Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020995.1

Orthogroup ID

OG0004465

Physical Location & Seq

Genomic Coordinates Reverse (-)

17684 .. 20334

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020995.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgctgggtgctatcacaagtggtaggattgcggactttcatggtcgaaagggggcaatgagcatgtcagccactttctgtattacaggatggctagccatctatttctctgagggagctttgtcacttgacataggaaggtttttaactggatatggaattggagttttctcttatgtgatcccaatatttatagcagaaatcgcgcccaaaaatctccgtggagggcttacaacattaaatcagctcatgattgttactggatcctcagtttcatttgtattaggaacaattataagttggaggacactagctatagctggaatccttccctgcattgtcttgcttgttggtctatggtttgttcccgagtcccctagatggctggcaaagattggccatgagaaagagttccaagttgcactgcaaagacttcgcggaaaatatgcagatatatctgatgaaacagctgaaataaaagaatatattgtcactctacaaagccttccaaaatccggagtgttggatttgtttcaaagcaaatacattcgtttggtgattattggagttggattgatggtatttcaacagttaggaggtattaatgggataggattctatgcaagtcaaacctttgaagaagctggtatctcaagcaaaattggaaccatagcttatgcatgtgttcaggtcccaattactgtagtgggagcaatgcttatcgataggtcaggaaggagacctcttattatggtttcagcaactggaacattcctaggctgttttctagcaggaacttctttctttcttaaggaatatggtttgctgcttaattgggtaccaacaatagctgtgtctggtgtgctgatttacattgcatttttctcaatcggaatgggagcagttccttgggtgataatgtctgagatctttccaatccatgtgaaaggagctgctggtagcttagtggtgcttgtgaactggttgggtgcttgggcagtctcttatacttacaacttccttatgagctggagttcctcaagaacttattatatgtattctggattctctttgttgactatcctatttgtggcaaagttggtgccagagaccaaaggaaaaacactggaagaaattcaggcatgcatcaagtcagatagaagagaacaagatatcttgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

394

Amino Acids

43.0

Weight (kDa)

8.97

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18840
fragaria_vesca	FvH4_4g16900 FvH4_4g16900 FvH4_4g16900
malus_domestica	MD13G1175900.v1.1
prunus_persica	Prupe.1G144800_v2.0.a1 Prupe.1G144800_v2.0.a1 Prupe.1G144900_v2.0.a1
pyrus_communis	pycom13g15160
rosa_chinensis	RchiOBHm_Chr4g0420471 RchiOBHm_Chr4g0420481
rosa_laevigata	RLG00000007758 RLG00000007760
rosa_multiflora	Rmu_sc0002248.1_g000042 Rmu_sc0020995.1_g000009
rosa_roxburghii	Rroxscaffold_5G00363090 Rroxscaffold_5G00363100
rosa_rugosa	Rorug04G0164000 Rorug04G0164000 Rorug04G0164100 Rorug04G0164200 Rorug04G0164200
rosa_samantha	Rh4AG225700 Rh4AG225800 Rh4BG228300 Rh4BG228400 Rh4CG240000 Rh4CG240100 Rh4DG224100 Rh4DG224200
rosa_wichuraiana	Rw4G019480 Rw4G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
Acc65I	GGTACC	1 cut(s)	838
AccB1I	GGYRCC	2 cut(s)	838, 1102
AccII	CGCG	2 cut(s)	206, 438
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	2 cut(s)	32, 438
AclWI	GGATC	3 cut(s)	175, 258, 271
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	1134
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	3 cut(s)	381, 515, 1090
AflII	CTTAAG	1 cut(s)	809
AgsI	TTSAA	4 cut(s)	536, 587, 638, 1180
Alw26I	GTCTC	3 cut(s)	733, 1006, 1103
AlwI	GGATC	3 cut(s)	175, 258, 271
AlwNI	CAGNNNCTG	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	826, 953
ApoI	RAATTY	1 cut(s)	1134
AseI	ATTAAT	1 cut(s)	603
Asp700I	GAANNNNTTC	2 cut(s)	410, 1134
Asp718I	GGTACC	1 cut(s)	838
AspA2I	CCTAGG	1 cut(s)	775
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	691
AsuHPI	GGTGA	2 cut(s)	568, 925
AsuNHI	GCTAGC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	691
AvrII	CCTAGG	1 cut(s)	775
BalI	TGGCCA	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	2 cut(s)	838, 1102
BbvI	GCAGC	2 cut(s)	813, 940
BccI	CCATC	4 cut(s)	84, 107, 375, 571
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BcoDI	GTCTC	3 cut(s)	733, 1006, 1103
BfaI	CTAG	5 cut(s)	95, 311, 378, 776, 788
BfmI	CTRYAG	2 cut(s)	315, 702
BfrI	CTTAAG	1 cut(s)	809
BglII	AGATCT	1 cut(s)	927
BisI	GCNGC	2 cut(s)	827, 954
BlnI	CCTAGG	1 cut(s)	775
BlsI	GCNGC	2 cut(s)	828, 955
Bme18I	GGWCC	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	5 cut(s)	265, 667, 693, 840, 1104
BmsI	GCATC	1 cut(s)	1155
BmtI	GCTAGC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	1051
BpuEI	CTTGAG	2 cut(s)	637, 1024
Bsa29I	ATCGAT	1 cut(s)	723
BsaI	GGTCTC	2 cut(s)	733, 1103
BsaJI	CCNNGG	3 cut(s)	220, 775, 908
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 515, 1090
Bse1I	ACTGG	5 cut(s)	154, 265, 769, 986, 1131
Bse3DI	GCAATG	3 cut(s)	63, 720, 873
BseAI	TCCGGA	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	220, 775, 908
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	3 cut(s)	381, 515, 1090
BseMI	GCAATG	3 cut(s)	63, 720, 873
BseMII	CTCAG	3 cut(s)	102, 282, 915
BseNI	ACTGG	5 cut(s)	154, 265, 769, 986, 1131
BseXI	GCAGC	2 cut(s)	813, 940
BseYI	CCCAGC	1 cut(s)	4
Bsh1236I	CGCG	2 cut(s)	206, 438
BshFI	GGCC	1 cut(s)	399
BshNI	GGYRCC	2 cut(s)	838, 1102
BshVI	ATCGAT	1 cut(s)	723
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	358, 677
BslI	CCNNNNNNNGG	3 cut(s)	381, 515, 1090
BsmAI	GTCTC	3 cut(s)	733, 1006, 1103
BsmFI	GGGAC	2 cut(s)	358, 677
BsnI	GGCC	1 cut(s)	399
Bso31I	GGTCTC	2 cut(s)	733, 1103
BsoBI	CYCGRG	1 cut(s)	368
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	180, 263, 927
BspACI	CCGC	2 cut(s)	32, 438
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	3 cut(s)	103, 281, 916
BspDI	ATCGAT	1 cut(s)	723
BspEI	TCCGGA	1 cut(s)	515
BspFNI	CGCG	2 cut(s)	206, 438
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	265, 667, 693, 840, 1104
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	3 cut(s)	175, 258, 271
BspT107I	GGYRCC	2 cut(s)	838, 1102
BspTI	CTTAAG	1 cut(s)	809
BspTNI	GGTCTC	2 cut(s)	733, 1103
BsrDI	GCAATG	3 cut(s)	63, 720, 873
BsrI	ACTGG	5 cut(s)	154, 265, 769, 986, 1131
BssECI	CCNNGG	3 cut(s)	220, 775, 908
BssMI	GATC	3 cut(s)	180, 263, 927
BssT1I	CCWWGG	2 cut(s)	775, 908
Bst4CI	ACNGT	2 cut(s)	591, 703
Bst6I	CTCTTC	1 cut(s)	1156
BstAFI	CTTAAG	1 cut(s)	809
BstC8I	GCNNGC	3 cut(s)	96, 387, 1144
BstDEI	CTNAG	4 cut(s)	111, 268, 924, 964
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	2 cut(s)	206, 438
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	183, 266, 930
BstMAI	GTCTC	3 cut(s)	733, 1006, 1103
BstMBI	GATC	3 cut(s)	180, 263, 927
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	3 cut(s)	67, 684, 1146
BstSFI	CTRYAG	2 cut(s)	315, 702
BstUI	CGCG	2 cut(s)	206, 438
BstV1I	GCAGC	2 cut(s)	813, 940
BstX2I	RGATCY	2 cut(s)	263, 927
BstYI	RGATCY	2 cut(s)	263, 927
Bsu15I	ATCGAT	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	399
BsuTUI	ATCGAT	1 cut(s)	723
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	422, 1124
Cac8I	GCNNGC	3 cut(s)	96, 387, 1144
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	691
ClaI	ATCGAT	1 cut(s)	723
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	7 cut(s)	41, 64, 250, 401, 681, 941, 1143
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	4 cut(s)	111, 268, 924, 964
DpnI	GATC	3 cut(s)	182, 265, 929
DpnII	GATC	3 cut(s)	180, 263, 927
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	1156
EarI	CTCTTC	1 cut(s)	1156
Eco130I	CCWWGG	2 cut(s)	775, 908
Eco31I	GGTCTC	2 cut(s)	733, 1103
Eco32I	GATATC	1 cut(s)	1174
Eco47I	GGWCC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRV	GATATC	1 cut(s)	1174
EcoT14I	CCWWGG	2 cut(s)	775, 908
EcoT22I	ATGCAT	2 cut(s)	682, 1148
ErhI	CCWWGG	2 cut(s)	775, 908
FaeI	CATG	7 cut(s)	44, 67, 253, 404, 684, 944, 1146
FaqI	GGGAC	2 cut(s)	358, 677
FatI	CATG	7 cut(s)	40, 63, 249, 400, 680, 940, 1142
Fnu4HI	GCNGC	2 cut(s)	827, 954
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	827, 954
FspBI	CTAG	5 cut(s)	95, 311, 378, 776, 788
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	827, 954
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	1051
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	1 cut(s)	516
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	7 cut(s)	44, 67, 253, 404, 684, 944, 1146
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HinfI	GANTC	4 cut(s)	324, 371, 615, 1065
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	568, 925
Hpy166II	GTNNAC	2 cut(s)	979, 1077
Hpy188I	TCNGA	5 cut(s)	112, 460, 893, 925, 1156
Hpy188III	TCNNGA	7 cut(s)	250, 368, 516, 732, 1041, 1062, 1177
Hpy8I	GTNNAC	2 cut(s)	979, 1077
HpyAV	CCTTC	4 cut(s)	132, 338, 515, 729
HpyCH4III	ACNGT	2 cut(s)	591, 703
HpyCH4V	TGCA	8 cut(s)	336, 422, 427, 449, 623, 680, 878, 1146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	4 cut(s)	111, 268, 924, 964
Hsp92II	CATG	7 cut(s)	44, 67, 253, 404, 684, 944, 1146
HspAI	GCGC	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	515
KpnI	GGTACC	1 cut(s)	842
Kzo9I	GATC	3 cut(s)	180, 263, 927
LmnI	GCTCC	4 cut(s)	116, 710, 899, 950
Lsp1109I	GCAGC	2 cut(s)	813, 940
LweI	GCATC	1 cut(s)	1155
MaeI	CTAG	5 cut(s)	95, 311, 378, 776, 788
MaeIII	GTNAC	3 cut(s)	123, 256, 490
MalI	GATC	3 cut(s)	182, 265, 929
MboI	GATC	3 cut(s)	180, 263, 927
MboII	GAAGA	3 cut(s)	650, 1142, 1173
MflI	RGATCY	2 cut(s)	263, 927
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	7 cut(s)	159, 291, 660, 696, 832, 1134, 1180
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	3 cut(s)	281, 504, 550
MnlI	CCTC	7 cut(s)	106, 218, 277, 297, 590, 753, 1048
Mox20I	TGGCCA	1 cut(s)	399
Mph1103I	ATGCAT	2 cut(s)	682, 1148
MroI	TCCGGA	1 cut(s)	515
MroXI	GAANNNNTTC	2 cut(s)	410, 1134
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	5 cut(s)	146, 239, 603, 810, 831
Msp20I	TGGCCA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	1 cut(s)	516
MvnI	CGCG	2 cut(s)	206, 438
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	3 cut(s)	180, 263, 927
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	7 cut(s)	44, 67, 253, 404, 684, 944, 1146
NlaIV	GGNNCC	5 cut(s)	265, 667, 693, 840, 1104
NmuCI	GTSAC	2 cut(s)	123, 490
NsiI	ATGCAT	2 cut(s)	682, 1148
NspI	RCATGY	3 cut(s)	67, 684, 1146
PaeI	GCATGC	1 cut(s)	1146
PagI	TCATGA	1 cut(s)	249
PdmI	GAANNNNTTC	2 cut(s)	410, 1134
PfeI	GAWTC	3 cut(s)	324, 615, 1065
PkrI	GCNGC	2 cut(s)	828, 955
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	691
PshBI	ATTAAT	1 cut(s)	603
PsiI	TTATAA	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	691
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	5 cut(s)	265, 667, 693, 840, 1104
PspPI	GGNCC	1 cut(s)	691
PspPPI	RGGWCCY	1 cut(s)	691
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	263, 927
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
SaqAI	TTAA	5 cut(s)	146, 239, 603, 810, 831
SatI	GCNGC	2 cut(s)	827, 954
Sau3AI	GATC	3 cut(s)	180, 263, 927
Sau96I	GGNCC	1 cut(s)	691
SchI	GAGTC	1 cut(s)	380
SfaNI	GCATC	1 cut(s)	1155
SfcI	CTRYAG	2 cut(s)	315, 702
SinI	GGWCC	1 cut(s)	691
SmlI	CTYRAG	3 cut(s)	652, 809, 1039
SmoI	CTYRAG	3 cut(s)	652, 809, 1039
SphI	GCATGC	1 cut(s)	1146
Sse9I	AATT	7 cut(s)	159, 291, 660, 696, 832, 1134, 1180
SsiI	CCGC	2 cut(s)	32, 438
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	5 cut(s)	95, 311, 378, 776, 788
StyI	CCWWGG	2 cut(s)	775, 908
TaaI	ACNGT	2 cut(s)	591, 703
TaqI	TCGA	2 cut(s)	46, 723
TasI	AATT	7 cut(s)	159, 291, 660, 696, 832, 1134, 1180
TfiI	GAWTC	3 cut(s)	324, 615, 1065
Tru1I	TTAA	5 cut(s)	146, 239, 603, 810, 831
Tru9I	TTAA	5 cut(s)	146, 239, 603, 810, 831
TscAI	CASTG	2 cut(s)	429, 1131
TseFI	GTSAC	2 cut(s)	123, 490
TseI	GCWGC	2 cut(s)	826, 953
Tsp45I	GTSAC	2 cut(s)	123, 490
TspDTI	ATGAA	3 cut(s)	29, 264, 477
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	429, 1131
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	691
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	1 cut(s)	1134
XceI	RCATGY	3 cut(s)	67, 684, 1146
XmaJI	CCTAGG	1 cut(s)	775
XmnI	GAANNNNTTC	2 cut(s)	410, 1134
XspI	CTAG	5 cut(s)	95, 311, 378, 776, 788
Zsp2I	ATGCAT	2 cut(s)	682, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.