Rroxscaffold_5G00363100
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
44201298 .. 44204817
3520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363100.1

Sequence Viewer

Length: 1473 bp
ATGGCAATTGGGCAGTGCAGAGATGTTGAGAACGGAGGAACCAAATGTCTTGAGGATTTGGAACAGCCCTTTATCAAACAAGAGAAGAAGATTGATGCTGATTATGAAGATGGTAGTACTTGTTCAATTGGGATGGTTTTGCTTAGCACATGTGTTGCAGTTTGTGGCTCTTTCGAGTTCGGATCATGTGTGGGCTATTCAGCACCCACTCAATCAGCTATCAGGGAGGATCTCAATCTCTCTCTAGCTCAGTTCTCCATGTTTGGCTCTATACTGACTATTGGTGCAATGCTGGGTGCTATGACAAGTGGTAGGATTGCGGACTTTCTTGGTCGAAAGGGGGCAATGAACGTGTCAGCCACTTTCTGTATTACAGGATGGCTAGCCATCTATTTCTCTGAGGGAGCTTTGTCACTTGACATGGGAAGGTTTTTAACTGGATATGGAATTGGAGTTTTCTCTTATGTGATCCCAATATTTATAGCAGAAATCGCGCCCAAAAATCTCCGTGGAGGGCTTACAACATTAAATCAGCTCATGATTGTTACTGGATCCTCAGTTTCATTTGTAATAGGAACAATTATAAGTTGGAGGACACTAGCTATAGCTGGAATCCTTCCCTGCATTGTCTTGCTTGTTGGTCTATGGTTTGTTCCCGAGTCCCCTAGATGGCTGGCAAAGATTGGCCATGAGAAAGAGTTCCAAGTTGCACTGCAAAGACTTCGCGGAAAATATGCAGATATATCTGATGAAACAGCTGAAATAAAAGAATATATTGTCACTCTACAAAGCCTTCCAAAATCCGGAGTGTTGGATTTGTTTAAAAGAAAATACATTTGTTTGGTGATTATTGGAGTTGGATTGATGGTATTTCAACAGTTTGGAGGTATTAATGGAATAGGATTCTATGCAAGTCAAACCTTTGAAGAAGCTGGTATCTCAAGCAAAATTGGAACCATAGCTTATGCATGTGTTCAGGTCCCAATTACCGTAGTGGGAGCAATGCTTATCGATAGGTCAGGAAGGAGACCTCTTATAATGGTTTCAGCAACTGGAACATTCCTAGGCTGTTTTCTATCAGGAACTTCTTTCTTTCTCAAGCAATATGGTTTGCTGCTTAATTGGGTACCAACAATAGCTGTGTCTGGTGTGCTGATTTACATTGCATTTTTCTCAATCGGAATGGGAGCAGTTCCTTGGGTGATAATGTCTGAGATCTTTCCAATCCATGTGAAAGGAGCTGCTGGTAGCTTAGTGGTGCTTGTGAACTGGTTGGGTGCTTGGGCAGTCTCTTATACTTACAACTTTCTTATGAGCTGGAGTTCCTCAAGAACTTATTACATGTATTCTGGATTCTCTTTGTTGACTATCCTATTTGTGGCAAAGTTGGTGCCAGAGACCAAAGGAAAAACACTAGAAGAAATTCAGGCATGCATCAATTCAGATAGAAGAGGACAAGATATATTGAACTGA

Protein Analysis

490

Amino Acids

53.18

Weight (kDa)

7.4

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 66 - 427 3.7e-24 Major Facilitator Superfamily
Sugar_tr PF00083 70 - 476 6.8e-87 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 584, 1037
Acc65I GGTACC 1 cut(s) 1126
AccB1I GGYRCC 2 cut(s) 1126, 1390
AccII CGCG 2 cut(s) 494, 726
AccIII TCCGGA 1 cut(s) 803
AciI CCGC 2 cut(s) 320, 726
AclWI GGATC 5 cut(s) 190, 237, 463, 546, 559
AcoI YGGCCR 1 cut(s) 685
AcsI RAATTY 1 cut(s) 1422
AfaI GTAC 2 cut(s) 118, 1128
AfiI CCNNNNNNNGG 3 cut(s) 669, 803, 1378
AflIII ACRYGT 3 cut(s) 149, 351, 1341
AgsI TTSAA 4 cut(s) 126, 875, 926, 1468
Alw26I GTCTC 3 cut(s) 1021, 1294, 1391
AlwI GGATC 5 cut(s) 190, 237, 463, 546, 559
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 1 cut(s) 656
Aor13HI TCCGGA 1 cut(s) 803
AoxI GGCC 1 cut(s) 685
ApeKI GCWGC 2 cut(s) 1114, 1241
ApoI RAATTY 1 cut(s) 1422
AseI ATTAAT 1 cut(s) 891
Asp700I GAANNNNTTC 2 cut(s) 698, 1422
Asp718I GGTACC 1 cut(s) 1126
AspA2I CCTAGG 1 cut(s) 1063
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 979
AsuHPI GGTGA 2 cut(s) 856, 1213
AsuNHI GCTAGC 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 1 cut(s) 979
AvrII CCTAGG 1 cut(s) 1063
BalI TGGCCA 1 cut(s) 687
BamHI GGATCC 1 cut(s) 551
BanI GGYRCC 2 cut(s) 1126, 1390
BbvI GCAGC 2 cut(s) 1101, 1228
BccI CCATC 6 cut(s) 104, 127, 372, 395, 663, 859
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BcoDI GTCTC 3 cut(s) 1021, 1294, 1391
BfaI CTAG 6 cut(s) 245, 383, 599, 666, 1064, 1415
BfmI CTRYAG 1 cut(s) 603
BglII AGATCT 1 cut(s) 1215
BisI GCNGC 2 cut(s) 1115, 1242
BlnI CCTAGG 1 cut(s) 1063
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 2 cut(s) 1116, 1243
BmcAI AGTACT 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 979
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 979
BmiI GGNNCC 6 cut(s) 40, 553, 955, 981, 1128, 1392
BmsI GCATC 2 cut(s) 85, 1443
BmtI GCTAGC 1 cut(s) 386
BpmI CTGGAG 1 cut(s) 1339
Bpu1102I GCTNAGC 1 cut(s) 143
BpuEI CTTGAG 4 cut(s) 71, 925, 1082, 1312
Bsa29I ATCGAT 1 cut(s) 1011
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 1021, 1391
BsaJI CCNNGG 3 cut(s) 508, 1063, 1196
BsaWI WCCGGW 1 cut(s) 803
Bsc4I CCNNNNNNNGG 3 cut(s) 669, 803, 1378
Bse1I ACTGG 4 cut(s) 442, 553, 1057, 1274
Bse3DI GCAATG 4 cut(s) 294, 351, 1008, 1161
Bse8I GATNNNNATC 1 cut(s) 234
BseAI TCCGGA 1 cut(s) 803
BseCI ATCGAT 1 cut(s) 1011
BseDI CCNNGG 3 cut(s) 508, 1063, 1196
BseGI GGATG 2 cut(s) 138, 383
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 669, 803, 1378
BseMI GCAATG 4 cut(s) 294, 351, 1008, 1161
BseMII CTCAG 4 cut(s) 263, 390, 570, 1203
BseNI ACTGG 4 cut(s) 442, 553, 1057, 1274
BseXI GCAGC 2 cut(s) 1101, 1228
BseYI CCCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 494, 726
BshFI GGCC 1 cut(s) 687
BshNI GGYRCC 2 cut(s) 1126, 1390
BshVI ATCGAT 1 cut(s) 1011
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 1 cut(s) 804
BslFI GGGAC 2 cut(s) 646, 965
BslI CCNNNNNNNGG 3 cut(s) 669, 803, 1378
BsmAI GTCTC 3 cut(s) 1021, 1294, 1391
BsmFI GGGAC 2 cut(s) 646, 965
BsnI GGCC 1 cut(s) 687
Bso31I GGTCTC 2 cut(s) 1021, 1391
BsoBI CYCGRG 1 cut(s) 656
Bsp13I TCCGGA 1 cut(s) 803
Bsp143I GATC 5 cut(s) 182, 229, 468, 551, 1215
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 2 cut(s) 320, 726
BspANI GGCC 1 cut(s) 687
BspCNI CTCAG 4 cut(s) 262, 391, 569, 1204
BspDI ATCGAT 1 cut(s) 1011
BspEI TCCGGA 1 cut(s) 803
BspFNI CGCG 2 cut(s) 494, 726
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 6 cut(s) 40, 553, 955, 981, 1128, 1392
BspOI GCTAGC 1 cut(s) 386
BspPI GGATC 5 cut(s) 190, 237, 463, 546, 559
BspT107I GGYRCC 2 cut(s) 1126, 1390
BspTNI GGTCTC 2 cut(s) 1021, 1391
BsrDI GCAATG 4 cut(s) 294, 351, 1008, 1161
BsrI ACTGG 4 cut(s) 442, 553, 1057, 1274
BssECI CCNNGG 3 cut(s) 508, 1063, 1196
BssMI GATC 5 cut(s) 182, 229, 468, 551, 1215
BssT1I CCWWGG 2 cut(s) 1063, 1196
Bst4CI ACNGT 2 cut(s) 879, 991
Bst6I CTCTTC 1 cut(s) 1444
BstC8I GCNNGC 3 cut(s) 384, 675, 1432
BstDEI CTNAG 6 cut(s) 143, 249, 399, 556, 1212, 1252
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 138, 383
BstFNI CGCG 2 cut(s) 494, 726
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 5 cut(s) 185, 232, 471, 554, 1218
BstMAI GTCTC 3 cut(s) 1021, 1294, 1391
BstMBI GATC 5 cut(s) 182, 229, 468, 551, 1215
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNSI RCATGY 4 cut(s) 153, 972, 1345, 1434
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 2 cut(s) 494, 726
BstV1I GCAGC 2 cut(s) 1101, 1228
BstX2I RGATCY 3 cut(s) 229, 551, 1215
BstYI RGATCY 3 cut(s) 229, 551, 1215
Bsu15I ATCGAT 1 cut(s) 1011
BsuRI GGCC 1 cut(s) 687
BsuTUI ATCGAT 1 cut(s) 1011
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 138, 383
BtsI GCAGTG 2 cut(s) 20, 710
BtsIMutI CAGTG 2 cut(s) 20, 710
Cac8I GCNNGC 3 cut(s) 384, 675, 1432
CaiI CAGNNNCTG 1 cut(s) 1052
CciI TCATGA 1 cut(s) 537
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 979
ClaI ATCGAT 1 cut(s) 1011
Csp6I GTAC 2 cut(s) 117, 1127
CviQI GTAC 2 cut(s) 117, 1127
DdeI CTNAG 6 cut(s) 143, 249, 399, 556, 1212, 1252
DpnI GATC 5 cut(s) 184, 231, 470, 553, 1217
DpnII GATC 5 cut(s) 182, 229, 468, 551, 1215
DraI TTTAAA 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 1444
EarI CTCTTC 1 cut(s) 1444
Eco130I CCWWGG 2 cut(s) 1063, 1196
Eco31I GGTCTC 2 cut(s) 1021, 1391
Eco47I GGWCC 1 cut(s) 979
Eco88I CYCGRG 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 979
EcoT14I CCWWGG 2 cut(s) 1063, 1196
EcoT22I ATGCAT 2 cut(s) 970, 1436
ErhI CCWWGG 2 cut(s) 1063, 1196
FaqI GGGAC 2 cut(s) 646, 965
Fnu4HI GCNGC 2 cut(s) 1115, 1242
FokI GGATG 2 cut(s) 145, 390
Fsp4HI GCNGC 2 cut(s) 1115, 1242
FspBI CTAG 6 cut(s) 245, 383, 599, 666, 1064, 1415
GlaI GCGC 1 cut(s) 495
GluI GCNGC 2 cut(s) 1115, 1242
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 1339
HaeIII GGCC 1 cut(s) 687
HapII CCGG 1 cut(s) 804
HhaI GCGC 1 cut(s) 496
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HincII GTYRAC 1 cut(s) 1365
HindII GTYRAC 1 cut(s) 1365
HinfI GANTC 4 cut(s) 612, 659, 903, 1353
HpaII CCGG 1 cut(s) 804
HphI GGTGA 2 cut(s) 856, 1213
Hpy166II GTNNAC 2 cut(s) 1267, 1365
Hpy188I TCNGA 6 cut(s) 182, 400, 748, 1181, 1213, 1444
Hpy188III TCNNGA 8 cut(s) 50, 538, 656, 804, 1020, 1080, 1329, 1350
Hpy8I GTNNAC 2 cut(s) 1267, 1365
HpyAV CCTTC 4 cut(s) 420, 626, 803, 1017
HpyCH4III ACNGT 2 cut(s) 879, 991
HpyCH4IV ACGT 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 6 cut(s) 143, 249, 399, 556, 1212, 1252
HpySE526I ACGT 1 cut(s) 351
HspAI GCGC 1 cut(s) 494
Kpn2I TCCGGA 1 cut(s) 803
KpnI GGTACC 1 cut(s) 1130
Kzo9I GATC 5 cut(s) 182, 229, 468, 551, 1215
LmnI GCTCC 4 cut(s) 404, 998, 1187, 1238
Lsp1109I GCAGC 2 cut(s) 1101, 1228
LweI GCATC 2 cut(s) 85, 1443
MaeI CTAG 6 cut(s) 245, 383, 599, 666, 1064, 1415
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 3 cut(s) 411, 544, 778
MalI GATC 5 cut(s) 184, 231, 470, 553, 1217
MboI GATC 5 cut(s) 182, 229, 468, 551, 1215
MboII GAAGA 6 cut(s) 97, 100, 119, 938, 1430, 1461
MfeI CAATTG 2 cut(s) 6, 126
MflI RGATCY 3 cut(s) 229, 551, 1215
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 9 cut(s) 6, 126, 447, 579, 948, 984, 1120, 1422, 1438
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 3 cut(s) 569, 792, 838
Mox20I TGGCCA 1 cut(s) 687
Mph1103I ATGCAT 2 cut(s) 970, 1436
MroI TCCGGA 1 cut(s) 803
MroXI GAANNNNTTC 2 cut(s) 698, 1422
MscI TGGCCA 1 cut(s) 687
MseI TTAA 5 cut(s) 434, 527, 822, 891, 1119
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 1 cut(s) 804
MunI CAATTG 2 cut(s) 6, 126
MvnI CGCG 2 cut(s) 494, 726
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeII GATC 5 cut(s) 182, 229, 468, 551, 1215
NheI GCTAGC 1 cut(s) 382
NlaIV GGNNCC 6 cut(s) 40, 553, 955, 981, 1128, 1392
NmuCI GTSAC 2 cut(s) 411, 778
NsiI ATGCAT 2 cut(s) 970, 1436
NspI RCATGY 4 cut(s) 153, 972, 1345, 1434
PaeI GCATGC 1 cut(s) 1434
PagI TCATGA 1 cut(s) 537
PciI ACATGT 2 cut(s) 149, 1341
PdmI GAANNNNTTC 2 cut(s) 698, 1422
PfeI GAWTC 3 cut(s) 612, 903, 1353
PkrI GCNGC 2 cut(s) 1116, 1243
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
PpuMI RGGWCCY 1 cut(s) 979
PscI ACATGT 2 cut(s) 149, 1341
PshBI ATTAAT 1 cut(s) 891
PsiI TTATAA 2 cut(s) 584, 1037
Psp5II RGGWCCY 1 cut(s) 979
PspFI CCCAGC 1 cut(s) 292
PspN4I GGNNCC 6 cut(s) 40, 553, 955, 981, 1128, 1392
PspPI GGNCC 1 cut(s) 979
PspPPI RGGWCCY 1 cut(s) 979
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 3 cut(s) 229, 551, 1215
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 2 cut(s) 118, 1128
RsaNI GTAC 2 cut(s) 117, 1127
SaqAI TTAA 5 cut(s) 434, 527, 822, 891, 1119
SatI GCNGC 2 cut(s) 1115, 1242
Sau3AI GATC 5 cut(s) 182, 229, 468, 551, 1215
Sau96I GGNCC 1 cut(s) 979
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 1 cut(s) 668
SfaNI GCATC 2 cut(s) 85, 1443
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 1 cut(s) 979
SmlI CTYRAG 4 cut(s) 50, 940, 1097, 1327
SmoI CTYRAG 4 cut(s) 50, 940, 1097, 1327
SphI GCATGC 1 cut(s) 1434
Sse9I AATT 9 cut(s) 6, 126, 447, 579, 948, 984, 1120, 1422, 1438
SsiI CCGC 2 cut(s) 320, 726
SspI AATATT 1 cut(s) 477
SspMI CTAG 6 cut(s) 245, 383, 599, 666, 1064, 1415
StyI CCWWGG 2 cut(s) 1063, 1196
TaaI ACNGT 2 cut(s) 879, 991
TaiI ACGT 1 cut(s) 354
TaqI TCGA 3 cut(s) 174, 334, 1011
TasI AATT 9 cut(s) 6, 126, 447, 579, 948, 984, 1120, 1422, 1438
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 3 cut(s) 612, 903, 1353
Tru1I TTAA 5 cut(s) 434, 527, 822, 891, 1119
Tru9I TTAA 5 cut(s) 434, 527, 822, 891, 1119
TscAI CASTG 2 cut(s) 20, 717
TseFI GTSAC 2 cut(s) 411, 778
TseI GCWGC 2 cut(s) 1114, 1241
Tsp45I GTSAC 2 cut(s) 411, 778
TspDTI ATGAA 4 cut(s) 120, 362, 552, 765
TspGWI ACGGA 2 cut(s) 48, 497
TspRI CASTG 2 cut(s) 20, 717
VpaK11BI GGWCC 1 cut(s) 979
VspI ATTAAT 1 cut(s) 891
XapI RAATTY 1 cut(s) 1422
XceI RCATGY 4 cut(s) 153, 972, 1345, 1434
XmaJI CCTAGG 1 cut(s) 1063
XmnI GAANNNNTTC 2 cut(s) 698, 1422
XspI CTAG 6 cut(s) 245, 383, 599, 666, 1064, 1415
ZrmI AGTACT 1 cut(s) 118
Zsp2I ATGCAT 2 cut(s) 970, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.