RchiOBHm_Chr4g0420471
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
46242981 .. 46246793
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39021

Sequence Viewer

Length: 1458 bp
ATGGCAATTGGGCAGTCGACAGACATTGAAAATGGGGGTATTAATAGGCATGAGGAGTTGGAGCAGCCTTTCATTCAGCCAAAGAGAGTTGTTGCTCATGAAGATGGTGACAGCGGGAATACTATCAAAAATGGATCAATTGGGATGGTTTTGCTTAGCACAGGCGTTGCAGTTTGCGGCTCTTTCCAATTTGGAATATGTGTGGGCTATTCAGCACCCAGTCAATCTGCTATCAGGAAAGATCTTCGTCTCTCTATAACTGAGTATTCCATGTTTGGCTCTATCCTATCAATTGGTGCAGTGTTGGGTGCTTTTACAAGTGGTAAGATTGCAGATTCTCTCGGCCGAAAAGGGGCAATGAGGGTGTCTTCTGTCATTTGCACTGCAGGATGGCTAGCCATCTACTTCGCTCAGGGAGCTACATTACTTGATATAGGGAGGTTTCTAACTGGTTATGGAATTTCATCTTTCTCGTATGTGGTCCCAGTATTTATAGCCGAAATAGCGCCCAAAAATCTCCGTGGAGGGCTTGCAACATTGAATCAGCTCTTCATTATCCTTGGAGCATCGTTTACGTTCATAATAGGAACAATCTTATCCTGGAGAACATTATCTCTAATCGCAATTTTGCCTTGCATTATCCTGGTTTTGGGTCAATGGTTTATTCCAGAGTCACCTAGATGGCTGGCAAAGGTTGGCCGAGAGGAAGAATTTGAAGTTGCACTACAGAGGCTCCATGGAAAAGATGCTGATGTATCTGGTGAAAAGGCGGAAATTCAAGAATACATAGTTACTTCACAAAGTCTTCCGAAAGCCAATATCTTGGATTTGTTTCAAAGAAGATATATTCGATCTGTCATAATTGGGGTTGGATTAATGGTGTTTCAACAATTTGCTGGTATCAACGGAGTACAATTTTATGCAAGCGAAACCTTTGAAGCAGCTGGATTTTCAGGCAGTATTGGAACCACAGCTTATGCATGTCTTCAGGTCCCAATCACTCTATTAGGAGCATTTCTAATGGATAAGTCAGGAAGGAGAGTTCTCGTAATGGTTTCAGCAGCTGGAATGTTCATAGGCTCTATTCTTGTTGGAATTTCTTTCTCTCTGAAGGGAGATGGTTTGCTACTGGATTGGGTACCGATACTTGCTGTGTCCGGTGTGCTGGTTTACGTTGCATTTTTTTCGATTGGTATGGGAGCAGGACCTTGGGTGATAATGTCCGAGATTTTCCCAATTAATGTGAAGGGAGTGGGTGGAAGCTTGGTGGTGTTTGTGAACTGGTCTGGTGCTTGGGTAGTTTCCTATACTTACAACTCTCTTATGAACTGGAGTTCCTCAGGAACATACTACCTGTATGGTGCCGTCTGTGTCTTGACAATCCTATTTGTGGCCAAGGTAGTACCAGAGACCAAAGGAAAAACACTAGAAGAAATTCAAGCATCACTCAATCCATGA

Protein Analysis

485

Amino Acids

52.02

Weight (kDa)

6.84

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 59 - 430 9.3e-26 Major Facilitator Superfamily
Sugar_tr PF00083 85 - 481 1.2e-89 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1138
AccB1I GGYRCC 2 cut(s) 1138, 1361
AccI GTMKAC 1 cut(s) 17
AciI CCGC 3 cut(s) 114, 177, 770
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 3 cut(s) 343, 697, 1392
AcsI RAATTY 5 cut(s) 459, 710, 774, 1095, 1434
AcuI CTGAAG 2 cut(s) 971, 1130
AfaI GTAC 3 cut(s) 912, 1140, 1404
AfiI CCNNNNNNNGG 3 cut(s) 352, 649, 1390
AgsI TTSAA 8 cut(s) 29, 541, 716, 779, 836, 887, 938, 1439
AjnI CCWGG 2 cut(s) 599, 642
AloI GAACNNNNNNTCC 4 cut(s) 1026, 1058, 1319, 1351
AluBI AGCT 6 cut(s) 419, 547, 944, 974, 1064, 1263
AluI AGCT 6 cut(s) 419, 547, 944, 974, 1064, 1263
Alw26I GTCTC 2 cut(s) 254, 1403
AlwI GGATC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 1064
AoxI GGCC 3 cut(s) 343, 697, 1392
ApeKI GCWGC 3 cut(s) 64, 941, 1061
ApoI RAATTY 5 cut(s) 459, 710, 774, 1095, 1434
AseI ATTAAT 3 cut(s) 42, 875, 1239
Asp700I GAANNNNTTC 1 cut(s) 1434
Asp718I GGTACC 1 cut(s) 1138
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 481, 991, 1205
AsuHPI GGTGA 4 cut(s) 119, 666, 773, 1225
AsuNHI GCTAGC 1 cut(s) 394
AvaII GGWCC 3 cut(s) 481, 991, 1205
AxyI CCTNAGG 1 cut(s) 1339
BalI TGGCCA 1 cut(s) 1394
BanI GGYRCC 2 cut(s) 1138, 1361
BarI GAAGNNNNNNTAC 2 cut(s) 708, 740
BbsI GAAGAC 3 cut(s) 360, 797, 977
BbvI GCAGC 3 cut(s) 76, 953, 1073
BccI CCATC 6 cut(s) 98, 139, 384, 407, 675, 1112
BceAI ACGGC 1 cut(s) 1349
BcgI CGANNNNNNTGC 2 cut(s) 1167, 1201
BciT130I CCWGG 2 cut(s) 601, 644
BcoDI GTCTC 2 cut(s) 254, 1403
BfaI CTAG 3 cut(s) 395, 678, 1427
BfmI CTRYAG 2 cut(s) 384, 725
BfoI RGCGCY 1 cut(s) 509
BglII AGATCT 1 cut(s) 241
BisI GCNGC 4 cut(s) 65, 178, 942, 1062
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 4 cut(s) 66, 179, 943, 1063
Bme1390I CCNGG 2 cut(s) 601, 644
Bme18I GGWCC 3 cut(s) 481, 991, 1205
BmgT120I GGNCC 3 cut(s) 481, 991, 1205
BmiI GGNNCC 6 cut(s) 483, 734, 967, 993, 1140, 1363
BmrFI CCNGG 2 cut(s) 601, 644
BmrI ACTGGG 2 cut(s) 213, 479
BmsI GCATC 3 cut(s) 575, 736, 1451
BmtI GCTAGC 1 cut(s) 398
BmuI ACTGGG 2 cut(s) 213, 479
BpiI GAAGAC 3 cut(s) 360, 797, 977
BpmI CTGGAG 2 cut(s) 622, 1351
Bpu10I CCTNAGC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 1403
BsaJI CCNNGG 5 cut(s) 520, 559, 736, 1208, 1395
BsaWI WCCGGW 1 cut(s) 1157
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 649, 1390
Bse1I ACTGG 6 cut(s) 219, 454, 485, 1134, 1286, 1334
Bse21I CCTNAGG 1 cut(s) 1339
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 601, 644
BseDI CCNNGG 5 cut(s) 520, 559, 736, 1208, 1395
BseGI GGATG 2 cut(s) 150, 395
BseLI CCNNNNNNNGG 3 cut(s) 352, 649, 1390
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 3 cut(s) 252, 425, 1353
BseNI ACTGG 6 cut(s) 219, 454, 485, 1134, 1286, 1334
BseRI GAGGAG 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 343
BseXI GCAGC 3 cut(s) 76, 953, 1073
BsgI GTGCAG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 3 cut(s) 345, 699, 1394
BshNI GGYRCC 2 cut(s) 1138, 1361
BsiEI CGRYCG 1 cut(s) 346
BsiSI CCGG 1 cut(s) 1158
BslFI GGGAC 2 cut(s) 467, 977
BslI CCNNNNNNNGG 3 cut(s) 352, 649, 1390
BsmAI GTCTC 2 cut(s) 254, 1403
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 467, 977
BsnI GGCC 3 cut(s) 345, 699, 1394
Bso31I GGTCTC 1 cut(s) 1403
Bsp143I GATC 3 cut(s) 134, 241, 851
Bsp1720I GCTNAGC 1 cut(s) 155
Bsp19I CCATGG 1 cut(s) 736
BspACI CCGC 3 cut(s) 114, 177, 770
BspANI GGCC 3 cut(s) 345, 699, 1394
BspCNI CTCAG 3 cut(s) 253, 424, 1352
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 6 cut(s) 483, 734, 967, 993, 1140, 1363
BspMAI CTGCAG 1 cut(s) 388
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 554
BspT107I GGYRCC 2 cut(s) 1138, 1361
BspTNI GGTCTC 1 cut(s) 1403
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 6 cut(s) 219, 454, 485, 1134, 1286, 1334
BssECI CCNNGG 5 cut(s) 520, 559, 736, 1208, 1395
BssMI GATC 3 cut(s) 134, 241, 851
BssT1I CCWWGG 4 cut(s) 559, 736, 1208, 1395
Bst2UI CCWGG 2 cut(s) 601, 644
Bst6I CTCTTC 1 cut(s) 554
BstC8I GCNNGC 4 cut(s) 396, 531, 687, 925
BstDEI CTNAG 4 cut(s) 155, 261, 411, 1339
BstDSI CCRYGG 2 cut(s) 520, 736
BstF5I GGATG 2 cut(s) 150, 395
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 3 cut(s) 137, 244, 854
BstMAI GTCTC 2 cut(s) 254, 1403
BstMBI GATC 3 cut(s) 134, 241, 851
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 416, 503
BstNI CCWGG 2 cut(s) 601, 644
BstNSI RCATGY 1 cut(s) 984
BstSCI CCNGG 2 cut(s) 599, 642
BstSFI CTRYAG 2 cut(s) 384, 725
BstV1I GCAGC 3 cut(s) 76, 953, 1073
BstV2I GAAGAC 3 cut(s) 360, 797, 977
BstX2I RGATCY 1 cut(s) 241
BstXI CCANNNNNNTGG 1 cut(s) 823
BstYI RGATCY 1 cut(s) 241
BstZI CGGCCG 1 cut(s) 343
Bsu36I CCTNAGG 1 cut(s) 1339
BsuRI GGCC 3 cut(s) 345, 699, 1394
BtgI CCRYGG 2 cut(s) 520, 736
BtsCI GGATG 2 cut(s) 150, 395
BtsI GCAGTG 2 cut(s) 306, 381
BtsIMutI CAGTG 2 cut(s) 306, 381
Cac8I GCNNGC 4 cut(s) 396, 531, 687, 925
CaiI CAGNNNCTG 1 cut(s) 1064
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 3 cut(s) 481, 991, 1205
Csp6I GTAC 3 cut(s) 911, 1139, 1403
CviAII CATG 6 cut(s) 50, 98, 271, 737, 981, 1455
CviQI GTAC 3 cut(s) 911, 1139, 1403
DdeI CTNAG 4 cut(s) 155, 261, 411, 1339
DpnI GATC 3 cut(s) 136, 243, 853
DpnII GATC 3 cut(s) 134, 241, 851
EaeI YGGCCR 3 cut(s) 343, 697, 1392
EagI CGGCCG 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
EciI GGCGGA 1 cut(s) 785
EclXI CGGCCG 1 cut(s) 343
Eco130I CCWWGG 4 cut(s) 559, 736, 1208, 1395
Eco31I GGTCTC 1 cut(s) 1403
Eco47I GGWCC 3 cut(s) 481, 991, 1205
Eco52I CGGCCG 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 971, 1130
Eco81I CCTNAGG 1 cut(s) 1339
EcoO109I RGGNCCY 2 cut(s) 991, 1205
EcoRII CCWGG 2 cut(s) 599, 642
EcoT14I CCWWGG 4 cut(s) 559, 736, 1208, 1395
EcoT22I ATGCAT 1 cut(s) 982
ErhI CCWWGG 4 cut(s) 559, 736, 1208, 1395
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 6 cut(s) 53, 101, 274, 740, 984, 1458
FaqI GGGAC 2 cut(s) 467, 977
FatI CATG 6 cut(s) 49, 97, 270, 736, 980, 1454
FauI CCCGC 1 cut(s) 107
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 65, 178, 942, 1062
FokI GGATG 2 cut(s) 157, 402
Fsp4HI GCNGC 4 cut(s) 65, 178, 942, 1062
FspBI CTAG 3 cut(s) 395, 678, 1427
GlaI GCGC 1 cut(s) 507
GluI GCNGC 4 cut(s) 65, 178, 942, 1062
GsuI CTGGAG 2 cut(s) 622, 1351
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 3 cut(s) 345, 699, 1394
HapII CCGG 1 cut(s) 1158
HhaI GCGC 1 cut(s) 508
Hin1II CATG 6 cut(s) 53, 101, 274, 740, 984, 1458
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 1261
HinfI GANTC 3 cut(s) 335, 541, 671
HpaII CCGG 1 cut(s) 1158
HphI GGTGA 4 cut(s) 119, 666, 773, 1225
Hpy166II GTNNAC 4 cut(s) 18, 573, 1171, 1279
Hpy188I TCNGA 3 cut(s) 810, 1110, 1225
Hpy188III TCNNGA 7 cut(s) 98, 235, 668, 779, 1032, 1341, 1375
Hpy8I GTNNAC 4 cut(s) 18, 573, 1171, 1279
HpyAV CCTTC 3 cut(s) 1029, 1105, 1240
HpyCH4IV ACGT 2 cut(s) 575, 1173
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 503
HpyF3I CTNAG 4 cut(s) 155, 261, 411, 1339
HpySE526I ACGT 2 cut(s) 575, 1173
Hsp92II CATG 6 cut(s) 53, 101, 274, 740, 984, 1458
HspAI GCGC 1 cut(s) 506
KpnI GGTACC 1 cut(s) 1142
Kzo9I GATC 3 cut(s) 134, 241, 851
LguI GCTCTTC 1 cut(s) 554
LmnI GCTCC 6 cut(s) 61, 416, 563, 738, 1010, 1199
Lsp1109I GCAGC 3 cut(s) 76, 953, 1073
LweI GCATC 3 cut(s) 575, 736, 1451
MaeI CTAG 3 cut(s) 395, 678, 1427
MaeII ACGT 2 cut(s) 575, 1173
MaeIII GTNAC 3 cut(s) 107, 672, 790
MalI GATC 3 cut(s) 136, 243, 853
MboI GATC 3 cut(s) 134, 241, 851
MboII GAAGA 9 cut(s) 113, 236, 360, 541, 719, 797, 852, 977, 1442
MfeI CAATTG 3 cut(s) 6, 138, 291
MflI RGATCY 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 1394
MluNI TGGCCA 1 cut(s) 1394
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 3 cut(s) 39, 850, 1072
MnlI CCTC 7 cut(s) 46, 354, 432, 518, 697, 723, 1348
Mox20I TGGCCA 1 cut(s) 1394
Mph1103I ATGCAT 1 cut(s) 982
MroXI GAANNNNTTC 1 cut(s) 1434
MscI TGGCCA 1 cut(s) 1394
MseI TTAA 3 cut(s) 42, 875, 1239
MslI CAYNNNNRTG 2 cut(s) 102, 679
Msp20I TGGCCA 1 cut(s) 1394
MspA1I CMGCKG 3 cut(s) 114, 944, 1064
MspI CCGG 1 cut(s) 1158
MspR9I CCNGG 2 cut(s) 601, 644
MunI CAATTG 3 cut(s) 6, 138, 291
MvaI CCWGG 2 cut(s) 601, 644
MwoI GCNNNNNNNGC 2 cut(s) 416, 503
NcoI CCATGG 1 cut(s) 736
NdeII GATC 3 cut(s) 134, 241, 851
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 6 cut(s) 53, 101, 274, 740, 984, 1458
NlaIV GGNNCC 6 cut(s) 483, 734, 967, 993, 1140, 1363
NmeAIII GCCGAG 2 cut(s) 321, 725
NmuCI GTSAC 2 cut(s) 107, 672
NsiI ATGCAT 1 cut(s) 982
NspI RCATGY 1 cut(s) 984
PagI TCATGA 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 1434
PfeI GAWTC 2 cut(s) 335, 541
PfoI TCCNGGA 1 cut(s) 599
PkrI GCNGC 4 cut(s) 66, 179, 943, 1063
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PpuMI RGGWCCY 2 cut(s) 991, 1205
PshBI ATTAAT 3 cut(s) 42, 875, 1239
Psp5II RGGWCCY 2 cut(s) 991, 1205
Psp6I CCWGG 2 cut(s) 599, 642
PspGI CCWGG 2 cut(s) 599, 642
PspN4I GGNNCC 6 cut(s) 483, 734, 967, 993, 1140, 1363
PspPI GGNCC 3 cut(s) 481, 991, 1205
PspPPI RGGWCCY 2 cut(s) 991, 1205
PstI CTGCAG 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 1064
PsuI RGATCY 1 cut(s) 241
PvuII CAGCTG 2 cut(s) 944, 1064
RsaI GTAC 3 cut(s) 912, 1140, 1404
RsaNI GTAC 3 cut(s) 911, 1139, 1403
RseI CAYNNNNRTG 2 cut(s) 102, 679
SalI GTCGAC 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 554
SaqAI TTAA 3 cut(s) 42, 875, 1239
SatI GCNGC 4 cut(s) 65, 178, 942, 1062
Sau3AI GATC 3 cut(s) 134, 241, 851
Sau96I GGNCC 3 cut(s) 481, 991, 1205
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 2 cut(s) 601, 644
SfaNI GCATC 3 cut(s) 575, 736, 1451
SfcI CTRYAG 2 cut(s) 384, 725
SinI GGWCC 3 cut(s) 481, 991, 1205
SmiMI CAYNNNNRTG 2 cut(s) 102, 679
SsiI CCGC 3 cut(s) 114, 177, 770
SspMI CTAG 3 cut(s) 395, 678, 1427
StyD4I CCNGG 2 cut(s) 599, 642
StyI CCWWGG 4 cut(s) 559, 736, 1208, 1395
TaiI ACGT 2 cut(s) 578, 1176
TaqI TCGA 3 cut(s) 17, 850, 1187
TatI WGTACW 1 cut(s) 910
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 335, 541
Tru1I TTAA 3 cut(s) 42, 875, 1239
Tru9I TTAA 3 cut(s) 42, 875, 1239
TscAI CASTG 2 cut(s) 306, 388
TseFI GTSAC 2 cut(s) 107, 672
TseI GCWGC 3 cut(s) 64, 941, 1061
Tsp45I GTSAC 2 cut(s) 107, 672
TspDTI ATGAA 7 cut(s) 61, 114, 453, 541, 568, 1063, 1340
TspGWI ACGGA 2 cut(s) 509, 921
TspRI CASTG 2 cut(s) 306, 388
VpaK11BI GGWCC 3 cut(s) 481, 991, 1205
VspI ATTAAT 3 cut(s) 42, 875, 1239
XapI RAATTY 5 cut(s) 459, 710, 774, 1095, 1434
XceI RCATGY 1 cut(s) 984
XmiI GTMKAC 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 1434
XspI CTAG 3 cut(s) 395, 678, 1427
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.