 1085, 1157
BseNI ACTGG 1 cut(s) 594
BseRI GAGGAG 1 cut(s) 659
BseX3I CGGCCG 1 cut(s) 1148
BseXI GCAGC 2 cut(s) 828, 1152
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 835
Bsh1236I CGCG 1 cut(s) 1147
Bsh1285I CGRYCG 1 cut(s) 1151
BshFI GGCC 3 cut(s) 769, 1150, 1170
BshNI GGYRCC 2 cut(s) 120, 138
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 1151
BsiHKAI GWGCWC 2 cut(s) 22, 1197
BsiHKCI CYCGRG 2 cut(s) 554, 681
BsiSI CCGG 2 cut(s) 488, 1085
BslI CCNNNNNNNGG 4 cut(s) 29, 1016, 1085, 1157
BsmAI GTCTC 5 cut(s) 259, 389, 966, 1032, 1106
BsmBI CGTCTC 1 cut(s) 1032
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 3 cut(s) 769, 1150, 1170
BsoBI CYCGRG 2 cut(s) 554, 681
Bsp1286I GDGCHC 3 cut(s) 22, 1091, 1197
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
Bsp1720I GCTNAGC 1 cut(s) 1217
BspACI CCGC 2 cut(s) 1147, 1151
BspANI GGCC 3 cut(s) 769, 1150, 1170
BspDI ATCGAT 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 1147
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 5 cut(s) 122, 140, 276, 453, 594
BspMAI CTGCAG 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 708
BspPI GGATC 5 cut(s) 479, 587, 600, 951, 1135
BspQI GCTCTTC 1 cut(s) 10
BspT107I GGYRCC 2 cut(s) 120, 138
BsrI ACTGG 1 cut(s) 594
BssECI CCNNGG 3 cut(s) 278, 435, 770
BssMI GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
Bst2UI CCWGG 6 cut(s) 125, 238, 279, 437, 771, 980
Bst4CI ACNGT 3 cut(s) 813, 871, 960
Bst6I CTCTTC 5 cut(s) 10, 393, 969, 1178, 1234
BstAPI GCANNNNNTGC 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 1145
BstDEI CTNAG 2 cut(s) 261, 1217
BstF5I GGATG 5 cut(s) 120, 660, 710, 1081, 1111
BstFNI CGCG 1 cut(s) 1147
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 6 cut(s) 363, 487, 595, 727, 946, 1130
BstMAI GTCTC 5 cut(s) 259, 389, 966, 1032, 1106
BstMBI GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
BstMCI CGRYCG 1 cut(s) 1151
BstMWI GCNNNNNNNGC 2 cut(s) 714, 766
BstNI CCWGG 6 cut(s) 125, 238, 279, 437, 771, 980
BstNSI RCATGY 1 cut(s) 587
BstPAI GACNNNNGTC 1 cut(s) 556
BstSCI CCNGG 7 cut(s) 123, 236, 277, 435, 769, 978, 1084
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 1147
BstV1I GCAGC 2 cut(s) 828, 1152
BstX2I RGATCY 3 cut(s) 484, 592, 1127
BstYI RGATCY 3 cut(s) 484, 592, 1127
BstZI CGGCCG 1 cut(s) 1148
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 769, 1150, 1170
BsuTUI ATCGAT 1 cut(s) 363
BtsCI GGATG 5 cut(s) 120, 660, 710, 1081, 1111
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 4 cut(s) 708, 790, 867, 930
BveI ACCTGC 1 cut(s) 708
Cac8I GCNNGC 1 cut(s) 1145
CciI TCATGA 1 cut(s) 391
CciNI GCGGCCGC 1 cut(s) 1148
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 2 cut(s) 4, 1168
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 808
Csp6I GTAC 7 cut(s) 92, 161, 544, 587, 775, 807, 1007
CspCI CAANNNNNGTGG 2 cut(s) 429, 464
CviAII CATG 6 cut(s) 201, 392, 584, 668, 971, 1165
CviQI GTAC 7 cut(s) 92, 161, 544, 587, 775, 807, 1007
DdeI CTNAG 2 cut(s) 261, 1217
DpnI GATC 6 cut(s) 362, 486, 594, 726, 945, 1129
DpnII GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
EaeI YGGCCR 1 cut(s) 1148
EagI CGGCCG 1 cut(s) 1148
Eam1104I CTCTTC 5 cut(s) 10, 393, 969, 1178, 1234
EarI CTCTTC 5 cut(s) 10, 393, 969, 1178, 1234
Ecl136II GAGCTC 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 1148
Eco24I GRGCYC 2 cut(s) 22, 1091
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 1148
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 375
Eco88I CYCGRG 2 cut(s) 554, 681
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 6 cut(s) 123, 236, 277, 435, 769, 978
EcoT38I GRGCYC 2 cut(s) 22, 1091
Esp3I CGTCTC 1 cut(s) 1032
FaeI CATG 6 cut(s) 204, 395, 587, 671, 974, 1168
FalI AAGNNNNNCTT 2 cut(s) 1196, 1228
FatI CATG 6 cut(s) 200, 391, 583, 667, 970, 1164
Fnu4HI GCNGC 4 cut(s) 817, 1141, 1148, 1151
FokI GGATG 5 cut(s) 127, 667, 717, 1068, 1118
FriOI GRGCYC 2 cut(s) 22, 1091
Fsp4HI GCNGC 4 cut(s) 817, 1141, 1148, 1151
FspBI CTAG 4 cut(s) 80, 179, 243, 567
GlaI GCGC 1 cut(s) 688
GluI GCNGC 4 cut(s) 817, 1141, 1148, 1151
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 3 cut(s) 769, 1150, 1170
HapII CCGG 2 cut(s) 488, 1085
HgaI GACGC 1 cut(s) 808
HhaI GCGC 1 cut(s) 689
Hin1II CATG 6 cut(s) 204, 395, 587, 671, 974, 1168
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 1 cut(s) 1068
HindII GTYRAC 1 cut(s) 1068
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 9 cut(s) 40, 76, 376, 552, 628, 893, 1114, 1161, 1226
HpaII CCGG 2 cut(s) 488, 1085
Hpy166II GTNNAC 3 cut(s) 777, 809, 1068
Hpy188I TCNGA 5 cut(s) 208, 219, 562, 892, 1160
Hpy188III TCNNGA 6 cut(s) 112, 392, 488, 844, 910, 951
Hpy8I GTNNAC 3 cut(s) 777, 809, 1068
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 813, 871, 960
HpyCH4V TGCA 8 cut(s) 290, 406, 623, 708, 717, 790, 816, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 714, 766
HpyF3I CTNAG 2 cut(s) 261, 1217
Hsp92II CATG 6 cut(s) 204, 395, 587, 671, 974, 1168
HspAI GCGC 1 cut(s) 687
Kpn2I TCCGGA 1 cut(s) 487
Kzo9I GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 2 cut(s) 828, 1152
LweI GCATC 4 cut(s) 199, 415, 645, 695
MaeI CTAG 4 cut(s) 80, 179, 243, 567
MaeIII GTNAC 3 cut(s) 736, 928, 1049
MalI GATC 6 cut(s) 362, 486, 594, 726, 945, 1129
MboI GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
MboII GAAGA 6 cut(s) 27, 45, 380, 956, 1165, 1221
MflI RGATCY 3 cut(s) 484, 592, 1127
MhlI GDGCHC 3 cut(s) 22, 1091, 1197
MluCI AATT 2 cut(s) 69, 1132
MlyI GAGTC 5 cut(s) 70, 546, 1108, 1170, 1220
MmeI TCCRAC 1 cut(s) 252
MroI TCCGGA 1 cut(s) 487
MroXI GAANNNNTTC 2 cut(s) 344, 467
MseI TTAA 5 cut(s) 51, 191, 231, 480, 495
MspI CCGG 2 cut(s) 488, 1085
MspR9I CCNGG 7 cut(s) 125, 238, 279, 437, 771, 980, 1086
Mva1269I GAATGC 1 cut(s) 719
MvaI CCWGG 6 cut(s) 125, 238, 279, 437, 771, 980
MvnI CGCG 1 cut(s) 1147
MwoI GCNNNNNNNGC 2 cut(s) 714, 766
NciI CCSGG 1 cut(s) 1086
NdeII GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
NlaIII CATG 6 cut(s) 204, 395, 587, 671, 974, 1168
NlaIV GGNNCC 5 cut(s) 122, 140, 276, 453, 594
NmuCI GTSAC 1 cut(s) 928
NotI GCGGCCGC 1 cut(s) 1148
NspI RCATGY 1 cut(s) 587
PagI TCATGA 1 cut(s) 391
PaqCI CACCTGC 1 cut(s) 708
PciI ACATGT 1 cut(s) 583
PciSI GCTCTTC 1 cut(s) 10
PctI GAATGC 1 cut(s) 719
PdmI GAANNNNTTC 2 cut(s) 344, 467
PfeI GAWTC 4 cut(s) 40, 376, 628, 893
PflFI GACNNNGTC 1 cut(s) 753
PflMI CCANNNNNTGG 2 cut(s) 29, 1016
PkrI GCNGC 4 cut(s) 818, 1142, 1149, 1152
PleI GAGTC 5 cut(s) 70, 546, 1108, 1169, 1220
PpsI GAGTC 5 cut(s) 70, 546, 1108, 1169, 1220
PscI ACATGT 1 cut(s) 583
PshAI GACNNNNGTC 1 cut(s) 556
PshBI ATTAAT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 6 cut(s) 123, 236, 277, 435, 769, 978
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 6 cut(s) 123, 236, 277, 435, 769, 978
PspN4I GGNNCC 5 cut(s) 122, 140, 276, 453, 594
PspPI GGNCC 2 cut(s) 4, 1168
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 3 cut(s) 484, 592, 1127
PsyI GACNNNGTC 1 cut(s) 753
RsaI GTAC 7 cut(s) 93, 162, 545, 588, 776, 808, 1008
RsaNI GTAC 7 cut(s) 92, 161, 544, 587, 775, 807, 1007
SacI GAGCTC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 5 cut(s) 51, 191, 231, 480, 495
SatI GCNGC 4 cut(s) 817, 1141, 1148, 1151
Sau3AI GATC 6 cut(s) 360, 484, 592, 724, 943, 1127
Sau96I GGNCC 2 cut(s) 4, 1168
ScaI AGTACT 1 cut(s) 545
SchI GAGTC 5 cut(s) 70, 546, 1108, 1170, 1220
ScrFI CCNGG 7 cut(s) 125, 238, 279, 437, 771, 980, 1086
SduI GDGCHC 3 cut(s) 22, 1091, 1197
SfaNI GCATC 4 cut(s) 199, 415, 645, 695
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
Sse9I AATT 2 cut(s) 69, 1132
SsiI CCGC 2 cut(s) 1147, 1151
SspMI CTAG 4 cut(s) 80, 179, 243, 567
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 7 cut(s) 123, 236, 277, 435, 769, 978, 1084
TaaI ACNGT 3 cut(s) 813, 871, 960
TaqI TCGA 2 cut(s) 363, 471
TasI AATT 2 cut(s) 69, 1132
TatI WGTACW 2 cut(s) 543, 586
TauI GCSGC 2 cut(s) 1150, 1153
TfiI GAWTC 4 cut(s) 40, 376, 628, 893
Tru1I TTAA 5 cut(s) 51, 191, 231, 480, 495
Tru9I TTAA 5 cut(s) 51, 191, 231, 480, 495
TscAI CASTG 4 cut(s) 715, 797, 874, 937
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 2 cut(s) 816, 1140
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 7 cut(s) 80, 236, 353, 380, 381, 656, 990
TspGWI ACGGA 2 cut(s) 956, 999
TspRI CASTG 4 cut(s) 715, 797, 874, 937
Tth111I GACNNNGTC 1 cut(s) 753
Van91I CCANNNNNTGG 2 cut(s) 29, 1016
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 1 cut(s) 69
XceI RCATGY 1 cut(s) 587
XmnI GAANNNNTTC 2 cut(s) 344, 467
XspI CTAG 4 cut(s) 80, 179, 243, 567
ZrmI AGTACT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.