RLG00000007758
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
20705287 .. 20708519
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007758

Sequence Viewer

Length: 1257 bp
ATGGCAATTGGGCAGTGCAGAGATGTTGAGAAAGGGGGAACCAATAGTCTTGAGGATTTGGAACAGCCCTTTATCAAACAAGAGAAGAAGATTGATGCTGATTATGAAGATGGTAGTACTGGTTCAATTGGGATGGTTTTGCTTAGCACATGTGTTGCAGTTTGTGGCTCTTTCGAGTTCGGATCATGTGTGGGCTATTCAGCACCCACTCAATCAGCTATCAGGGAGGATCTCAATCTCTCTGTAGCTCAGATCCCAATATTTATAGCAGAAATCGCGCCCAAAAATCTCCGTGGAGGGCTTACAACATTAAATCAGCTCATGATTGTTACTGGATCCTCAGTTTCATTTGTAATAGGAACAATTATAAGTTGGAGGACACTGGCTATGGCTGGAATCCTTCCCTGCATTGTCTTGCTTGTTGGTCTACGGTTTGTTCCCGAGTCCCCTAGGTGGCTGGCAAAGATTGGCCATGAGAAAGAGTTCCAAGTTGCACTGCAAAGACTTCGCGGAAAATATGCAGATATATCTGATGAAACAGCTGAAATAAAAGAATATATTGTCACTCTACAAAGCCTTCCAAAATCCGGAGTGTTGGATTTGTTTCAAAGCAAATACATTCGTTTGGTGATTATTGGAGTTGGATTGATGGTATTTCAACAGTTTGGAGGTATTAATGGAATAGGATTCTATGCAAGTCAAACCTTTGAAGAAGCTGGTATCTCAAGCAAAATTGGAACCATAGCTTATGCATGTGTTCAGGTCCCAATTACTGTAGTGGGAGCAATGCTTATCGATAGGTCAGGAAGGAGACCTCTTATAATGGTTTCAGCAACTGGAACATTCCTTGGCTGTTTTCTAGCAGGAACTTCTTTCTTTCTTAAGGAATATGGTTTGCTGCATAACTGGGTACCAACAATAGCTGTGTCTGGTGTGCTGATTTACATTGCATTTTTCTCAATCGGAATGGGAGCGGCTCCTTGGGTGATAATGTCTGAGATCTTTCCAATCCATGTGAAAGGAGCTGCTGGTAGCTTAGTGGTGCTTGTGAACTGGTTGGGTGCTTGGGCAGTCTCCTATACTTACAACTTCCTTATGAGCTGGAGTTCCTCAAGAACTTATTACATGTATTCTGGATTCTCTTTGTTGACTATCCTATTTGTGGCAAAGTTGGTGCCAGAGACCAAAGGAAAAACACTAGAAGAAATTCAGGCATGCATCAATTCAGATAGAAGAGAACAAGATATCTTGAACTGA

Protein Analysis

419

Amino Acids

45.53

Weight (kDa)

6.03

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 85 - 404 1.3e-72 Sugar (and other) transporter
MFS_1 PF07690 86 - 355 6.4e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 368, 821
Acc65I GGTACC 1 cut(s) 910
AccB1I GGYRCC 2 cut(s) 910, 1174
AccBSI CCGCTC 1 cut(s) 974
AccI GTMKAC 1 cut(s) 427
AccII CGCG 2 cut(s) 278, 510
AccIII TCCGGA 1 cut(s) 587
AciI CCGC 2 cut(s) 510, 974
AclWI GGATC 5 cut(s) 190, 237, 247, 330, 343
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 1 cut(s) 1206
AfaI GTAC 2 cut(s) 118, 912
AfiI CCNNNNNNNGG 3 cut(s) 453, 587, 1162
AflII CTTAAG 1 cut(s) 881
AflIII ACRYGT 2 cut(s) 149, 1125
AgsI TTSAA 5 cut(s) 126, 608, 659, 710, 1252
Alw26I GTCTC 3 cut(s) 805, 1078, 1175
AlwI GGATC 5 cut(s) 190, 237, 247, 330, 343
AlwNI CAGNNNCTG 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 587
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 898, 1025
ApoI RAATTY 1 cut(s) 1206
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 2 cut(s) 482, 1206
Asp718I GGTACC 1 cut(s) 910
AspA2I CCTAGG 1 cut(s) 449
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 2 cut(s) 640, 997
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 763
AvrII CCTAGG 1 cut(s) 449
BalI TGGCCA 1 cut(s) 471
BamHI GGATCC 1 cut(s) 335
BanI GGYRCC 2 cut(s) 910, 1174
BbvI GCAGC 2 cut(s) 885, 1012
BccI CCATC 3 cut(s) 104, 127, 643
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BcoDI GTCTC 3 cut(s) 805, 1078, 1175
BfaI CTAG 3 cut(s) 450, 860, 1199
BfmI CTRYAG 2 cut(s) 243, 774
BfrI CTTAAG 1 cut(s) 881
BglII AGATCT 1 cut(s) 999
BisI GCNGC 3 cut(s) 899, 975, 1026
BlnI CCTAGG 1 cut(s) 449
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 3 cut(s) 900, 976, 1027
BmcAI AGTACT 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 7 cut(s) 40, 337, 739, 765, 912, 978, 1176
BmrI ACTGGG 1 cut(s) 916
BmsI GCATC 2 cut(s) 85, 1227
BmuI ACTGGG 1 cut(s) 916
BpmI CTGGAG 1 cut(s) 1123
Bpu1102I GCTNAGC 1 cut(s) 143
BpuEI CTTGAG 3 cut(s) 71, 709, 1096
Bsa29I ATCGAT 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 805, 1175
BsaJI CCNNGG 4 cut(s) 292, 449, 847, 980
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 3 cut(s) 453, 587, 1162
Bse1I ACTGG 6 cut(s) 124, 337, 387, 841, 911, 1058
Bse3DI GCAATG 2 cut(s) 792, 945
Bse8I GATNNNNATC 1 cut(s) 234
BseAI TCCGGA 1 cut(s) 587
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 4 cut(s) 292, 449, 847, 980
BseGI GGATG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 453, 587, 1162
BseMI GCAATG 2 cut(s) 792, 945
BseMII CTCAG 3 cut(s) 263, 354, 987
BseNI ACTGG 6 cut(s) 124, 337, 387, 841, 911, 1058
BseXI GCAGC 2 cut(s) 885, 1012
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 278, 510
BshFI GGCC 1 cut(s) 471
BshNI GGYRCC 2 cut(s) 910, 1174
BshVI ATCGAT 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 588
BslFI GGGAC 2 cut(s) 430, 749
BslI CCNNNNNNNGG 3 cut(s) 453, 587, 1162
BsmAI GTCTC 3 cut(s) 805, 1078, 1175
BsmFI GGGAC 2 cut(s) 430, 749
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 2 cut(s) 805, 1175
BsoBI CYCGRG 1 cut(s) 440
Bsp13I TCCGGA 1 cut(s) 587
Bsp143I GATC 5 cut(s) 182, 229, 252, 335, 999
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 2 cut(s) 510, 974
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 3 cut(s) 262, 353, 988
BspDI ATCGAT 1 cut(s) 795
BspEI TCCGGA 1 cut(s) 587
BspFNI CGCG 2 cut(s) 278, 510
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 7 cut(s) 40, 337, 739, 765, 912, 978, 1176
BspPI GGATC 5 cut(s) 190, 237, 247, 330, 343
BspT107I GGYRCC 2 cut(s) 910, 1174
BspTI CTTAAG 1 cut(s) 881
BspTNI GGTCTC 2 cut(s) 805, 1175
BsrBI CCGCTC 1 cut(s) 974
BsrDI GCAATG 2 cut(s) 792, 945
BsrI ACTGG 6 cut(s) 124, 337, 387, 841, 911, 1058
BssECI CCNNGG 4 cut(s) 292, 449, 847, 980
BssMI GATC 5 cut(s) 182, 229, 252, 335, 999
BssT1I CCWWGG 3 cut(s) 449, 847, 980
Bst4CI ACNGT 3 cut(s) 432, 663, 775
Bst6I CTCTTC 1 cut(s) 1228
BstAFI CTTAAG 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 459, 1216
BstDEI CTNAG 5 cut(s) 143, 249, 340, 996, 1036
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 2 cut(s) 278, 510
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 5 cut(s) 185, 232, 255, 338, 1002
BstMAI GTCTC 3 cut(s) 805, 1078, 1175
BstMBI GATC 5 cut(s) 182, 229, 252, 335, 999
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNSI RCATGY 4 cut(s) 153, 756, 1129, 1218
BstSFI CTRYAG 2 cut(s) 243, 774
BstUI CGCG 2 cut(s) 278, 510
BstV1I GCAGC 2 cut(s) 885, 1012
BstX2I RGATCY 4 cut(s) 229, 252, 335, 999
BstYI RGATCY 4 cut(s) 229, 252, 335, 999
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 1 cut(s) 471
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 2 cut(s) 20, 494
BtsIMutI CAGTG 3 cut(s) 20, 380, 494
Cac8I GCNNGC 2 cut(s) 459, 1216
CaiI CAGNNNCTG 1 cut(s) 836
CciI TCATGA 1 cut(s) 321
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 763
ClaI ATCGAT 1 cut(s) 795
Csp6I GTAC 2 cut(s) 117, 911
CviAII CATG 8 cut(s) 150, 186, 322, 473, 753, 1013, 1126, 1215
CviQI GTAC 2 cut(s) 117, 911
DdeI CTNAG 5 cut(s) 143, 249, 340, 996, 1036
DpnI GATC 5 cut(s) 184, 231, 254, 337, 1001
DpnII GATC 5 cut(s) 182, 229, 252, 335, 999
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 1228
EarI CTCTTC 1 cut(s) 1228
Eco130I CCWWGG 3 cut(s) 449, 847, 980
Eco31I GGTCTC 2 cut(s) 805, 1175
Eco32I GATATC 1 cut(s) 1246
Eco47I GGWCC 1 cut(s) 763
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 763
EcoRV GATATC 1 cut(s) 1246
EcoT14I CCWWGG 3 cut(s) 449, 847, 980
EcoT22I ATGCAT 2 cut(s) 754, 1220
ErhI CCWWGG 3 cut(s) 449, 847, 980
FaeI CATG 8 cut(s) 153, 189, 325, 476, 756, 1016, 1129, 1218
FaqI GGGAC 2 cut(s) 430, 749
FatI CATG 8 cut(s) 149, 185, 321, 472, 752, 1012, 1125, 1214
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 899, 975, 1026
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 3 cut(s) 899, 975, 1026
FspBI CTAG 3 cut(s) 450, 860, 1199
GlaI GCGC 1 cut(s) 279
GluI GCNGC 3 cut(s) 899, 975, 1026
GsuI CTGGAG 1 cut(s) 1123
HaeIII GGCC 1 cut(s) 471
HapII CCGG 1 cut(s) 588
HhaI GCGC 1 cut(s) 280
Hin1II CATG 8 cut(s) 153, 189, 325, 476, 756, 1016, 1129, 1218
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HinfI GANTC 4 cut(s) 396, 443, 687, 1137
HpaII CCGG 1 cut(s) 588
HphI GGTGA 2 cut(s) 640, 997
Hpy166II GTNNAC 3 cut(s) 428, 1051, 1149
Hpy188I TCNGA 6 cut(s) 182, 252, 532, 965, 997, 1228
Hpy188III TCNNGA 8 cut(s) 50, 322, 440, 588, 804, 1113, 1134, 1249
Hpy8I GTNNAC 3 cut(s) 428, 1051, 1149
HpyAV CCTTC 3 cut(s) 410, 587, 801
HpyCH4III ACNGT 3 cut(s) 432, 663, 775
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 5 cut(s) 143, 249, 340, 996, 1036
Hsp92II CATG 8 cut(s) 153, 189, 325, 476, 756, 1016, 1129, 1218
HspAI GCGC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 587
KpnI GGTACC 1 cut(s) 914
Kzo9I GATC 5 cut(s) 182, 229, 252, 335, 999
LmnI GCTCC 4 cut(s) 782, 971, 982, 1022
Lsp1109I GCAGC 2 cut(s) 885, 1012
LweI GCATC 2 cut(s) 85, 1227
MaeI CTAG 3 cut(s) 450, 860, 1199
MaeIII GTNAC 2 cut(s) 328, 562
MalI GATC 5 cut(s) 184, 231, 254, 337, 1001
MbiI CCGCTC 1 cut(s) 974
MboI GATC 5 cut(s) 182, 229, 252, 335, 999
MboII GAAGA 6 cut(s) 97, 100, 119, 722, 1214, 1245
MfeI CAATTG 2 cut(s) 6, 126
MflI RGATCY 4 cut(s) 229, 252, 335, 999
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 7 cut(s) 6, 126, 363, 732, 768, 1206, 1222
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 3 cut(s) 353, 576, 622
MnlI CCTC 8 cut(s) 46, 220, 290, 349, 369, 662, 825, 1120
Mox20I TGGCCA 1 cut(s) 471
Mph1103I ATGCAT 2 cut(s) 754, 1220
MroI TCCGGA 1 cut(s) 587
MroXI GAANNNNTTC 2 cut(s) 482, 1206
MscI TGGCCA 1 cut(s) 471
MseI TTAA 3 cut(s) 311, 675, 882
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 542
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 1 cut(s) 588
MunI CAATTG 2 cut(s) 6, 126
MvnI CGCG 2 cut(s) 278, 510
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 5 cut(s) 182, 229, 252, 335, 999
NlaIII CATG 8 cut(s) 153, 189, 325, 476, 756, 1016, 1129, 1218
NlaIV GGNNCC 7 cut(s) 40, 337, 739, 765, 912, 978, 1176
NmuCI GTSAC 1 cut(s) 562
NsiI ATGCAT 2 cut(s) 754, 1220
NspI RCATGY 4 cut(s) 153, 756, 1129, 1218
PaeI GCATGC 1 cut(s) 1218
PagI TCATGA 1 cut(s) 321
PciI ACATGT 2 cut(s) 149, 1125
PdmI GAANNNNTTC 2 cut(s) 482, 1206
PfeI GAWTC 3 cut(s) 396, 687, 1137
PkrI GCNGC 3 cut(s) 900, 976, 1027
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 763
PscI ACATGT 2 cut(s) 149, 1125
PshBI ATTAAT 1 cut(s) 675
PsiI TTATAA 2 cut(s) 368, 821
Psp5II RGGWCCY 1 cut(s) 763
PspN4I GGNNCC 7 cut(s) 40, 337, 739, 765, 912, 978, 1176
PspPI GGNCC 1 cut(s) 763
PspPPI RGGWCCY 1 cut(s) 763
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 4 cut(s) 229, 252, 335, 999
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 118, 912
RsaNI GTAC 2 cut(s) 117, 911
SaqAI TTAA 3 cut(s) 311, 675, 882
SatI GCNGC 3 cut(s) 899, 975, 1026
Sau3AI GATC 5 cut(s) 182, 229, 252, 335, 999
Sau96I GGNCC 1 cut(s) 763
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 1 cut(s) 452
SfaNI GCATC 2 cut(s) 85, 1227
SfcI CTRYAG 2 cut(s) 243, 774
SinI GGWCC 1 cut(s) 763
SmlI CTYRAG 4 cut(s) 50, 724, 881, 1111
SmoI CTYRAG 4 cut(s) 50, 724, 881, 1111
SphI GCATGC 1 cut(s) 1218
Sse9I AATT 7 cut(s) 6, 126, 363, 732, 768, 1206, 1222
SsiI CCGC 2 cut(s) 510, 974
SspI AATATT 1 cut(s) 261
SspMI CTAG 3 cut(s) 450, 860, 1199
StyI CCWWGG 3 cut(s) 449, 847, 980
TaaI ACNGT 3 cut(s) 432, 663, 775
TaqI TCGA 2 cut(s) 174, 795
TasI AATT 7 cut(s) 6, 126, 363, 732, 768, 1206, 1222
TatI WGTACW 1 cut(s) 116
TauI GCSGC 1 cut(s) 977
TfiI GAWTC 3 cut(s) 396, 687, 1137
Tru1I TTAA 3 cut(s) 311, 675, 882
Tru9I TTAA 3 cut(s) 311, 675, 882
TscAI CASTG 3 cut(s) 20, 387, 501
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 2 cut(s) 898, 1025
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 3 cut(s) 120, 336, 549
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 3 cut(s) 20, 387, 501
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 1 cut(s) 763
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 1206
XceI RCATGY 4 cut(s) 153, 756, 1129, 1218
XmaJI CCTAGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 2 cut(s) 482, 1206
XspI CTAG 3 cut(s) 450, 860, 1199
ZrmI AGTACT 1 cut(s) 118
Zsp2I ATGCAT 2 cut(s) 754, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.