Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006134

Physical Location & Seq

Genomic Coordinates Forward (+)

7060470 .. 7066035

Gene Structure 5566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACATTTGCATTGTTTTCTTCGTATCGAAGTTGCAAGAATCTTTGTCAATGCTCGAGTCTTCGCTGAGGAACTATGGCATTTCATATACTCCAGGTAAGAATTCCATGGTATTGTCAGCAACCAGAGGTACCAAGGAGCCAGATATCATTGGCAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCAATGGCTGATCCTTTTATCTTTGAATCACATTCTGATTTCAGGCAATAGAATTATTGGATTGCGTGCAAACTTGCCTCATCAAAATTGGGAATCAAGAAGGTTGACTCTCCTCATTATATGGGATCAAGGAGCTAGATGTGCTGAAGCTCACTTTTTTTGCCTCTATCTTATCTCTTCTATTCGGTACAGGAGGAATACCGTGAACGATGGGAATGTCTTTGCCACTCCCTACAGATACTTGCTGAAGTGGTGGAGTGTAATGTATTTCTTAACCATTTATATTGTTTTGTGCAGCAACTCAGTTGGGAAAAGAATGGAATTGTGCTTAAAGAAGCATGGCTTTTCTTGCAAACTGATTGCTGCGGCCGAGTGTTACATGATAGTCTCCAAAACTACAAACGCTGGGGATCCAGATATTACTGACAAGATTTGGGATTTCCTTCAACTTTTGTCAATTGATGTTGAGCCTTCTAAGGCAATAGAAGTACTGAATGGCCGTCTGCATTATGACTTCATCCCGACAGGGTATAGATATGGTGGGTTCTGTTCAAAATTTGGGATCACTGAGGAGCAATTTGCTGAAGTGGTGTGGCCACGTATTGAGCGCGGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2363

Protein Analysis

269

Amino Acids

30.89

Weight (kDa)

8.86

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18420 AT5G18420 AT5G18420 AT5G18420
fragaria_vesca	FvH4_5g20280 FvH4_5g20280
malus_domestica	MD04G1052500.v1.1 MD06G1047700.v1.1
prunus_persica	Prupe.5G058000_v2.0.a1
pyrus_communis	pycom04g04630 pycom06g04070
rosa_chinensis	RchiOBHm_Chr7g0205341
rosa_laevigata	RLG00000003386
rosa_multiflora	Rmu_sc0009725.1_g000008 Rmu_ssc0000004.1_g000021
rosa_roxburghii	Rroxscaffold_3G00252440
rosa_rugosa	Rorug07G0089900 Rorug07G0090000 Rorug07G0090000 Rorug07G0090000 Rorug07G0090100 Rorug07G0090200
rosa_samantha	Rh7AG220600 Rh7BG216800 Rh7CG233600 Rh7DG227500
rosa_wichuraiana	Rw7G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	131
AccII	CGCG	1 cut(s)	801
AciI	CCGC	2 cut(s)	557, 801
AclWI	GGATC	5 cut(s)	196, 324, 596, 609, 761
AcoI	YGGCCR	3 cut(s)	558, 688, 785
AcsI	RAATTY	2 cut(s)	103, 746
AcuI	CTGAAG	3 cut(s)	357, 458, 795
AfaI	GTAC	3 cut(s)	133, 380, 681
AgsI	TTSAA	4 cut(s)	176, 217, 638, 744
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	3 cut(s)	169, 326, 341
AluI	AGCT	3 cut(s)	169, 326, 341
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	5 cut(s)	196, 324, 596, 609, 761
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	3 cut(s)	558, 688, 785
ApeKI	GCWGC	3 cut(s)	166, 486, 554
ApoI	RAATTY	2 cut(s)	103, 746
Asp718I	GGTACC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	801
AvaI	CYCGRG	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	787
BamHI	GGATCC	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	178, 498, 541
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	583
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	5 cut(s)	167, 487, 555, 558, 802
BlsI	GCNGC	5 cut(s)	168, 488, 556, 559, 803
BmcAI	AGTACT	1 cut(s)	681
Bme1390I	CCNGG	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	133, 141, 603
BmrFI	CCNGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	791
BsaJI	CCNNGG	2 cut(s)	108, 135
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	108, 135
BseGI	GGATG	1 cut(s)	708
BseMII	CTCAG	3 cut(s)	59, 507, 750
BseRI	GAGGAG	2 cut(s)	293, 776
BseX3I	CGGCCG	1 cut(s)	558
BseXI	GCAGC	3 cut(s)	178, 498, 541
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	505
Bsh1236I	CGCG	1 cut(s)	801
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	3 cut(s)	560, 690, 787
BshNI	GGYRCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	560, 690, 787
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	201, 316, 601, 753
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	557, 801
BspANI	GGCC	3 cut(s)	560, 690, 787
BspCNI	CTCAG	3 cut(s)	60, 506, 751
BspFNI	CGCG	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	133, 141, 603
BspPI	GGATC	5 cut(s)	196, 324, 596, 609, 761
BspT107I	GGYRCC	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	108, 135
BssMI	GATC	4 cut(s)	201, 316, 601, 753
BssT1I	CCWWGG	2 cut(s)	108, 135
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	68, 493, 666, 759
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	708
BstFNI	CGCG	1 cut(s)	801
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	4 cut(s)	204, 319, 604, 756
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	4 cut(s)	201, 316, 601, 753
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 540
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	3 cut(s)	178, 498, 541
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BstZI	CGGCCG	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	560, 690, 787
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	132, 379, 680
CviAII	CATG	3 cut(s)	109, 530, 571
CviQI	GTAC	3 cut(s)	132, 379, 680
DdeI	CTNAG	4 cut(s)	68, 493, 666, 759
DpnI	GATC	4 cut(s)	203, 318, 603, 755
DpnII	GATC	4 cut(s)	201, 316, 601, 753
EaeI	YGGCCR	3 cut(s)	558, 688, 785
EagI	CGGCCG	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	108, 135
Eco32I	GATATC	1 cut(s)	148
Eco52I	CGGCCG	1 cut(s)	558
Eco57I	CTGAAG	3 cut(s)	357, 458, 795
Eco88I	CYCGRG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	108, 135
ErhI	CCWWGG	2 cut(s)	108, 135
FaeI	CATG	3 cut(s)	112, 533, 574
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FatI	CATG	3 cut(s)	108, 529, 570
Fnu4HI	GCNGC	5 cut(s)	167, 487, 555, 558, 802
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	5 cut(s)	167, 487, 555, 558, 802
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	5 cut(s)	167, 487, 555, 558, 802
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	560, 690, 787
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	3 cut(s)	112, 533, 574
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	2 cut(s)	186, 297
HindII	GTYRAC	2 cut(s)	186, 297
HinfI	GANTC	5 cut(s)	41, 59, 217, 284, 298
Hpy166II	GTNNAC	3 cut(s)	186, 297, 397
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	3 cut(s)	288, 605, 712
Hpy8I	GTNNAC	3 cut(s)	186, 297, 397
HpyAV	CCTTC	3 cut(s)	285, 644, 672
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	6 cut(s)	12, 37, 260, 486, 543, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 540
HpyF3I	CTNAG	4 cut(s)	68, 493, 666, 759
HpySE526I	ACGT	1 cut(s)	790
Hsp92II	CATG	3 cut(s)	112, 533, 574
HspAI	GCGC	1 cut(s)	799
KpnI	GGTACC	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	201, 316, 601, 753
LmnI	GCTCC	4 cut(s)	139, 174, 323, 763
LpnPI	CCDG	9 cut(s)	81, 108, 139, 156, 219, 367, 582, 618, 702
Lsp1109I	GCAGC	3 cut(s)	178, 498, 541
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	4 cut(s)	203, 318, 603, 755
MboI	GATC	4 cut(s)	201, 316, 601, 753
MboII	GAAGA	3 cut(s)	13, 54, 360
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	787
MluCI	AATT	7 cut(s)	103, 243, 277, 512, 648, 746, 767
MluNI	TGGCCA	1 cut(s)	787
MlyI	GAGTC	2 cut(s)	68, 292
MnlI	CCTC	7 cut(s)	63, 122, 279, 314, 365, 378, 754
Mox20I	TGGCCA	1 cut(s)	787
MscI	TGGCCA	1 cut(s)	787
MseI	TTAA	2 cut(s)	464, 521
Msp20I	TGGCCA	1 cut(s)	787
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	2 cut(s)	332, 540
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	201, 316, 601, 753
NlaIII	CATG	3 cut(s)	112, 533, 574
NlaIV	GGNNCC	3 cut(s)	133, 141, 603
NmeAIII	GCCGAG	1 cut(s)	586
PaeR7I	CTCGAG	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	41, 217, 284
PkrI	GCNGC	5 cut(s)	168, 488, 556, 559, 803
PleI	GAGTC	2 cut(s)	67, 292
PpsI	GAGTC	2 cut(s)	67, 292
Ppu21I	YACGTR	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	133, 141, 603
PspXI	VCTCGAGB	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	3 cut(s)	133, 380, 681
RsaNI	GTAC	3 cut(s)	132, 379, 680
SaqAI	TTAA	2 cut(s)	464, 521
SatI	GCNGC	5 cut(s)	167, 487, 555, 558, 802
Sau3AI	GATC	4 cut(s)	201, 316, 601, 753
ScaI	AGTACT	1 cut(s)	681
SchI	GAGTC	2 cut(s)	68, 292
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	7 cut(s)	100, 133, 171, 296, 328, 343, 793
SfcI	CTRYAG	1 cut(s)	424
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	7 cut(s)	103, 243, 277, 512, 648, 746, 767
SsiI	CCGC	2 cut(s)	557, 801
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	2 cut(s)	108, 135
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	2 cut(s)	29, 57
TasI	AATT	7 cut(s)	103, 243, 277, 512, 648, 746, 767
TatI	WGTACW	1 cut(s)	679
TauI	GCSGC	2 cut(s)	560, 804
TfiI	GAWTC	3 cut(s)	41, 217, 284
Tru1I	TTAA	2 cut(s)	464, 521
Tru9I	TTAA	2 cut(s)	464, 521
TscAI	CASTG	1 cut(s)	763
TseI	GCWGC	3 cut(s)	166, 486, 554
TspDTI	ATGAA	3 cut(s)	17, 75, 697
TspRI	CASTG	1 cut(s)	763
XapI	RAATTY	2 cut(s)	103, 746
XhoI	CTCGAG	1 cut(s)	56
XspI	CTAG	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.