Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004465

Physical Location & Seq

Genomic Coordinates Reverse (-)

44184330 .. 44185873

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGTTTCAACAATTTGCTGGTATTAATGGAGTACAATTTTATGCAAGCGAAACCTTTGAAGCAGCTGGATTTTCAGGCAGTATTGGAACCACAGCTTATGCATGTCTTCAGGTCCCAATCACTCTATTAGGAGCGTTTCTAATGGATAAGTCAGGAAGGAGAGTTCTCGTAATGGTTTCAGCAGCTGGAATGTTCATAGGCTCTATTCTTGTTGGAATTTCTTTCTCTCTGAAGGGAGATGGTTTGCTACTGGATTGGGTACCGATACTTGCTGTGTCCGGTGTGCTGGTTTACGTTGCATTTTTTTCGATTGGTATGGGAGCAGGCCCTTGGGTGATAATGTCCGAGATTTTCCCAATTAATGTGAAGGGAGTGGGTGGAAGCTTGGTGGTGTTTGTGAACTGGTCTGGTGCTTGGGTAGTTTCCTTTACTTACAACTCTCTTATGAACTGGAGTTCCTCAGGAACATACTACCTGTATGGTGCAGTCTGTGTCTTGACAATCCTATTTGTGGCCAAGGTAGTCCCAGAGACCAAAGGAAAAACGCTAGAAGAAATTCAAGCATCACTCAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

193

Amino Acids

20.5

Weight (kDa)

5.25

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 189	1.8e-42	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18840
fragaria_vesca	FvH4_4g16900 FvH4_4g16900 FvH4_4g16900
malus_domestica	MD13G1175900.v1.1
prunus_persica	Prupe.1G144800_v2.0.a1 Prupe.1G144800_v2.0.a1 Prupe.1G144900_v2.0.a1
pyrus_communis	pycom13g15160
rosa_chinensis	RchiOBHm_Chr4g0420471 RchiOBHm_Chr4g0420481
rosa_laevigata	RLG00000007758 RLG00000007760
rosa_multiflora	Rmu_sc0002248.1_g000042 Rmu_sc0020995.1_g000009
rosa_roxburghii	Rroxscaffold_5G00363090 Rroxscaffold_5G00363100
rosa_rugosa	Rorug04G0164000 Rorug04G0164000 Rorug04G0164100 Rorug04G0164200 Rorug04G0164200
rosa_samantha	Rh4AG225700 Rh4AG225800 Rh4BG228300 Rh4BG228400 Rh4CG240000 Rh4CG240100 Rh4DG224100 Rh4DG224200
rosa_wichuraiana	Rw4G019480 Rw4G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	219, 558
AcuI	CTGAAG	2 cut(s)	95, 254
AfaI	GTAC	2 cut(s)	36, 264
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	11, 62, 563
AloI	GAACNNNNNNTCC	4 cut(s)	150, 182, 443, 475
AluBI	AGCT	4 cut(s)	68, 98, 188, 387
AluI	AGCT	4 cut(s)	68, 98, 188, 387
Alw26I	GTCTC	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	328, 516
ApeKI	GCWGC	2 cut(s)	65, 185
ApoI	RAATTY	2 cut(s)	219, 558
AseI	ATTAAT	2 cut(s)	27, 363
Asp700I	GAANNNNTTC	1 cut(s)	558
Asp718I	GGTACC	1 cut(s)	262
AspS9I	GGNCC	2 cut(s)	115, 329
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	77, 197
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	2 cut(s)	66, 186
BlsI	GCNGC	2 cut(s)	67, 187
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 329
BmiI	GGNNCC	3 cut(s)	91, 117, 264
BmsI	GCATC	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	332, 519
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	3 cut(s)	258, 410, 458
Bse21I	CCTNAGG	1 cut(s)	463
BseDI	CCNNGG	2 cut(s)	332, 519
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	3 cut(s)	258, 410, 458
BseXI	GCAGC	2 cut(s)	77, 197
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	330, 518
BshNI	GGYRCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	101, 512
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	101, 512
BsnI	GGCC	2 cut(s)	330, 518
Bso31I	GGTCTC	1 cut(s)	527
BspANI	GGCC	2 cut(s)	330, 518
BspCNI	CTCAG	1 cut(s)	476
BspLI	GGNNCC	3 cut(s)	91, 117, 264
BspT107I	GGYRCC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	527
BsrI	ACTGG	3 cut(s)	258, 410, 458
BssECI	CCNNGG	2 cut(s)	332, 519
BssT1I	CCWWGG	2 cut(s)	332, 519
BstC8I	GCNNGC	2 cut(s)	49, 328
BstDEI	CTNAG	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	77, 197
BstV2I	GAAGAC	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	330, 518
Cac8I	GCNNGC	2 cut(s)	49, 328
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	115, 329
Csp6I	GTAC	2 cut(s)	35, 263
CviAII	CATG	2 cut(s)	105, 579
CviJI	RGCY	7 cut(s)	68, 98, 188, 204, 330, 387, 518
CviKI_1	RGCY	7 cut(s)	68, 98, 188, 204, 330, 387, 518
CviQI	GTAC	2 cut(s)	35, 263
DdeI	CTNAG	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	516
Eco130I	CCWWGG	2 cut(s)	332, 519
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	95, 254
Eco81I	CCTNAGG	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	115, 329
EcoT14I	CCWWGG	2 cut(s)	332, 519
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	332, 519
FaeI	CATG	2 cut(s)	108, 582
FaiI	YATR	9 cut(s)	45, 102, 106, 200, 320, 449, 472, 483, 580
FaqI	GGGAC	2 cut(s)	101, 512
FatI	CATG	2 cut(s)	104, 578
Fnu4HI	GCNGC	2 cut(s)	66, 186
Fsp4HI	GCNGC	2 cut(s)	66, 186
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	2 cut(s)	66, 186
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	330, 518
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	2 cut(s)	108, 582
HindIII	AAGCTT	1 cut(s)	385
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	295, 403
Hpy188I	TCNGA	2 cut(s)	234, 349
Hpy188III	TCNNGA	3 cut(s)	156, 465, 499
Hpy8I	GTNNAC	2 cut(s)	295, 403
HpyAV	CCTTC	3 cut(s)	153, 229, 364
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	47, 104, 302, 488
HpyF3I	CTNAG	1 cut(s)	463
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	108, 582
KpnI	GGTACC	1 cut(s)	266
LmnI	GCTCC	2 cut(s)	134, 323
Lsp1109I	GCAGC	2 cut(s)	77, 197
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	297
MboII	GAAGA	2 cut(s)	101, 566
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	5 cut(s)	14, 38, 219, 360, 558
MluNI	TGGCCA	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	472
Mox20I	TGGCCA	1 cut(s)	518
Mph1103I	ATGCAT	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	2 cut(s)	27, 363
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	2 cut(s)	68, 188
MspI	CCGG	1 cut(s)	282
NlaIII	CATG	2 cut(s)	108, 582
NlaIV	GGNNCC	3 cut(s)	91, 117, 264
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	558
PkrI	GCNGC	2 cut(s)	67, 187
PpuMI	RGGWCCY	1 cut(s)	115
PshBI	ATTAAT	2 cut(s)	27, 363
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	91, 117, 264
PspPI	GGNCC	2 cut(s)	115, 329
PspPPI	RGGWCCY	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	2 cut(s)	68, 188
RsaI	GTAC	2 cut(s)	36, 264
RsaNI	GTAC	2 cut(s)	35, 263
SaqAI	TTAA	2 cut(s)	27, 363
SatI	GCNGC	2 cut(s)	66, 186
Sau96I	GGNCC	2 cut(s)	115, 329
SetI	ASST	9 cut(s)	59, 70, 100, 117, 190, 300, 389, 480, 525
SfaNI	GCATC	1 cut(s)	575
SinI	GGWCC	1 cut(s)	115
Sse9I	AATT	5 cut(s)	14, 38, 219, 360, 558
SspMI	CTAG	1 cut(s)	551
StyI	CCWWGG	2 cut(s)	332, 519
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	311
TasI	AATT	5 cut(s)	14, 38, 219, 360, 558
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	27, 363
Tru9I	TTAA	2 cut(s)	27, 363
TseI	GCWGC	2 cut(s)	65, 185
TspDTI	ATGAA	2 cut(s)	187, 464
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	2 cut(s)	27, 363
XapI	RAATTY	2 cut(s)	219, 558
XceI	RCATGY	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.