AT5G18840
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6282881 .. 6286767
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18840.1

Sequence Viewer

Length: 1449 bp
ATGGCCATTAGGGAAATCAAAGATGTAGAGAGGGGTGAAATAGTGAATAAGGTAGAAGATCTTGGGAAACCATTTTTGACTCATGAAGATGATGAAAAAGAGAGTGAGAATAATGAATCATATTTGATGGTTCTCTTCAGTACTTTTGTTGCTGTCTGTGGCTCCTTTGAGTTTGGCTCTTGTGTTGGATACTCAGCGCCTACTCAGTCATCTATAAGACAAGATCTCAATCTCTCCCTTGCAGAGTTCTCCATGTTTGGATCCATCTTAACTATCGGTGCAATGCTTGGTGCTGTTATGAGTGGGAAAATTTCAGATTTCTCCGGCCGAAAAGGGGCAATGAGGACATCAGCTTGCTTCTGCATTACAGGTTGGCTCGCTGTCTTCTTCACCAAGGGGGCATTGTTACTTGATGTAGGAAGGTTCTTTACAGGATATGGAATTGGAGTTTTTTCTTATGTGGTCCCTGTGTACATTGCTGAGATATCTCCCAAGAATCTCCGAGGTGGACTCACAACACTGAACCAACTCATGATTGTGATCGGCTCATCGGTTTCTTTCTTGATCGGATCTCTCATTTCTTGGAAAACTCTTGCCCTAACCGGACTTGCTCCCTGCATTGTTTTGCTCTTTGGCTTGTGCTTCATACCCGAATCTCCTCGATGGCTGGCAAAAGCAGGCCATGAGAAAGAGTTTCGCGTAGCCCTGCAAAAGCTGCGAGGAAAAGATGCAGATATCACAAATGAAGCAGACGGTATTCAAGTCTCGATTCAAGCTCTAGAGATTCTTCCAAAAGCAAGAATCCAAGACCTTGTGTCCAAGAAATATGGTCGATCTGTCATCATTGGTGTTTCCCTGATGGTATTCCAACAGTTTGTTGGAATCAATGGGATCGGATTCTACGCAAGTGAAACGTTTGTAAAAGCCGGATTTACCTCTGGGAAACTAGGAACAATCGCTATCGCTTGTGTTCAGGTGCCAATAACTGTTCTTGGAACAATCTTGATAGATAAATCTGGACGAAGGCCACTAATTATGATTTCAGCTGGTGGTATCTTCTTGGGATGCATACTCACAGGCACATCTTTCTTACTCAAGGGACAGAGCTTGTTGCTTGAATGGGTCCCTTCCTTAGCCGTTGGAGGTGTACTTATCTATGTAGCTGCTTTCTCCATCGGAATGGGACCTGTTCCTTGGGTGATAATGTCTGAGATATTTCCGATAAACGTAAAGGGAATCGCAGGAAGCTTAGTGGTACTAGTGAATTGGTCTGGTGCTTGGGCTGTTTCTTACACTTTCAACTTCCTCATGAGCTGGAGCTCTCCAGGTACATTCTATTTGTACTCGGCTTTTGCAGCTGCGACGATAATATTTGTGGCGAAGATGGTGCCAGAGACGAAAGGGAAGACACTGGAAGAGATCCAAGCTTGTATTCGAAGAGAAACATAA

Protein Analysis

482

Amino Acids

51.99

Weight (kDa)

8.47

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 50 - 475 1.5e-88 Sugar (and other) transporter
MFS_1 PF07690 64 - 425 2e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 976, 1387
AccII CGCG 1 cut(s) 699
AclI AACGTT 1 cut(s) 914
AclWI GGATC 5 cut(s) 255, 268, 577, 899, 1414
AcoI YGGCCR 2 cut(s) 3, 325
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 121
AfaI GTAC 6 cut(s) 142, 473, 1149, 1257, 1330, 1343
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 4 cut(s) 761, 773, 1118, 1300
AhdI GACNNNNNGTC 1 cut(s) 814
AhlI ACTAGT 1 cut(s) 1258
AjnI CCWGG 1 cut(s) 1324
AjuI GAANNNNNNNTTGG 2 cut(s) 1416, 1448
Alw21I GWGCWC 1 cut(s) 1322
Alw26I GTCTC 2 cut(s) 769, 1388
AlwI GGATC 5 cut(s) 255, 268, 577, 899, 1414
AoxI GGCC 4 cut(s) 3, 325, 679, 1025
ApeKI GCWGC 4 cut(s) 715, 1163, 1355, 1358
ApoI RAATTY 1 cut(s) 309
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 3 cut(s) 463, 1123, 1184
AsuHPI GGTGA 3 cut(s) 47, 382, 1210
AsuII TTCGAA 1 cut(s) 1435
AvaII GGWCC 3 cut(s) 463, 1123, 1184
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 260
BanI GGYRCC 2 cut(s) 976, 1387
BanII GRGCYC 1 cut(s) 1322
BarI GAAGNNNNNNTAC 2 cut(s) 412, 444
BbsI GAAGAC 2 cut(s) 376, 1412
Bbv12I GWGCWC 1 cut(s) 1322
BbvI GCAGC 4 cut(s) 702, 1150, 1345, 1367
BccI CCATC 6 cut(s) 121, 272, 657, 853, 1181, 1378
BceAI ACGGC 1 cut(s) 1121
BcgI CGANNNNNNTGC 2 cut(s) 1369, 1403
BciT130I CCWGG 1 cut(s) 1326
BciVI GTATCC 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 769, 1388
BcuI ACTAGT 1 cut(s) 1258
BfaI CTAG 3 cut(s) 779, 947, 1259
BfoI RGCGCY 1 cut(s) 200
BfuI GTATCC 1 cut(s) 182
BglII AGATCT 2 cut(s) 58, 223
BisI GCNGC 4 cut(s) 716, 1164, 1356, 1359
BlsI GCNGC 4 cut(s) 717, 1165, 1357, 1360
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 1326
Bme18I GGWCC 3 cut(s) 463, 1123, 1184
BmeRI GACNNNNNGTC 1 cut(s) 814
BmgT120I GGNCC 3 cut(s) 463, 1123, 1184
BmiI GGNNCC 8 cut(s) 163, 262, 465, 978, 1124, 1125, 1185, 1389
BmrFI CCNGG 1 cut(s) 1326
BmsI GCATC 2 cut(s) 718, 1055
BpiI GAAGAC 2 cut(s) 376, 1412
BplI GAGNNNNNCTC 4 cut(s) 161, 193, 495, 527
BpmI CTGGAG 2 cut(s) 1308, 1336
Bpu10I CCTNAGC 1 cut(s) 1132
Bpu14I TTCGAA 1 cut(s) 1435
BpuEI CTTGAG 1 cut(s) 1079
BsaBI GATNNNNATC 2 cut(s) 228, 539
BsaJI CCNNGG 3 cut(s) 393, 502, 1193
BsaWI WCCGGW 1 cut(s) 602
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 1416
Bse3DI GCAATG 3 cut(s) 288, 345, 474
Bse8I GATNNNNATC 2 cut(s) 228, 539
BseBI CCWGG 1 cut(s) 1326
BseDI CCNNGG 3 cut(s) 393, 502, 1193
BseGI GGATG 1 cut(s) 1070
BseJI GATNNNNATC 2 cut(s) 228, 539
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 3 cut(s) 288, 345, 474
BseMII CTCAG 4 cut(s) 207, 218, 471, 1200
BseNI ACTGG 1 cut(s) 1416
BseRI GAGGAG 1 cut(s) 648
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 4 cut(s) 702, 1150, 1345, 1367
Bsh1236I CGCG 1 cut(s) 699
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 4 cut(s) 5, 327, 681, 1027
BshNI GGYRCC 2 cut(s) 976, 1387
BsiEI CGRYCG 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 1322
BsiSI CCGG 3 cut(s) 324, 603, 927
BslFI GGGAC 4 cut(s) 449, 1109, 1113, 1197
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 769, 1388
BsmBI CGTCTC 1 cut(s) 1388
BsmFI GGGAC 4 cut(s) 449, 1109, 1113, 1197
BsnI GGCC 4 cut(s) 5, 327, 681, 1027
Bsp119I TTCGAA 1 cut(s) 1435
Bsp1286I GDGCHC 1 cut(s) 1322
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
BspANI GGCC 4 cut(s) 5, 327, 681, 1027
BspCNI CTCAG 4 cut(s) 206, 217, 472, 1201
BspFNI CGCG 1 cut(s) 699
BspHI TCATGA 3 cut(s) 82, 531, 1308
BspLI GGNNCC 8 cut(s) 163, 262, 465, 978, 1124, 1125, 1185, 1389
BspPI GGATC 5 cut(s) 255, 268, 577, 899, 1414
BspT104I TTCGAA 1 cut(s) 1435
BspT107I GGYRCC 2 cut(s) 976, 1387
BsrDI GCAATG 3 cut(s) 288, 345, 474
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 1 cut(s) 1416
BssECI CCNNGG 3 cut(s) 393, 502, 1193
BssMI GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
BssT1I CCWWGG 2 cut(s) 393, 1193
Bst2UI CCWGG 1 cut(s) 1326
Bst4CI ACNGT 3 cut(s) 755, 873, 988
Bst6I CTCTTC 3 cut(s) 140, 1410, 1432
BstAPI GCANNNNNTGC 1 cut(s) 715
BstAUI TGTACA 1 cut(s) 471
BstBI TTCGAA 1 cut(s) 1435
BstC8I GCNNGC 4 cut(s) 355, 378, 669, 679
BstDEI CTNAG 6 cut(s) 193, 204, 480, 1132, 1209, 1249
BstF5I GGATG 1 cut(s) 1070
BstFNI CGCG 1 cut(s) 699
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 9 cut(s) 61, 226, 263, 543, 567, 572, 836, 894, 1422
BstMAI GTCTC 2 cut(s) 769, 1388
BstMBI GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 715, 1355
BstNI CCWGG 1 cut(s) 1326
BstSCI CCNGG 1 cut(s) 1324
BstUI CGCG 1 cut(s) 699
BstV1I GCAGC 4 cut(s) 702, 1150, 1345, 1367
BstV2I GAAGAC 2 cut(s) 376, 1412
BstX2I RGATCY 5 cut(s) 58, 223, 260, 569, 1419
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstYI RGATCY 5 cut(s) 58, 223, 260, 569, 1419
BstZI CGGCCG 1 cut(s) 325
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 4 cut(s) 5, 327, 681, 1027
BtsCI GGATG 1 cut(s) 1070
BtsIMutI CAGTG 2 cut(s) 518, 1409
Cac8I GCNNGC 4 cut(s) 355, 378, 669, 679
CciI TCATGA 3 cut(s) 82, 531, 1308
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 463, 1123, 1184
Csp6I GTAC 6 cut(s) 141, 472, 1148, 1256, 1329, 1342
CviAII CATG 5 cut(s) 83, 253, 532, 683, 1309
CviQI GTAC 6 cut(s) 141, 472, 1148, 1256, 1329, 1342
DdeI CTNAG 6 cut(s) 193, 204, 480, 1132, 1209, 1249
DpnI GATC 9 cut(s) 60, 225, 262, 542, 566, 571, 835, 893, 1421
DpnII GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
DriI GACNNNNNGTC 1 cut(s) 814
EaeI YGGCCR 2 cut(s) 3, 325
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 140, 1410, 1432
Eam1105I GACNNNNNGTC 1 cut(s) 814
EarI CTCTTC 3 cut(s) 140, 1410, 1432
Ecl136II GAGCTC 1 cut(s) 1320
EclXI CGGCCG 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 393, 1193
Eco24I GRGCYC 1 cut(s) 1322
Eco32I GATATC 2 cut(s) 486, 736
Eco47I GGWCC 3 cut(s) 463, 1123, 1184
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 1320
Eco57I CTGAAG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 1320
EcoO109I RGGNCCY 2 cut(s) 1123, 1184
EcoRII CCWGG 1 cut(s) 1324
EcoRV GATATC 2 cut(s) 486, 736
EcoT14I CCWWGG 2 cut(s) 393, 1193
EcoT22I ATGCAT 1 cut(s) 1070
EcoT38I GRGCYC 1 cut(s) 1322
ErhI CCWWGG 2 cut(s) 393, 1193
Esp3I CGTCTC 1 cut(s) 1388
FaeI CATG 5 cut(s) 86, 256, 535, 686, 1312
FaqI GGGAC 4 cut(s) 449, 1109, 1113, 1197
FatI CATG 5 cut(s) 82, 252, 531, 682, 1308
Fnu4HI GCNGC 4 cut(s) 716, 1164, 1356, 1359
FokI GGATG 1 cut(s) 1077
FriOI GRGCYC 1 cut(s) 1322
Fsp4HI GCNGC 4 cut(s) 716, 1164, 1356, 1359
FspBI CTAG 3 cut(s) 779, 947, 1259
GlaI GCGC 1 cut(s) 198
GluI GCNGC 4 cut(s) 716, 1164, 1356, 1359
GsuI CTGGAG 2 cut(s) 1308, 1336
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 4 cut(s) 5, 327, 681, 1027
HapII CCGG 3 cut(s) 324, 603, 927
HhaI GCGC 1 cut(s) 199
Hin1II CATG 5 cut(s) 86, 256, 535, 686, 1312
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 2 cut(s) 1246, 1425
HpaII CCGG 3 cut(s) 324, 603, 927
HphI GGTGA 3 cut(s) 47, 382, 1210
Hpy166II GTNNAC 3 cut(s) 472, 509, 1148
Hpy188I TCNGA 7 cut(s) 316, 503, 569, 896, 1178, 1210, 1221
Hpy188III TCNNGA 8 cut(s) 83, 532, 562, 766, 779, 1003, 1017, 1309
Hpy8I GTNNAC 3 cut(s) 472, 509, 1148
Hpy99I CGWCG 1 cut(s) 1366
HpyAV CCTTC 3 cut(s) 414, 1017, 1137
HpyCH4III ACNGT 3 cut(s) 755, 873, 988
HpyCH4IV ACGT 2 cut(s) 914, 1227
HpyCH4V TGCA 8 cut(s) 242, 281, 363, 618, 709, 731, 1068, 1355
HpyF10VI GCNNNNNNNGC 2 cut(s) 715, 1355
HpyF3I CTNAG 6 cut(s) 193, 204, 480, 1132, 1209, 1249
HpySE526I ACGT 2 cut(s) 914, 1227
Hsp92II CATG 5 cut(s) 86, 256, 535, 686, 1312
HspAI GCGC 1 cut(s) 197
KflI GGGWCCC 1 cut(s) 1123
Kzo9I GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
LmnI GCTCC 3 cut(s) 167, 616, 1317
Lsp1109I GCAGC 4 cut(s) 702, 1150, 1345, 1367
LweI GCATC 2 cut(s) 718, 1055
MaeI CTAG 3 cut(s) 779, 947, 1259
MaeII ACGT 2 cut(s) 914, 1227
MaeIII GTNAC 1 cut(s) 405
MalI GATC 9 cut(s) 60, 225, 262, 542, 566, 571, 835, 893, 1421
MboI GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
MflI RGATCY 5 cut(s) 58, 223, 260, 569, 1419
MhlI GDGCHC 1 cut(s) 1322
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 309, 441, 1032, 1264
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 73, 504
MmeI TCCRAC 4 cut(s) 166, 859, 892, 1120
MnlI CCTC 8 cut(s) 24, 336, 497, 669, 713, 946, 1136, 1316
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1070
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 3 cut(s) 87, 536, 1178
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 1046, 1358
MspI CCGG 3 cut(s) 324, 603, 927
MspR9I CCNGG 1 cut(s) 1326
MvaI CCWGG 1 cut(s) 1326
MvnI CGCG 1 cut(s) 699
MwoI GCNNNNNNNGC 2 cut(s) 715, 1355
NdeII GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
NlaIII CATG 5 cut(s) 86, 256, 535, 686, 1312
NlaIV GGNNCC 8 cut(s) 163, 262, 465, 978, 1124, 1125, 1185, 1389
NmeAIII GCCGAG 1 cut(s) 1325
NsiI ATGCAT 1 cut(s) 1070
NspV TTCGAA 1 cut(s) 1435
PagI TCATGA 3 cut(s) 82, 531, 1308
PfeI GAWTC 9 cut(s) 116, 496, 653, 769, 784, 801, 882, 897, 1236
PkrI GCNGC 4 cut(s) 717, 1165, 1357, 1360
PleI GAGTC 2 cut(s) 73, 504
PpsI GAGTC 2 cut(s) 73, 504
PpuMI RGGWCCY 2 cut(s) 1123, 1184
Psp124BI GAGCTC 1 cut(s) 1322
Psp1406I AACGTT 1 cut(s) 914
Psp5II RGGWCCY 2 cut(s) 1123, 1184
Psp6I CCWGG 1 cut(s) 1324
PspGI CCWGG 1 cut(s) 1324
PspN4I GGNNCC 8 cut(s) 163, 262, 465, 978, 1124, 1125, 1185, 1389
PspPI GGNCC 3 cut(s) 463, 1123, 1184
PspPPI RGGWCCY 2 cut(s) 1123, 1184
PsuI RGATCY 5 cut(s) 58, 223, 260, 569, 1419
PvuII CAGCTG 2 cut(s) 1046, 1358
RsaI GTAC 6 cut(s) 142, 473, 1149, 1257, 1330, 1343
RsaNI GTAC 6 cut(s) 141, 472, 1148, 1256, 1329, 1342
RseI CAYNNNNRTG 3 cut(s) 87, 536, 1178
SacI GAGCTC 1 cut(s) 1322
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 4 cut(s) 716, 1164, 1356, 1359
Sau3AI GATC 9 cut(s) 58, 223, 260, 540, 564, 569, 833, 891, 1419
Sau96I GGNCC 3 cut(s) 463, 1123, 1184
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 2 cut(s) 73, 504
ScrFI CCNGG 1 cut(s) 1326
SduI GDGCHC 1 cut(s) 1322
SfaNI GCATC 2 cut(s) 718, 1055
SfuI TTCGAA 1 cut(s) 1435
SinI GGWCC 3 cut(s) 463, 1123, 1184
SmiMI CAYNNNNRTG 3 cut(s) 87, 536, 1178
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
SpeI ACTAGT 1 cut(s) 1258
Sse9I AATT 4 cut(s) 309, 441, 1032, 1264
SspI AATATT 1 cut(s) 1371
SspMI CTAG 3 cut(s) 779, 947, 1259
SstI GAGCTC 1 cut(s) 1322
StyD4I CCNGG 1 cut(s) 1324
StyI CCWWGG 2 cut(s) 393, 1193
TaaI ACNGT 3 cut(s) 755, 873, 988
TaiI ACGT 2 cut(s) 917, 1230
TaqI TCGA 4 cut(s) 661, 767, 832, 1435
TasI AATT 4 cut(s) 309, 441, 1032, 1264
TatI WGTACW 4 cut(s) 140, 471, 1147, 1341
TfiI GAWTC 9 cut(s) 116, 496, 653, 769, 784, 801, 882, 897, 1236
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 2 cut(s) 525, 1416
TseI GCWGC 4 cut(s) 715, 1163, 1355, 1358
TspDTI ATGAA 5 cut(s) 99, 108, 129, 634, 759
TspRI CASTG 2 cut(s) 525, 1416
VpaK11BI GGWCC 3 cut(s) 463, 1123, 1184
XapI RAATTY 1 cut(s) 309
XbaI TCTAGA 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
XspI CTAG 3 cut(s) 779, 947, 1259
ZrmI AGTACT 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.