Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004465

Physical Location & Seq

Genomic Coordinates Reverse (-)

28540717 .. 28542705

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0164000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGACGTCCTTGACATGTCTTGCCATCTATACCATGGACGTCCTTTTCGTATTTCATATATATCTACAACTTTTGGTTGCTCAATATTAATCCTAACCACATTAATTAAAAAATTTGAAGTACTTGCAACAGCTAGCCTGCATCTGAAGTTATTGATCGAAGTTGAGAGAAAGATGGCGAGAACAGATATCAATAGCAGAAACAGGAGATGGTCTCTTGAGGGGATGACTGCACTTGTCACCGGTGGAACCAAAGGGATTGGGTATGCTGTTGTGGAGGAATTGGCTGGACTAGGGGCAAGCGTACATACTTGTGCTAGAAATGAAGTCCTACTCAATGACTGCTTGAGTCAATGGAAGTTGAAGGGTTTTCATCAAGTTACTGGTTCGATCTGTGATATGGTCTTAAAAACCCAACGAGAGGAGCTAATACACAAGGTCTCATTGCTGTTTAATGGGAAACTTAACATCCTTATAAACAACGTGGGAACAAATATACCAAAACCAACAACCGAGTACACAGCTGAAGATTACTCATTTATAATGAGTACCAATCTTGAATCCACATACCACTTGTGCCAACTTGCACATCCTCTTCTCAAAGATTCAGGAACTGGTAACATAATTCTTTTGTCATCTGTGGCTGGTGTGGTATCACTTGGGAAGATTGGGAGTATATATGCTGCCACTAAAGGAGCAATGAATCAATTGGCAAAAAACTTGGCGTGTGAATGGGCGAAAGATAAGATAAGGACCAACAGTGTTGCACCTTGGTTCATCAGAACTCCCCTCGCTGAACCTTATTTGAATGATGTAAAAACTTTGGAGGCCGTGAACTCTCGAACCCCTTTAGGACGGCCTGGAGAGCCAGAAGAGGTGTCTGCATTGGTAGCATTTTTGTGCCTCCCCGCAGCCTCTTACATAACTGGACAGACTATTTGCATCGACGGAGGGATGACTATCAATGGCTTTTCATTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

327

Amino Acids

35.79

Weight (kDa)

8.31

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	77 - 268	8.1e-42	short chain dehydrogenase
KR	PF08659	77 - 240	1.4e-06	KR domain
adh_short_C2	PF13561	85 - 320	5.1e-52	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18840
fragaria_vesca	FvH4_4g16900 FvH4_4g16900 FvH4_4g16900
malus_domestica	MD13G1175900.v1.1
prunus_persica	Prupe.1G144800_v2.0.a1 Prupe.1G144800_v2.0.a1 Prupe.1G144900_v2.0.a1
pyrus_communis	pycom13g15160
rosa_chinensis	RchiOBHm_Chr4g0420471 RchiOBHm_Chr4g0420481
rosa_laevigata	RLG00000007758 RLG00000007760
rosa_multiflora	Rmu_sc0002248.1_g000042 Rmu_sc0020995.1_g000009
rosa_roxburghii	Rroxscaffold_5G00363090 Rroxscaffold_5G00363100
rosa_rugosa	Rorug04G0164000 Rorug04G0164000 Rorug04G0164100 Rorug04G0164200 Rorug04G0164200
rosa_samantha	Rh4AG225700 Rh4AG225800 Rh4BG228300 Rh4BG228400 Rh4CG240000 Rh4CG240100 Rh4DG224100 Rh4DG224200
rosa_wichuraiana	Rw4G019480 Rw4G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	476, 542
AatII	GACGTC	2 cut(s)	9, 43
AciI	CCGC	1 cut(s)	909
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	2 cut(s)	167, 546
AcyI	GRCGYC	2 cut(s)	6, 40
AfaI	GTAC	4 cut(s)	123, 306, 518, 550
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	4 cut(s)	119, 364, 560, 808
AjnI	CCWGG	1 cut(s)	859
AluBI	AGCT	3 cut(s)	134, 427, 524
AluI	AGCT	3 cut(s)	134, 427, 524
Alw26I	GTCTC	2 cut(s)	219, 445
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	2 cut(s)	828, 857
ApeKI	GCWGC	2 cut(s)	683, 911
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	4 cut(s)	30, 62, 921, 953
AseI	ATTAAT	2 cut(s)	89, 104
AsiGI	ACCGGT	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	232
AsuNHI	GCTAGC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	670, 923
BccI	CCATC	3 cut(s)	33, 169, 204
BceAI	ACGGC	2 cut(s)	815, 872
BciT130I	CCWGG	1 cut(s)	861
BcoDI	GTCTC	2 cut(s)	219, 445
BfaI	CTAG	3 cut(s)	135, 293, 318
BisI	GCNGC	2 cut(s)	684, 912
BlsI	GCNGC	2 cut(s)	685, 913
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	861
Bme18I	GGWCC	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	2 cut(s)	151, 951
BmtI	GCTAGC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpmI	CTGGAG	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	239, 367
BsaBI	GATNNNNATC	1 cut(s)	959
BsaHI	GRCGYC	2 cut(s)	6, 40
BsaI	GGTCTC	2 cut(s)	219, 445
BsaJI	CCNNGG	2 cut(s)	34, 770
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	3 cut(s)	388, 619, 931
Bse3DI	GCAATG	2 cut(s)	443, 705
Bse8I	GATNNNNATC	1 cut(s)	959
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	2 cut(s)	34, 770
BseGI	GGATG	4 cut(s)	231, 468, 589, 960
BseJI	GATNNNNATC	1 cut(s)	959
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	2 cut(s)	443, 705
BseNI	ACTGG	3 cut(s)	388, 619, 931
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	670, 923
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	830, 859
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	2 cut(s)	219, 445
BsnI	GGCC	2 cut(s)	830, 859
Bso31I	GGTCTC	2 cut(s)	219, 445
Bsp143I	GATC	2 cut(s)	156, 390
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	909
BspANI	GGCC	2 cut(s)	830, 859
BspLI	GGNNCC	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	138
BspTNI	GGTCTC	2 cut(s)	219, 445
BsrDI	GCAATG	2 cut(s)	443, 705
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	388, 619, 931
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	34, 770
BssMI	GATC	2 cut(s)	156, 390
BssNI	GRCGYC	2 cut(s)	6, 40
BssT1I	CCWWGG	2 cut(s)	34, 770
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	1 cut(s)	761
Bst6I	CTCTTC	2 cut(s)	600, 867
BstACI	GRCGYC	2 cut(s)	6, 40
BstC8I	GCNNGC	3 cut(s)	136, 140, 301
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	4 cut(s)	231, 468, 589, 960
BstKTI	GATC	2 cut(s)	159, 393
BstMAI	GTCTC	2 cut(s)	219, 445
BstMBI	GATC	2 cut(s)	156, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	865, 890
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	859
BstV1I	GCAGC	2 cut(s)	670, 923
BsuRI	GGCC	2 cut(s)	830, 859
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	231, 468, 589, 960
BtsIMutI	CAGTG	1 cut(s)	766
Cac8I	GCNNGC	3 cut(s)	136, 140, 301
CaiI	CAGNNNCTG	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	753
Csp6I	GTAC	4 cut(s)	122, 305, 517, 549
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	2 cut(s)	16, 35
CviQI	GTAC	4 cut(s)	122, 305, 517, 549
DpnI	GATC	2 cut(s)	158, 392
DpnII	GATC	2 cut(s)	156, 390
Eam1104I	CTCTTC	2 cut(s)	600, 867
EarI	CTCTTC	2 cut(s)	600, 867
Eco130I	CCWWGG	2 cut(s)	34, 770
Eco31I	GGTCTC	2 cut(s)	219, 445
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	167, 546
EcoRII	CCWGG	1 cut(s)	859
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	34, 770
ErhI	CCWWGG	2 cut(s)	34, 770
FaeI	CATG	2 cut(s)	19, 38
FatI	CATG	2 cut(s)	15, 34
FauI	CCCGC	1 cut(s)	916
Fnu4HI	GCNGC	2 cut(s)	684, 912
FokI	GGATG	4 cut(s)	238, 455, 576, 967
Fsp4HI	GCNGC	2 cut(s)	684, 912
FspBI	CTAG	3 cut(s)	135, 293, 318
GluI	GCNGC	2 cut(s)	684, 912
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	2 cut(s)	830, 859
HapII	CCGG	1 cut(s)	243
Hin1I	GRCGYC	2 cut(s)	6, 40
Hin1II	CATG	2 cut(s)	19, 38
HinfI	GANTC	4 cut(s)	349, 560, 605, 703
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	519, 835
Hpy188I	TCNGA	2 cut(s)	147, 782
Hpy188III	TCNNGA	4 cut(s)	218, 557, 609, 840
Hpy8I	GTNNAC	2 cut(s)	519, 835
Hpy99I	CGWCG	1 cut(s)	950
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	761
HpyCH4IV	ACGT	3 cut(s)	6, 40, 483
HpyCH4V	TGCA	7 cut(s)	128, 142, 233, 587, 767, 884, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	865, 890
HpySE526I	ACGT	3 cut(s)	6, 40, 483
Hsp92I	GRCGYC	2 cut(s)	6, 40
Hsp92II	CATG	2 cut(s)	19, 38
Kzo9I	GATC	2 cut(s)	156, 390
LmnI	GCTCC	2 cut(s)	424, 695
Lsp1109I	GCAGC	2 cut(s)	670, 923
LweI	GCATC	2 cut(s)	151, 951
MaeI	CTAG	3 cut(s)	135, 293, 318
MaeII	ACGT	3 cut(s)	6, 40, 483
MaeIII	GTNAC	3 cut(s)	238, 379, 617
MalI	GATC	2 cut(s)	158, 392
MboI	GATC	2 cut(s)	156, 390
MboII	GAAGA	4 cut(s)	539, 587, 676, 884
MfeI	CAATTG	1 cut(s)	707
MluCI	AATT	5 cut(s)	105, 113, 281, 624, 707
MlyI	GAGTC	1 cut(s)	358
MseI	TTAA	6 cut(s)	89, 104, 108, 407, 453, 465
MslI	CAYNNNNRTG	3 cut(s)	312, 898, 979
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	861
MunI	CAATTG	1 cut(s)	707
MvaI	CCWGG	1 cut(s)	861
MwoI	GCNNNNNNNGC	2 cut(s)	865, 890
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	156, 390
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	19, 38
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	19
PacI	TTAATTAA	1 cut(s)	108
PciI	ACATGT	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	560, 605, 703
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	685, 913
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PscI	ACATGT	1 cut(s)	15
PshBI	ATTAAT	2 cut(s)	89, 104
PsiI	TTATAA	2 cut(s)	476, 542
Psp6I	CCWGG	1 cut(s)	859
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	753
PstNI	CAGNNNCTG	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	4 cut(s)	123, 306, 518, 550
RsaNI	GTAC	4 cut(s)	122, 305, 517, 549
RseI	CAYNNNNRTG	3 cut(s)	312, 898, 979
SaqAI	TTAA	6 cut(s)	89, 104, 108, 407, 453, 465
SatI	GCNGC	2 cut(s)	684, 912
Sau3AI	GATC	2 cut(s)	156, 390
Sau96I	GGNCC	1 cut(s)	753
ScaI	AGTACT	1 cut(s)	123
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	861
SfaNI	GCATC	2 cut(s)	151, 951
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	3 cut(s)	312, 898, 979
SmlI	CTYRAG	2 cut(s)	218, 346
SmoI	CTYRAG	2 cut(s)	218, 346
Sse9I	AATT	5 cut(s)	105, 113, 281, 624, 707
SsiI	CCGC	1 cut(s)	909
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	3 cut(s)	135, 293, 318
StyD4I	CCNGG	1 cut(s)	859
StyI	CCWWGG	2 cut(s)	34, 770
TaaI	ACNGT	1 cut(s)	761
TaiI	ACGT	3 cut(s)	9, 43, 486
TaqI	TCGA	4 cut(s)	159, 389, 841, 945
TasI	AATT	5 cut(s)	105, 113, 281, 624, 707
TatI	WGTACW	2 cut(s)	121, 516
TfiI	GAWTC	3 cut(s)	560, 605, 703
Tru1I	TTAA	6 cut(s)	89, 104, 108, 407, 453, 465
Tru9I	TTAA	6 cut(s)	89, 104, 108, 407, 453, 465
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	683, 911
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	6 cut(s)	45, 339, 362, 716, 766, 963
TspGWI	ACGGA	1 cut(s)	963
TspRI	CASTG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	753
VspI	ATTAAT	2 cut(s)	89, 104
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	3 cut(s)	135, 293, 318
ZraI	GACGTC	2 cut(s)	7, 41
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.