Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004465

Physical Location & Seq

Genomic Coordinates Reverse (-)

39268584 .. 39269896

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG228400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTATTTCAACAGTTTGGAGGTATTAATGGAATAGGATTCTATGCAAGTCAAACCTTTGAAGAAGCTGGTATCTCAAGCAAAATTGGAACCATAGCTTATGCATGTGTTCAGGTCCCAATTACTGTAGTGGGAGCAATGCATATCGATAGGTCAGGAAGGAGACCTCTTATAATGGTTTCAGCAACTGGAACATTCCTAGGCTGTTTTCTAGCAGGAACTTCTTTCTTTCTCAAGGAATATGGTTTGCTGCTTAATTGGGTACCAACAATAGCTGTGTCTGGTGTGCTGATTTACATTGCATTTTTCTCAATCGGAATGGGAGCAGTTCCTTGGGTGATAATGTCTGAGATCTTTCCAATCCATGTGAAAGGAGCTGCTGGTAGCTTAGTGGTGCTTGTGAACTGGTTGGGTGCTTGGGCAGTCTCTTATACTTACAACTTCCTTATGAGCTGGAGTTCCTCAAGAACTTATTACATGTATTCTGGATTCTCTTTGTTGACTATCCTATTTGTGGCAAAGTTGGTGCCAGAGACCAAAGGAAAAACACTAGAAGAAATTCAGGCATGCATCAAGTCAGATAGAAGAGAACAAGATATCTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

202

Amino Acids

22.14

Weight (kDa)

8.42

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 188	4.1e-43	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18840
fragaria_vesca	FvH4_4g16900 FvH4_4g16900 FvH4_4g16900
malus_domestica	MD13G1175900.v1.1
prunus_persica	Prupe.1G144800_v2.0.a1 Prupe.1G144800_v2.0.a1 Prupe.1G144900_v2.0.a1
pyrus_communis	pycom13g15160
rosa_chinensis	RchiOBHm_Chr4g0420471 RchiOBHm_Chr4g0420481
rosa_laevigata	RLG00000007758 RLG00000007760
rosa_multiflora	Rmu_sc0002248.1_g000042 Rmu_sc0020995.1_g000009
rosa_roxburghii	Rroxscaffold_5G00363090 Rroxscaffold_5G00363100
rosa_rugosa	Rorug04G0164000 Rorug04G0164000 Rorug04G0164100 Rorug04G0164200 Rorug04G0164200
rosa_samantha	Rh4AG225700 Rh4AG225800 Rh4BG228300 Rh4BG228400 Rh4CG240000 Rh4CG240100 Rh4DG224100 Rh4DG224200
rosa_wichuraiana	Rw4G019480 Rw4G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
Acc65I	GGTACC	1 cut(s)	262
AccB1I	GGYRCC	2 cut(s)	262, 526
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	514
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	11, 62, 604
AluBI	AGCT	6 cut(s)	68, 98, 275, 377, 387, 453
AluI	AGCT	6 cut(s)	68, 98, 275, 377, 387, 453
Alw26I	GTCTC	3 cut(s)	157, 430, 527
AlwNI	CAGNNNCTG	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	250, 377
ApoI	RAATTY	1 cut(s)	558
AseI	ATTAAT	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	558
Asp718I	GGTACC	1 cut(s)	262
AspA2I	CCTAGG	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	115
AvrII	CCTAGG	1 cut(s)	199
BanI	GGYRCC	2 cut(s)	262, 526
BbvI	GCAGC	2 cut(s)	237, 364
BcoDI	GTCTC	3 cut(s)	157, 430, 527
BfaI	CTAG	3 cut(s)	200, 212, 551
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	2 cut(s)	251, 378
BlnI	CCTAGG	1 cut(s)	199
BlsI	GCNGC	2 cut(s)	252, 379
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	4 cut(s)	91, 117, 264, 528
BmsI	GCATC	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	475
BpuEI	CTTGAG	3 cut(s)	61, 218, 448
Bsa29I	ATCGAT	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	157, 527
BsaJI	CCNNGG	2 cut(s)	199, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	2 cut(s)	193, 410
Bse3DI	GCAATG	2 cut(s)	144, 297
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	199, 332
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	2 cut(s)	144, 297
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	193, 410
BseXI	GCAGC	2 cut(s)	237, 364
BshNI	GGYRCC	2 cut(s)	262, 526
BshVI	ATCGAT	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	3 cut(s)	157, 430, 527
BsmFI	GGGAC	1 cut(s)	101
Bso31I	GGTCTC	2 cut(s)	157, 527
Bsp143I	GATC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	4 cut(s)	91, 117, 264, 528
BspT107I	GGYRCC	2 cut(s)	262, 526
BspTNI	GGTCTC	2 cut(s)	157, 527
BsrDI	GCAATG	2 cut(s)	144, 297
BsrI	ACTGG	2 cut(s)	193, 410
BssECI	CCNNGG	2 cut(s)	199, 332
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	199, 332
Bst4CI	ACNGT	2 cut(s)	15, 127
Bst6I	CTCTTC	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	2 cut(s)	348, 388
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	3 cut(s)	157, 430, 527
BstMBI	GATC	1 cut(s)	351
BstNSI	RCATGY	3 cut(s)	108, 481, 570
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	237, 364
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	147
BsuTUI	ATCGAT	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	4 cut(s)	105, 365, 478, 567
CviJI	RGCY	7 cut(s)	68, 98, 204, 275, 377, 387, 453
CviKI_1	RGCY	7 cut(s)	68, 98, 204, 275, 377, 387, 453
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	348, 388
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	580
Eco130I	CCWWGG	2 cut(s)	199, 332
Eco31I	GGTCTC	2 cut(s)	157, 527
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	2 cut(s)	199, 332
EcoT22I	ATGCAT	3 cut(s)	106, 144, 572
ErhI	CCWWGG	2 cut(s)	199, 332
FaeI	CATG	4 cut(s)	108, 368, 481, 570
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	4 cut(s)	104, 364, 477, 566
Fnu4HI	GCNGC	2 cut(s)	251, 378
Fsp4HI	GCNGC	2 cut(s)	251, 378
FspBI	CTAG	3 cut(s)	200, 212, 551
GluI	GCNGC	2 cut(s)	251, 378
GsuI	CTGGAG	1 cut(s)	475
Hin1II	CATG	4 cut(s)	108, 368, 481, 570
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	2 cut(s)	39, 489
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	403, 501
Hpy188I	TCNGA	3 cut(s)	317, 349, 580
Hpy188III	TCNNGA	4 cut(s)	156, 465, 486, 601
Hpy8I	GTNNAC	2 cut(s)	403, 501
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	15, 127
HpyCH4V	TGCA	5 cut(s)	47, 104, 142, 302, 570
HpyF3I	CTNAG	2 cut(s)	348, 388
Hsp92II	CATG	4 cut(s)	108, 368, 481, 570
KpnI	GGTACC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	134, 323, 374
Lsp1109I	GCAGC	2 cut(s)	237, 364
LweI	GCATC	1 cut(s)	579
MaeI	CTAG	3 cut(s)	200, 212, 551
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	3 cut(s)	74, 566, 597
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	4 cut(s)	84, 120, 256, 558
MnlI	CCTC	3 cut(s)	14, 177, 472
Mph1103I	ATGCAT	3 cut(s)	106, 144, 572
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	2 cut(s)	27, 255
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	4 cut(s)	108, 368, 481, 570
NlaIV	GGNNCC	4 cut(s)	91, 117, 264, 528
NsiI	ATGCAT	3 cut(s)	106, 144, 572
NspI	RCATGY	3 cut(s)	108, 481, 570
PaeI	GCATGC	1 cut(s)	570
PciI	ACATGT	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	39, 489
PkrI	GCNGC	2 cut(s)	252, 379
PpuMI	RGGWCCY	1 cut(s)	115
PscI	ACATGT	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	91, 117, 264, 528
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	27, 255
SatI	GCNGC	2 cut(s)	251, 378
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	115
SfaNI	GCATC	1 cut(s)	579
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	3 cut(s)	76, 233, 463
SmoI	CTYRAG	3 cut(s)	76, 233, 463
SphI	GCATGC	1 cut(s)	570
Sse9I	AATT	4 cut(s)	84, 120, 256, 558
SspMI	CTAG	3 cut(s)	200, 212, 551
StyI	CCWWGG	2 cut(s)	199, 332
TaaI	ACNGT	2 cut(s)	15, 127
TaqI	TCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	84, 120, 256, 558
TfiI	GAWTC	2 cut(s)	39, 489
Tru1I	TTAA	2 cut(s)	27, 255
Tru9I	TTAA	2 cut(s)	27, 255
TseI	GCWGC	2 cut(s)	250, 377
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	3 cut(s)	108, 481, 570
XmaJI	CCTAGG	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	3 cut(s)	200, 212, 551
Zsp2I	ATGCAT	3 cut(s)	106, 144, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.