Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004465

Physical Location & Seq

Genomic Coordinates Reverse (-)

48566992 .. 48572422

Gene Structure 5431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGAAAGAAGTCGACAGACATTGAAAATGGGGGTATTAATAGGCATGAGGAGTTGGAGCAGCCTTTCATTCAGCCAAAGAGAGTTGTTGCTCATGAAGATGGTGACAGCGGGAATACTATCAAAAATGGATCAATTGGGATGGTTTTGCTTAGCACAGGCGTTGCAGTTTGCGGCTCTTTCCAATTTGGAATATGTGTGGGCTATTCAGCACCCAGTCAATCTGCTATCAGGAAAGATCTTCGTCTCTCTATAACTGAGGTCCCAGTATTTATAGCCGAAATAGCGCCCAAAAATCTCCGTGGAGGGCTTGCAACATTGAATCAGCTCTTCATTATCCTTGGAGCATCGTTTACGTTCATAATAGGAACAATCTTATCCTGGAGAACATTATCTCTAATCGCAATTTTGCCTTGCATTATCCTGGTTTTGGGTCAATGGTTTATTCCAGAGTCACCTAGATGGCTGGCAAAGGTCGGCCGAGAGGAAGAATTTGAAGTTGCACTACAGAGGCTCCATGGAAAAGATGCTGATGTATCTGGTGAAAAGGCGGAAATTCAAGAATACATAGTTACTTCACAAAGTCTTCCGAAAGCCAATATCTTGGATTTGTTTCAAAGAAGATATATTCGATCTGTCATAATTGGGGTTGGATTAATGGTGTTTCAACAATTTGCTGGTATTAACGGAGTACAATTTTATGCAAGCGAAACCTTTGAAGCAGCTGGATTTTCAGGCAGTATTGGAACCACAGCTTATGCATGTCTTCAGGTCCCAATCACTCTATTAGGAGCATTTCTAATGGATAAGTCAGGAAGGAGAGTTCTCGTAATGGTTTCAGCAGCTGGAATGTTCATAGGCTCTATTCTTGTTGGAATTTCTTTCTCTCTGAAGGGAGATGGTTTGCTACTGGATTGGGTACCGATACTTGCTGTGTCCGGTGTGCTGGTTTACGTTGCATTTTTTTCTATTGGTATGGGAGCAGGACCTTGGGTGATAATGTCCGAGATTTTCCCAATTAATGTGAAGGGAGTGGGTGGAAGCTTGGTGGTGTTTGTGAACTGGTCTGGTGCTTGGGTAGTTTCCTATACTTACAACTCTCTTATGAACTGGAGTTCCTCAGGAACATACTACCTGTATGGTGCGGTCTGTGTCTTGACAATCCTATTTGTGGCCAAGGTAGTACCAGAGACCAAAGGAAAAACACTAGAAGAAATTCAAGCATCACTCAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

412

Amino Acids

44.49

Weight (kDa)

6.35

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	88 - 408	1.1e-74	Sugar (and other) transporter
MFS_1	PF07690	90 - 357	3.4e-12	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18840
fragaria_vesca	FvH4_4g16900 FvH4_4g16900 FvH4_4g16900
malus_domestica	MD13G1175900.v1.1
prunus_persica	Prupe.1G144800_v2.0.a1 Prupe.1G144800_v2.0.a1 Prupe.1G144900_v2.0.a1
pyrus_communis	pycom13g15160
rosa_chinensis	RchiOBHm_Chr4g0420471 RchiOBHm_Chr4g0420481
rosa_laevigata	RLG00000007758 RLG00000007760
rosa_multiflora	Rmu_sc0002248.1_g000042 Rmu_sc0020995.1_g000009
rosa_roxburghii	Rroxscaffold_5G00363090 Rroxscaffold_5G00363100
rosa_rugosa	Rorug04G0164000 Rorug04G0164000 Rorug04G0164100 Rorug04G0164200 Rorug04G0164200
rosa_samantha	Rh4AG225700 Rh4AG225800 Rh4BG228300 Rh4BG228400 Rh4CG240000 Rh4CG240100 Rh4DG224100 Rh4DG224200
rosa_wichuraiana	Rw4G019480 Rw4G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	919
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	4 cut(s)	111, 174, 551, 1145
AclWI	GGATC	1 cut(s)	139
AcoI	YGGCCR	2 cut(s)	478, 1173
AcsI	RAATTY	4 cut(s)	491, 555, 876, 1215
AcuI	CTGAAG	2 cut(s)	752, 911
AfaI	GTAC	3 cut(s)	693, 921, 1185
AfiI	CCNNNNNNNGG	2 cut(s)	430, 1171
AgsI	TTSAA	8 cut(s)	26, 322, 497, 560, 617, 668, 719, 1220
AjnI	CCWGG	2 cut(s)	380, 423
AloI	GAACNNNNNNTCC	4 cut(s)	807, 839, 1100, 1132
AluBI	AGCT	5 cut(s)	328, 725, 755, 845, 1044
AluI	AGCT	5 cut(s)	328, 725, 755, 845, 1044
Alw26I	GTCTC	2 cut(s)	251, 1184
AlwI	GGATC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	2 cut(s)	478, 1173
ApeKI	GCWGC	3 cut(s)	61, 722, 842
ApoI	RAATTY	4 cut(s)	491, 555, 876, 1215
AseI	ATTAAT	3 cut(s)	39, 656, 1020
Asp700I	GAANNNNTTC	1 cut(s)	1215
Asp718I	GGTACC	1 cut(s)	919
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	3 cut(s)	262, 772, 986
AsuHPI	GGTGA	4 cut(s)	116, 447, 554, 1006
AvaII	GGWCC	3 cut(s)	262, 772, 986
AxyI	CCTNAGG	1 cut(s)	1120
BalI	TGGCCA	1 cut(s)	1175
BanI	GGYRCC	1 cut(s)	919
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BbsI	GAAGAC	2 cut(s)	578, 758
BbvI	GCAGC	3 cut(s)	73, 734, 854
BccI	CCATC	4 cut(s)	95, 136, 456, 893
BciT130I	CCWGG	2 cut(s)	382, 425
BcoDI	GTCTC	2 cut(s)	251, 1184
BfaI	CTAG	2 cut(s)	459, 1208
BfmI	CTRYAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	290
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	4 cut(s)	62, 175, 723, 843
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	4 cut(s)	63, 176, 724, 844
Bme1390I	CCNGG	2 cut(s)	382, 425
Bme18I	GGWCC	3 cut(s)	262, 772, 986
BmgT120I	GGNCC	3 cut(s)	262, 772, 986
BmiI	GGNNCC	5 cut(s)	264, 515, 748, 774, 921
BmrFI	CCNGG	2 cut(s)	382, 425
BmrI	ACTGGG	2 cut(s)	210, 260
BmsI	GCATC	3 cut(s)	356, 517, 1232
BmuI	ACTGGG	2 cut(s)	210, 260
BpiI	GAAGAC	2 cut(s)	578, 758
BpmI	CTGGAG	2 cut(s)	403, 1132
Bpu1102I	GCTNAGC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	1184
BsaJI	CCNNGG	5 cut(s)	301, 340, 517, 989, 1176
BsaWI	WCCGGW	1 cut(s)	938
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 1171
Bse1I	ACTGG	5 cut(s)	216, 266, 915, 1067, 1115
Bse21I	CCTNAGG	1 cut(s)	1120
BseBI	CCWGG	2 cut(s)	382, 425
BseDI	CCNNGG	5 cut(s)	301, 340, 517, 989, 1176
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	430, 1171
BseMII	CTCAG	2 cut(s)	249, 1134
BseNI	ACTGG	5 cut(s)	216, 266, 915, 1067, 1115
BseRI	GAGGAG	1 cut(s)	65
BseX3I	CGGCCG	1 cut(s)	478
BseXI	GCAGC	3 cut(s)	73, 734, 854
Bsh1285I	CGRYCG	1 cut(s)	481
BshFI	GGCC	2 cut(s)	480, 1175
BshNI	GGYRCC	1 cut(s)	919
BsiEI	CGRYCG	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	939
BslFI	GGGAC	2 cut(s)	248, 758
BslI	CCNNNNNNNGG	2 cut(s)	430, 1171
BsmAI	GTCTC	2 cut(s)	251, 1184
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	248, 758
BsnI	GGCC	2 cut(s)	480, 1175
Bso31I	GGTCTC	1 cut(s)	1184
Bsp143I	GATC	3 cut(s)	131, 238, 632
Bsp1720I	GCTNAGC	1 cut(s)	152
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	4 cut(s)	111, 174, 551, 1145
BspANI	GGCC	2 cut(s)	480, 1175
BspCNI	CTCAG	2 cut(s)	250, 1133
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	5 cut(s)	264, 515, 748, 774, 921
BspPI	GGATC	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	919
BspTNI	GGTCTC	1 cut(s)	1184
BsrI	ACTGG	5 cut(s)	216, 266, 915, 1067, 1115
BssECI	CCNNGG	5 cut(s)	301, 340, 517, 989, 1176
BssMI	GATC	3 cut(s)	131, 238, 632
BssT1I	CCWWGG	4 cut(s)	340, 517, 989, 1176
Bst2UI	CCWGG	2 cut(s)	382, 425
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	312, 468, 706
BstDEI	CTNAG	3 cut(s)	152, 258, 1120
BstDSI	CCRYGG	2 cut(s)	301, 517
BstF5I	GGATG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	134, 241, 635
BstMAI	GTCTC	2 cut(s)	251, 1184
BstMBI	GATC	3 cut(s)	131, 238, 632
BstMCI	CGRYCG	1 cut(s)	481
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	382, 425
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	2 cut(s)	380, 423
BstSFI	CTRYAG	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	73, 734, 854
BstV2I	GAAGAC	2 cut(s)	578, 758
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	238
BstZI	CGGCCG	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	1120
BsuRI	GGCC	2 cut(s)	480, 1175
BtgI	CCRYGG	2 cut(s)	301, 517
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	312, 468, 706
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	3 cut(s)	262, 772, 986
Csp6I	GTAC	3 cut(s)	692, 920, 1184
CviAII	CATG	5 cut(s)	47, 95, 518, 762, 1236
CviQI	GTAC	3 cut(s)	692, 920, 1184
DdeI	CTNAG	3 cut(s)	152, 258, 1120
DpnI	GATC	3 cut(s)	133, 240, 634
DpnII	GATC	3 cut(s)	131, 238, 632
EaeI	YGGCCR	2 cut(s)	478, 1173
EagI	CGGCCG	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	566
EclXI	CGGCCG	1 cut(s)	478
Eco130I	CCWWGG	4 cut(s)	340, 517, 989, 1176
Eco31I	GGTCTC	1 cut(s)	1184
Eco47I	GGWCC	3 cut(s)	262, 772, 986
Eco52I	CGGCCG	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	752, 911
Eco81I	CCTNAGG	1 cut(s)	1120
EcoO109I	RGGNCCY	3 cut(s)	262, 772, 986
EcoRII	CCWGG	2 cut(s)	380, 423
EcoT14I	CCWWGG	4 cut(s)	340, 517, 989, 1176
EcoT22I	ATGCAT	1 cut(s)	763
ErhI	CCWWGG	4 cut(s)	340, 517, 989, 1176
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	5 cut(s)	50, 98, 521, 765, 1239
FaqI	GGGAC	2 cut(s)	248, 758
FatI	CATG	5 cut(s)	46, 94, 517, 761, 1235
FauI	CCCGC	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	4 cut(s)	62, 175, 723, 843
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	4 cut(s)	62, 175, 723, 843
FspBI	CTAG	2 cut(s)	459, 1208
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	4 cut(s)	62, 175, 723, 843
GsuI	CTGGAG	2 cut(s)	403, 1132
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	480, 1175
HapII	CCGG	1 cut(s)	939
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	5 cut(s)	50, 98, 521, 765, 1239
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	1042
HinfI	GANTC	2 cut(s)	322, 452
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	4 cut(s)	116, 447, 554, 1006
Hpy166II	GTNNAC	4 cut(s)	15, 354, 952, 1060
Hpy188I	TCNGA	3 cut(s)	591, 891, 1006
Hpy188III	TCNNGA	7 cut(s)	95, 232, 449, 560, 813, 1122, 1156
Hpy8I	GTNNAC	4 cut(s)	15, 354, 952, 1060
HpyAV	CCTTC	3 cut(s)	810, 886, 1021
HpyCH4IV	ACGT	2 cut(s)	356, 954
HpyCH4V	TGCA	7 cut(s)	167, 314, 417, 503, 704, 761, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	152, 258, 1120
HpySE526I	ACGT	2 cut(s)	356, 954
Hsp92II	CATG	5 cut(s)	50, 98, 521, 765, 1239
HspAI	GCGC	1 cut(s)	287
KpnI	GGTACC	1 cut(s)	923
Kzo9I	GATC	3 cut(s)	131, 238, 632
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	5 cut(s)	58, 344, 519, 791, 980
Lsp1109I	GCAGC	3 cut(s)	73, 734, 854
LweI	GCATC	3 cut(s)	356, 517, 1232
MaeI	CTAG	2 cut(s)	459, 1208
MaeII	ACGT	2 cut(s)	356, 954
MaeIII	GTNAC	3 cut(s)	104, 453, 571
MalI	GATC	3 cut(s)	133, 240, 634
MboI	GATC	3 cut(s)	131, 238, 632
MboII	GAAGA	8 cut(s)	110, 233, 322, 500, 578, 633, 758, 1223
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	1175
MluNI	TGGCCA	1 cut(s)	1175
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	3 cut(s)	36, 631, 853
MnlI	CCTC	6 cut(s)	43, 253, 299, 478, 504, 1129
Mox20I	TGGCCA	1 cut(s)	1175
Mph1103I	ATGCAT	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	1215
MscI	TGGCCA	1 cut(s)	1175
MseI	TTAA	4 cut(s)	39, 656, 684, 1020
MslI	CAYNNNNRTG	2 cut(s)	99, 460
Msp20I	TGGCCA	1 cut(s)	1175
MspA1I	CMGCKG	3 cut(s)	111, 725, 845
MspI	CCGG	1 cut(s)	939
MspR9I	CCNGG	2 cut(s)	382, 425
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	382, 425
MwoI	GCNNNNNNNGC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	517
NdeII	GATC	3 cut(s)	131, 238, 632
NlaIII	CATG	5 cut(s)	50, 98, 521, 765, 1239
NlaIV	GGNNCC	5 cut(s)	264, 515, 748, 774, 921
NmeAIII	GCCGAG	1 cut(s)	506
NmuCI	GTSAC	2 cut(s)	104, 453
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	1 cut(s)	765
PagI	TCATGA	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	1215
PfeI	GAWTC	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	63, 176, 724, 844
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	3 cut(s)	262, 772, 986
PshBI	ATTAAT	3 cut(s)	39, 656, 1020
Psp5II	RGGWCCY	3 cut(s)	262, 772, 986
Psp6I	CCWGG	2 cut(s)	380, 423
PspGI	CCWGG	2 cut(s)	380, 423
PspN4I	GGNNCC	5 cut(s)	264, 515, 748, 774, 921
PspPI	GGNCC	3 cut(s)	262, 772, 986
PspPPI	RGGWCCY	3 cut(s)	262, 772, 986
PstNI	CAGNNNCTG	1 cut(s)	845
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	725, 845
RsaI	GTAC	3 cut(s)	693, 921, 1185
RsaNI	GTAC	3 cut(s)	692, 920, 1184
RseI	CAYNNNNRTG	2 cut(s)	99, 460
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	4 cut(s)	39, 656, 684, 1020
SatI	GCNGC	4 cut(s)	62, 175, 723, 843
Sau3AI	GATC	3 cut(s)	131, 238, 632
Sau96I	GGNCC	3 cut(s)	262, 772, 986
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	382, 425
SfaNI	GCATC	3 cut(s)	356, 517, 1232
SfcI	CTRYAG	1 cut(s)	506
SinI	GGWCC	3 cut(s)	262, 772, 986
SmiMI	CAYNNNNRTG	2 cut(s)	99, 460
SsiI	CCGC	4 cut(s)	111, 174, 551, 1145
SspMI	CTAG	2 cut(s)	459, 1208
StyD4I	CCNGG	2 cut(s)	380, 423
StyI	CCWWGG	4 cut(s)	340, 517, 989, 1176
TaiI	ACGT	2 cut(s)	359, 957
TaqI	TCGA	2 cut(s)	14, 631
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	4 cut(s)	39, 656, 684, 1020
Tru9I	TTAA	4 cut(s)	39, 656, 684, 1020
TseFI	GTSAC	2 cut(s)	104, 453
TseI	GCWGC	3 cut(s)	61, 722, 842
Tsp45I	GTSAC	2 cut(s)	104, 453
TspDTI	ATGAA	6 cut(s)	58, 111, 322, 349, 844, 1121
TspGWI	ACGGA	2 cut(s)	290, 702
VpaK11BI	GGWCC	3 cut(s)	262, 772, 986
VspI	ATTAAT	3 cut(s)	39, 656, 1020
XapI	RAATTY	4 cut(s)	491, 555, 876, 1215
XceI	RCATGY	1 cut(s)	765
XmiI	GTMKAC	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	1215
XspI	CTAG	2 cut(s)	459, 1208
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.